@article{SchwarzerHeinkenLuthardtetal.2013,
  author    = {Schwarzer, Christian and Heinken, Thilo and Luthardt, Vera and Joshi, Jasmin Radha},
  title     = {Latitudinal shifts in species interactions interfere with resistance of southern but not of northern bog-plant communities to experimental climate change},
  series = {The journal of ecology},
  volume    = {101},
  journal   = {The journal of ecology},
  number    = {6},
  publisher = {Wiley-Blackwell},
  address   = {Hoboken},
  issn      = {0022-0477},
  doi       = {10.1111/1365-2745.12158},
  pages     = {1484 -- 1497},
  year      = {2013},
  abstract  = {The persistence of species under changed climatic conditions depends on adaptations and plastic responses to these conditions and on interactions with their local plant community resulting in direct and indirect effects of changed climatic conditions. Populations at species' range margins may be especially crucial in containing a gene pool comprising adaptations to extreme climatic conditions. Many species of northern European bog ecosystems reach their southern lowland range limit in central Europe. In a common-garden experiment, we experimentally assessed the impact of projected climatic changes on five bog-plant species (including peat moss Sphagnum magellanicum) sampled along a latitudinal gradient of 1400km from Scandinavia to the marginal lowland populations in Germany. Populations were cultivated in monocultures and in experimental communities composed of all five species from their local community, and exposed to five combinations of three climate treatments (warming, fluctuating water-tables, fertilization) in a southern common garden. Whereas most monocultures showed a decreasing biomass production from southern to northern origins under southern environmental conditions, in the experimental mixed-species communities, an increasing biomass production towards northern communities was observed together with a shift in interspecific interactions along the latitudinal gradient. While negative dominance effects prevailed in southern communities, higher net biodiversity effects were observed in northern subarctic communities. The combined effects of climate treatments increased biomass production in monocultures of most origins. In communities, however, overall the treatments did not result in significantly changed biomass production. Among individual treatments, water-table fluctuations caused a significant decrease in biomass production, but only in southern communities, indicating higher vulnerability to changed climatic conditions. Here, negative effects of climate treatments on graminoids were not compensated by the slightly increased growth of peat moss that benefited from interspecific interactions only in northern communities.Synthesis. We conclude that shifting interactions within multispecies communities caused pronounced responses to changed climatic conditions in wetland communities of temperate southern marginal, but not of northern subarctic origin. Therefore, future models investigating the impacts of climate change on plant communities should consider geographical variation in species interactions an important factor influencing community responses to changed climatic conditions.},
  language  = {en}
}
@article{RottstockJoshiKummeretal.2014,
  author    = {Rottstock, Tanja and Joshi, Jasmin Radha and Kummer, Volker and Fischer, Markus},
  title     = {Higher plant diversity promotes higher diversity of fungal pathogens, while it decreases pathogen infection per plant},
  series = {Ecology : a publication of the Ecological Society of America},
  volume    = {95},
  journal   = {Ecology : a publication of the Ecological Society of America},
  number    = {7},
  publisher = {Wiley},
  address   = {Washington},
  issn      = {0012-9658},
  pages     = {1907 -- 1917},
  year      = {2014},
  abstract  = {Fungal plant pathogens are common in natural communities where they affect plant physiology, plant survival, and biomass production. Conversely, pathogen transmission and infection may be regulated by plant community characteristics such as plant species diversity and functional composition that favor pathogen diversity through increases in host diversity while simultaneously reducing pathogen infection via increased variability in host density and spatial heterogeneity. Therefore, a comprehensive understanding of multi-host multi-pathogen interactions is of high significance in the context of biodiversity-ecosystem functioning. We investigated the relationship between plant diversity and aboveground obligate parasitic fungal pathogen ("pathogens" hereafter) diversity and infection in grasslands of a long-term, large-scale, biodiversity experiment with varying plant species (1-60 species) and plant functional group diversity (1-4 groups). To estimate pathogen infection of the plant communities, we visually assessed pathogen-group presence (i.e., rusts, powdery mildews, downy mildews, smuts, and leaf-spot diseases) and overall infection levels (combining incidence and severity of each pathogen group) in 82 experimental plots on all aboveground organs of all plant species per plot during four surveys in 2006. Pathogen diversity, assessed as the cumulative number of pathogen groups on all plant species per plot, increased log-linearly with plant species diversity. However, pathogen incidence and severity, and hence overall infection, decreased with increasing plant species diversity. In addition, co-infection of plant individuals by two or more pathogen groups was less likely with increasing plant community diversity. We conclude that plant community diversity promotes pathogen-community diversity while at the same time reducing pathogen infection levels of plant individuals.},
  language  = {en}
}
@misc{RojasJimenezGrossartCordesetal.2020,
  author    = {Rojas-Jimenez, Keilor and Grossart, Hans-Peter and Cordes, Erik and Cort{\´e}s, Jorge},
  title     = {Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {1013},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-48236},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-482360},
  pages     = {11},
  year      = {2020},
  abstract  = {Deep waters represent the largest biome on Earth and the largest ecosystem of Costa Rica. Fungi play a fundamental role in global biogeochemical cycling in marine sediments, yet, they remain little explored. We studied fungal diversity and community composition in several marine sediments from 16 locations sampled along a bathymetric gradient (from a depth of 380 to 3,474 m) in two transects of about 1,500 km length in the Eastern Tropical Pacific (ETP) of Costa Rica. Sequence analysis of the V7-V8 region of the 18S rRNA gene obtained from sediment cores revealed the presence of 787 fungal amplicon sequence variants (ASVs). On average, we detected a richness of 75 fungal ASVs per sample. Ascomycota represented the most abundant phylum with Saccharomycetes constituting the dominant class. Three ASVs accounted for ca. 63\% of all fungal sequences: the yeast Metschnikowia (49.4\%), Rhizophydium (6.9\%), and Cladosporium (6.7\%). We distinguished a cluster composed mainly by yeasts, and a second cluster by filamentous fungi, but we were unable to detect a strong effect of depth and the overlying water temperature, salinity, dissolved oxygen (DO), and pH on the composition of fungal communities. We highlight the need to understand further the ecological role of fungi in deep-sea ecosystems.},
  language  = {en}
}
@article{RojasJimenezGrossartCordesetal.2020,
  author    = {Rojas-Jimenez, Keilor and Grossart, Hans-Peter and Cordes, Erik and Cort{\´e}s, Jorge},
  title     = {Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific},
  series = {Frontiers in Microbiology},
  volume    = {11},
  journal   = {Frontiers in Microbiology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {1664-302X},
  doi       = {10.3389/fmicb.2020.575207},
  pages     = {9},
  year      = {2020},
  abstract  = {Deep waters represent the largest biome on Earth and the largest ecosystem of Costa Rica. Fungi play a fundamental role in global biogeochemical cycling in marine sediments, yet, they remain little explored. We studied fungal diversity and community composition in several marine sediments from 16 locations sampled along a bathymetric gradient (from a depth of 380 to 3,474 m) in two transects of about 1,500 km length in the Eastern Tropical Pacific (ETP) of Costa Rica. Sequence analysis of the V7-V8 region of the 18S rRNA gene obtained from sediment cores revealed the presence of 787 fungal amplicon sequence variants (ASVs). On average, we detected a richness of 75 fungal ASVs per sample. Ascomycota represented the most abundant phylum with Saccharomycetes constituting the dominant class. Three ASVs accounted for ca. 63\% of all fungal sequences: the yeast Metschnikowia (49.4\%), Rhizophydium (6.9\%), and Cladosporium (6.7\%). We distinguished a cluster composed mainly by yeasts, and a second cluster by filamentous fungi, but we were unable to detect a strong effect of depth and the overlying water temperature, salinity, dissolved oxygen (DO), and pH on the composition of fungal communities. We highlight the need to understand further the ecological role of fungi in deep-sea ecosystems.},
  language  = {en}
}
@phdthesis{Riedl2021,
  author    = {Riedl, Simon},
  title     = {Active tectonics in the Kenya Rift},
  doi       = {10.25932/publishup-53855},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538552},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xi, 207},
  year      = {2021},
  abstract  = {Magmatische und tektonisch aktive Grabenzonen (Rifts) stellen die Vorstufen entstehender Plattengrenzen dar. Diese sich spreizenden tektonischen Provinzen zeichnen sich durch allgegenw{\"a}rtige Abschiebungen aus, und die r{\"a}umliche Verteilung, die Geometrie, und das Alter dieser Abschiebungen l{\"a}sst R{\"u}ckschl{\"u}sse auf die r{\"a}umlichen und zeitlichen Zusammenh{\"a}nge zwischen tektonischer Deformation, Magmatismus und langwelliger Krustendeformation in Rifts zu. Diese Arbeit konzentriert sich auf die St{\"o}rungsaktivit{\"a}t im Kenia-Rift des k{\"a}nozoischen Ostafrikanischen Grabensystems im Zeitraum zwischen dem mittleren Pleistoz{\"a}n und dem Holoz{\"a}n. Um die fr{\"u}hen Stadien der Entstehung kontinentaler Plattengrenzen zu untersuchen, wird in dieser Arbeit eine zeitlich gemittelte minimale Extensionsrate f{\"u}r den inneren Graben des N{\"o}rdlichen Kenia-Rifts (NKR) f{\"u}r die letzten 0,5 Mio Jahre abgeleitet. Die Analyse beruht auf Messungen mit Hilfe des digitalen TanDEM-X-H{\"o}henmodells, um die Abschiebungen entlang der vulkanisch-tektonischen Achse des inneren Grabens des NKR zu kartieren und deren Versatzbetr{\"a}ge zu bestimmen. Mithilfe von vorhandenen Geochronologiedaten der deformierten vulkanischen Einheiten sowie in dieser Arbeit erstellten ⁴⁰Ar/³⁹Ar-Datierungen werden zeitlich gemittelte Extensionsraten berechnet. Die Auswertungen zeigen, dass im inneren Graben des NKR die langfristige Extensionsrate f{\"u}r mittelpleistoz{\"a}ne bis rezente St{\"o}rungen Mindestwerte von 1,0 bis 1,6 mm yr⁻¹ aufweist und lokal allerdings auch Werte bis zu 2,0 mm yr⁻¹ existieren. In Anbetracht der nahezu inaktiven Randst{\"o}rungen des NKR zeigt sich somit, dass sich die Extension auf die Region der aktiven vulkanisch-tektonischen Achse im inneren Graben konzentriert und somit ein fortgeschrittenes Stadium kontinentaler Extensionsprozesse im NKR vorliegt. In dieser Arbeit wird diese r{\"a}umlich fokussierte Extension zudem im Rahmen einer St{\"o}rungsanalyse der j{\"u}ngsten vulkanischen Erscheinungen des Kenia-Rifts betrachtet. Die Arbeit analysiert mithilfe von Gel{\"a}ndekartierungen und eines auf Luftbildern basierenden Gel{\"a}ndemodells die St{\"o}rungscharakteristika der etwa 36 tausend Jahre alten Menengai-Kaldera und der umliegenden Gebiete im zentralen Kenia-Rift. Im Allgemeinen sind die holoz{\"a}nen St{\"o}rungen innerhalb des Rifts reine, NNO-streichende Abschiebungen, die somit das gegenw{\"a}rtige tektonische Spannungsfeld wiederspiegeln; innerhalb der Menengai-Kaldera sind die jungen Strukturen jedoch von andauernder magmatischer Aktivit{\"a}t und von Aufdomung {\"u}berpr{\"a}gt. Die Kaldera befindet sich im Zentrum eines sich aktiv dehnenden Riftsegments und zusammen mit den anderen quart{\"a}ren Vulkanen des Kenia-Rifts lassen sich diese Bereiche als Kernpunkte der extensionalen St{\"o}rungsaktivit{\"a}t verstehen, die letztlich zu einer weiter entwickelten Phase magmengest{\"u}tzter Kontinentalseparation f{\"u}hren werden. Die bereits seit dem Terti{\"a}r andauernde St{\"o}rungsaktivit{\"a}t im Kenia-Rift f{\"u}hrt zur Zergliederung der gr{\"o}ßeren Rift-Senken in kleinere Segmente und beeinflusst die Sedimentologie und die Hydrologie dieser Riftbecken. Gegenw{\"a}rtig sind die meisten, durch St{\"o}rungen begrenzten Becken des Kenia-Rifts hydrologisch isoliert, sie waren aber w{\"a}hrend feuchter Klimaphasen hydrologisch miteinander verbunden; in dieser Arbeit untersuche ich deshalb auch diese hydrologische Verbindung der Rift-Becken f{\"u}r die Zeit der Afrikanischen Feuchteperiode des fr{\"u}hen Holoz{\"a}ns. Mithilfe der Analyse von digitalen Gel{\"a}ndemodellen, unter Ber{\"u}cksichtigung von geomorphologischen Anzeigern f{\"u}r Seespiegelhochst{\"a}nde, Radiokarbondatierungen und einer {\"U}bersicht {\"u}ber Fossiliendaten konnten zwei kaskadierende Flusssysteme aus diesen Daten abgeleitet werden: eine Flusskaskade in Richtung S{\"u}den und eine in Richtung Norden. Beide Kaskaden haben die derzeit isolierten Becken w{\"a}hrend des fr{\"u}hen Holoz{\"a}ns durch {\"u}berlaufende Seen und eingeschnittene Schluchten miteinander verbunden. Diese hydrologische Verbindung f{\"u}hrte zu der Ausbreitung aquatischer Fauna entlang des Rifts, und gleichzeitig stellte die Wasserscheide zwischen den beiden Flusssystemen den einzigen terrestrischen Ausbreitungskorridor dar, der eine {\"U}berquerung des Kenia-Rifts erm{\"o}glichte. Diese tektonisch-geomorphologische Rekonstruktion erkl{\"a}rt die heute isolierten Vorkommen nilotischer Fischarten in den Riftseen Kenias sowie die isolierten Vorkommen Guineo-Congolischer S{\"a}ugetiere in W{\"a}ldern {\"o}stlich des Kenia-Rifts, die sich {\"u}ber die Wasserscheide im Kenia-Rift ausbreiten konnten. Auf l{\"a}ngeren Zeitskalen sind solche Phasen hydrologischer Verbindung und Phasen der Isolation wiederholt aufgetreten und zeigen sich in wechselnden pal{\"a}o{\"o}kologischen Indikatoren in Sedimentbohrkernen. Hier stelle ich einen Sedimentbohrkern aus dem Koora-Becken des S{\"u}dlichen Kenia-Rifts vor, der einen Datensatz der Pal{\"a}o-Umweltbedingungen der letzten 1 Million Jahre beinhaltet. Dieser Datensatz zeigt, dass etwa vor 400 tausend Jahren die zuvor relativ stabilen Umweltbedingungen zum Erliegen kamen und tektonische, hydrologische und {\"o}kologische Ver{\"a}nderungen dazu f{\"u}hrten, dass die Wasserverf{\"u}gbarkeit, die Grasland-Vergesellschaftungen und die Bedeckung durch Baumvegetation zunehmend st{\"a}rkeren und h{\"a}ufigeren Schwankungen unterlagen. Diese großen Ver{\"a}nderungen fallen zeitlich mit Phasen zusammen, in denen das s{\"u}dliche Becken des Kenia-Rifts von vulkanischer und tektonischer Aktivit{\"a}t besonders betroffen war. Die vorliegende Arbeit zeigt deshalb deutlich, inwiefern die tektonischen und geomorphologischen Gegebenheiten im Zuge einer zeitlich langanhaltenden Extension die Hydrologie, die Pal{\"a}o-Umweltbedingungen sowie die Biodiversit{\"a}t einer Riftzone beeinflussen k{\"o}nnen.},
  language  = {en}
}
@phdthesis{Raatz2019,
  author    = {Raatz, Michael},
  title     = {Strategies within predator-prey interactions - from individuals to ecosystems},
  doi       = {10.25932/publishup-42658},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426587},
  school      = {Universit{\"a}t Potsdam},
  pages     = {175},
  year      = {2019},
  abstract  = {Predator-prey interactions provide central links in food webs. These interaction are directly or indirectly impacted by a number of factors. These factors range from physiological characteristics of individual organisms, over specifics of their interaction to impacts of the environment. They may generate the potential for the application of different strategies by predators and prey. Within this thesis, I modelled predator-prey interactions and investigated a broad range of different factors driving the application of certain strategies, that affect the individuals or their populations. In doing so, I focused on phytoplankton-zooplankton systems as established model systems of predator-prey interactions. At the level of predator physiology I proposed, and partly confirmed, adaptations to fluctuating availability of co-limiting nutrients as beneficial strategies. These may allow to store ingested nutrients or to regulate the effort put into nutrient assimilation. We found that these two strategies are beneficial at different fluctuation frequencies of the nutrients, but may positively interact at intermediate frequencies. The corresponding experiments supported our model results. We found that the temporal structure of nutrient fluctuations indeed has strong effects on the juvenile somatic growth rate of {\itshape Daphnia}. Predator colimitation by energy and essential biochemical nutrients gave rise to another physiological strategy. High-quality prey species may render themselves indispensable in a scenario of predator-mediated coexistence by being the only source of essential biochemical nutrients, such as cholesterol. Thereby, the high-quality prey may even compensate for a lacking defense and ensure its persistence in competition with other more defended prey species. We found a similar effect in a model where algae and bacteria compete for nutrients. Now, being the only source of a compound that is required by the competitor (bacteria) prevented the competitive exclusion of the algae. In this case, the essential compounds were the organic carbon provided by the algae. Here again, being indispensable served as a prey strategy that ensured its coexistence. The latter scenario also gave rise to the application of the two metabolic strategies of autotrophy and heterotrophy by algae and bacteria, respectively. We found that their coexistence allowed the recycling of resources in a microbial loop that would otherwise be lost. Instead, these resources were made available to higher trophic levels, increasing the trophic transfer efficiency in food webs. The predation process comprises the next higher level of factors shaping the predator-prey interaction, besides these factors that originated from the functioning or composition of individuals. Here, I focused on defensive mechanisms and investigated multiple scenarios of static or adaptive combinations of prey defense and predator offense. I confirmed and extended earlier reports on the coexistence-promoting effects of partially lower palatability of the prey community. When bacteria and algae are coexisting, a higher palatability of bacteria may increase the average predator biomass, with the side effect of making the population dynamics more regular. This may facilitate experimental investigations and interpretations. If defense and offense are adaptive, this allows organisms to maximize their growth rate. Besides this fitness-enhancing effect, I found that co-adaptation may provide the predator-prey system with the flexibility to buffer external perturbations. On top of these rather internal factors, environmental drivers also affect predator-prey interactions. I showed that environmental nutrient fluctuations may create a spatio-temporal resource heterogeneity that selects for different predator strategies. I hypothesized that this might favour either storage or acclimation specialists, depending on the frequency of the environmental fluctuations. We found that many of these factors promote the coexistence of different strategies and may therefore support and sustain biodiversity. Thus, they might be relevant for the maintenance of crucial ecosystem functions that also affect us humans. Besides this, the richness of factors that impact predator-prey interactions might explain why so many species, especially in the planktonic regime, are able to coexist.},
  language  = {en}
}
@misc{MooijTrolleJeppesenetal.2010,
  author    = {Mooij, Wolf M. and Trolle, Dennis and Jeppesen, Erik and Arhonditsis, George B. and Belolipetsky, Pavel V. and Chitamwebwa, Deonatus B. R. and Degermendzhy, Andrey G. and DeAngelis, Donald L. and Domis, Lisette Nicole de Senerpont and Downing, Andrea S. and Elliott, J. Alex and Fragoso Jr., Carlos Ruberto and Gaedke, Ursula and Genova, Svetlana N. and Gulati, Ramesh D. and H{\aa}kanson, Lars and Hamilton, David P. and Hipsey, Matthew R. and 't Hoen, Jochem and H{\"u}lsmann, Stephan and Los, F. Hans and Makler-Pick, Vardit and Petzoldt, Thomas and Prokopkin, Igor G. and Rinke, Karsten and Schep, Sebastiaan A. and Tominaga, Koji and Van Dam, Anne A. and Van Nes, Egbert H. and Wells, Scott A. and Janse, Jan H.},
  title     = {Challenges and opportunities for integrating lake ecosystem modelling approaches},
  series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {1326},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42983},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-429839},
  pages     = {35},
  year      = {2010},
  abstract  = {A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models.},
  language  = {en}
}
@article{MooijTrolleJeppesenetal.2010,
  author    = {Mooij, Wolf M. and Trolle, Dennis and Jeppesen, Erik and Arhonditsis, George B. and Belolipetsky, Pavel V. and Chitamwebwa, Deonatus B. R. and Degermendzhy, Andrey G. and DeAngelis, Donald L. and Domis, Lisette Nicole de Senerpont and Downing, Andrea S. and Elliott, J. Alex and Fragoso Jr, Carlos Ruberto and Gaedke, Ursula and Genova, Svetlana N. and Gulati, Ramesh D. and H{\aa}kanson, Lars and Hamilton, David P. and Hipsey, Matthew R. and 't Hoen, Jochem and H{\"u}lsmann, Stephan and Los, F. Hans and Makler-Pick, Vardit and Petzoldt, Thomas and Prokopkin, Igor G. and Rinke, Karsten and Schep, Sebastiaan A. and Tominaga, Koji and Van Dam, Anne A. and Van Nes, Egbert H. and Wells, Scott A. and Janse, Jan H.},
  title     = {Challenges and opportunities for integrating lake ecosystem modelling approaches},
  series = {Aquatic ecology},
  volume    = {44},
  journal   = {Aquatic ecology},
  publisher = {Springer Science + Business Media B.V.},
  address   = {Dordrecht},
  issn      = {1573-5125},
  doi       = {10.1007/s10452-010-9339-3},
  pages     = {633 -- 667},
  year      = {2010},
  abstract  = {A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models.},
  language  = {en}
}
@phdthesis{MendesFerreira2023,
  author    = {Mendes Ferreira, Clara},
  title     = {Indirect, tri-trophic effects of fear on biodiversity},
  doi       = {10.25932/publishup-61102},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-611020},
  school      = {Universit{\"a}t Potsdam},
  pages     = {119},
  year      = {2023},
  abstract  = {Predator-forager interactions are a major factor in evolutionary adaptation of many species, as predators need to gain energy by consuming prey species, and foragers needs to avoid the worst fate of mortality while still consuming resources for energetic gains. In this evolutionary arms race, the foragers have constantly evolved anti-predator behaviours (e.g. foraging activity changes). To describe all these complex changes, researchers developed the framework of the landscape of fear, that is, the spatio-temporal variation of perceived predation risk. This concept simplifies all the involved ecological processes into one framework, by integrating animal biology and distribution with habitat characteristics. Researchers can then evaluate the perception of predation risk in prey species, what are the behavioural responses of the prey and, therefore, understand the cascading effects of landscapes of fear at the resource levels (tri-trophic effects). Although tri-trophic effects are well studied at the predator-prey interaction level, little is known on how the forager-resource interactions are part of the overall cascading effects of landscapes of fear, despite the changes of forager feeding behaviour - that occur with perceived predation risk - affecting directly the level of the resources. This thesis aimed to evaluate the cascading effects of the landscape of fear on biodiversity of resources, and how the feeding behaviour and movement of foragers shaped the final resource species composition (potential coexistence mechanisms). We studied the changes caused by landscapes of fear on wild and captive rodent communities and evaluated: the cascading effects of different landscapes of fear on a tri-trophic system (I), the effects of fear on a forager's movement patterns and dietary preferences (II) and cascading effects of different types of predation risk (terrestrial versus avian, III). In Chapter I, we applied a novel measure to evaluate the cascading effects of fear at the level of resources, by quantifying the diversity of resources left after the foragers gave-up on foraging (diversity at the giving-up density). We tested the measure at different spatial levels (local and regional) and observed that with decreased perceived predation risk, the density and biodiversity of resources also decreased. Foragers left a very dissimilar community of resources based on perceived risk and resources functional traits, and therefore acted as an equalising mechanism. In Chapter II, we wanted to understand further the decision-making processes of rodents in different landscapes of fear, namely, in which resource species rodents decided to forage on (based on three functional traits: size, nutrients and shape) and how they moved depending on perceived predation risk. In safe landscapes, individuals increased their feeding activity and movements and despite the increased costs, they visited more often patches that were further away from their central-place. Despite a preference for the bigger resources regardless of risk, when perceived predation risk was low, individuals changed their preference to fat-rich resources. In Chapter III, we evaluated the cascading effects of two different types of predation risk in rodents: terrestrial (raccoon) versus avian predation risk. Raccoon presence or absence did not alter the rodents feeding behaviour in different landscapes of fear. Rodent's showed risk avoidance behaviours towards avian predators (spatial risk avoidance), but not towards raccoons (lack of temporal risk avoidance). By analysing the effects of fear in tri-trophic systems, we were able to deepen the knowledge of how non-consumptive effects of predators affect the behaviour of foragers, and quantitatively measure the cascading effects at the level of resources with a novel measure. Foragers are at the core of the ecological processes and responses to the landscape of fear, acting as variable coexistence agents for resource species depending on perceived predation risk. This newly found measures and knowledge can be applied to more trophic chains, and inform researchers on biodiversity patterns originating from landscapes of fear.},
  language  = {en}
}
@article{LozadaGobilardStangPirhoferWalzletal.2019,
  author    = {Lozada Gobilard, Sissi Donna and Stang, Susanne and Pirhofer-Walzl, Karin and Kalettka, Thomas and Heinken, Thilo and Schr{\"o}der, Boris and Eccard, Jana and Joshi, Jasmin Radha},
  title     = {Environmental filtering predicts plant-community trait distribution and diversity},
  series = {Ecology and evolution},
  volume    = {9},
  journal   = {Ecology and evolution},
  number    = {4},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {2045-7758},
  doi       = {10.1002/ece3.4883},
  pages     = {1898 -- 1910},
  year      = {2019},
  abstract  = {Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting.We used a system of 46 small wetlands (kettle holes)natural small-scale freshwater habitats rarely considered in nature conservation policiesembedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flat-sloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes.Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes.Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.},
  language  = {en}
}
@misc{LozadaGobilardStangPirhoferWalzletal.2019,
  author    = {Lozada Gobilard, Sissi Donna and Stang, Susanne and Pirhofer-Walzl, Karin and Kalettka, Thomas and Heinken, Thilo and Schr{\"o}der, Boris and Eccard, Jana and Jasmin Radha, Jasmin},
  title     = {Environmental filtering predicts plant-community trait distribution and diversity},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {629},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42484},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-424843},
  pages     = {13},
  year      = {2019},
  abstract  = {Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting. We used a system of 46 small wetlands (kettle holes)—natural small-scale freshwater habitats rarely considered in nature conservation policies—embedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flatsloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes. Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes. Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.},
  language  = {en}
}
@article{LozadaGobilardStangPirhoferWalzletal.2019,
  author    = {Lozada Gobilard, Sissi Donna and Stang, Susanne and Pirhofer-Walzl, Karin and Kalettka, Thomas and Heinken, Thilo and Schr{\"o}der, Boris and Eccard, Jana and Jasmin Radha, Jasmin},
  title     = {Environmental filtering predicts plant-community trait distribution and diversity},
  series = {Ecology and Evolution},
  journal   = {Ecology and Evolution},
  publisher = {John Wiley \& Sons, Inc.},
  address   = {Hoboken},
  issn      = {2045-7758},
  doi       = {10.1002/ece3.4883},
  pages     = {13},
  year      = {2019},
  abstract  = {Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting. We used a system of 46 small wetlands (kettle holes)—natural small-scale freshwater habitats rarely considered in nature conservation policies—embedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flatsloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes. Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes. Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.},
  language  = {en}
}
@phdthesis{Kettner2018,
  author    = {Kettner, Marie Therese},
  title     = {Microbial colonization of microplastic particles in aquatic systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418854},
  school      = {Universit{\"a}t Potsdam},
  pages     = {139},
  year      = {2018},
  abstract  = {The continuously increasing pollution of aquatic environments with microplastics (plastic particles < 5 mm) is a global problem with potential implications for organisms of all trophic levels. For microorganisms, trillions of these floating microplastics particles represent a huge surface area for colonization. Due to the very low biodegradability, microplastics remain years to centuries in the environment and can be transported over thousands of kilometers together with the attached organisms. Since also pathogenic, invasive, or otherwise harmful species could be spread this way, it is essential to study microplastics-associated communities. For this doctoral thesis, eukaryotic communities were analyzed for the first time on microplastics in brackish environments and compared to communities in the surrounding water and on the natural substrate wood. With Illumina MiSeq high-throughput sequencing, more than 500 different eukaryotic taxa were detected on the microplastics samples. Among them were various green algae, dinoflagellates, ciliates, fungi, fungal-like protists and small metazoans such as nematodes and rotifers. The most abundant organisms was a dinoflagellate of the genus Pfiesteria, which could include fish pathogenic and bloom forming toxigenic species. Network analyses revealed that there were numerous interaction possibilities among prokaryotes and eukaryotes in microplastics biofilms. Eukaryotic community compositions on microplastics differed significantly from those on wood and in water, and compositions were additionally distinct among the sampling locations. Furthermore, the biodiversity was clearly lower on microplastics in comparison to the diversity on wood or in the surrounding water. In another experiment, a situation was simulated in which treated wastewater containing microplastics was introduced into a freshwater lake. With increasing microplastics concentrations, the resulting bacterial communities became more similar to those from the treated wastewater. Moreover, the abundance of integrase I increased together with rising concentrations of microplastics. Integrase I is often used as a marker for anthropogenic environmental pollution and is further linked to genes conferring, e.g., antibiotic resistance. This dissertation gives detailed insights into the complexity of prokaryotic and eukaryotic communities on microplastics in brackish and freshwater systems. Even though microplastics provide novel microhabitats for various microbes, they might also transport toxigenic, pathogenic, antibiotic-resistant or parasitic organisms; meaning their colonization can pose potential threats to humans and the environment. Finally, this thesis explains the urgent need for more research as well as for strategies to minimize the global microplastic pollution.},
  language  = {en}
}
@misc{JeltschGrimmReegetal.2019,
  author    = {Jeltsch, Florian and Grimm, Volker and Reeg, Jette and Schl{\"a}gel, Ulrike E.},
  title     = {Give chance a chance},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {742},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43532},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-435320},
  pages     = {19},
  year      = {2019},
  abstract  = {A large part of biodiversity theory is driven by the basic question of what allows species to coexist in spite of a confined number of niches. A substantial theoretical background to this question is provided by modern coexistence theory (MCT), which rests on mathematical approaches of invasion analysis to categorize underlying mechanisms into factors that reduce either niche overlap (stabilizing mechanisms) or the average fitness differences of species (equalizing mechanisms). While MCT has inspired biodiversity theory in the search for these underlying mechanisms, we feel that the strong focus on coexistence causes a bias toward the most abundant species and neglects the plethora of species that are less abundant and often show high local turnover. Given the more stochastic nature of their occurrence, we advocate a complementary cross-level approach that links individuals, small populations, and communities and explicitly takes into account (1) a more complete inclusion of environmental and demographic stochasticity affecting small populations, (2) intraspecific trait variation and behavioral plasticity, and (3) local heterogeneities, interactions, and feedbacks. Focusing on mechanisms that drive the temporary coviability of species rather than infinite coexistence, we suggest a new approach that could be dubbed coviability analysis (CVA). From a modeling perspective, CVA builds on the merged approaches of individual-based modeling and population viability analysis but extends them to the community level. From an empirical viewpoint, CVA calls for a stronger integration of spatiotemporal data on variability and noise, changing drivers, and interactions at the level of individuals. The resulting large volumes of data from multiple sources could be strongly supported by novel techniques tailored to the discovery of complex patterns in high-dimensional data. By complementing MCT through a stronger focus on the coviability of less common species, this approach can help make modern biodiversity theory more comprehensive, predictive, and relevant for applications.},
  language  = {en}
}
@article{JeltschGrimmReegetal.2019,
  author    = {Jeltsch, Florian and Grimm, Volker and Reeg, Jette and Schl{\"a}gel, Ulrike E.},
  title     = {Give chance a chance},
  series = {Ecosphere},
  volume    = {10},
  journal   = {Ecosphere},
  number    = {5},
  publisher = {ESA},
  address   = {Ithaca, NY},
  issn      = {2150-8925},
  doi       = {10.1002/ecs2.2700},
  pages     = {19},
  year      = {2019},
  abstract  = {A large part of biodiversity theory is driven by the basic question of what allows species to coexist in spite of a confined number of niches. A substantial theoretical background to this question is provided by modern coexistence theory (MCT), which rests on mathematical approaches of invasion analysis to categorize underlying mechanisms into factors that reduce either niche overlap (stabilizing mechanisms) or the average fitness differences of species (equalizing mechanisms). While MCT has inspired biodiversity theory in the search for these underlying mechanisms, we feel that the strong focus on coexistence causes a bias toward the most abundant species and neglects the plethora of species that are less abundant and often show high local turnover. Given the more stochastic nature of their occurrence, we advocate a complementary cross-level approach that links individuals, small populations, and communities and explicitly takes into account (1) a more complete inclusion of environmental and demographic stochasticity affecting small populations, (2) intraspecific trait variation and behavioral plasticity, and (3) local heterogeneities, interactions, and feedbacks. Focusing on mechanisms that drive the temporary coviability of species rather than infinite coexistence, we suggest a new approach that could be dubbed coviability analysis (CVA). From a modeling perspective, CVA builds on the merged approaches of individual-based modeling and population viability analysis but extends them to the community level. From an empirical viewpoint, CVA calls for a stronger integration of spatiotemporal data on variability and noise, changing drivers, and interactions at the level of individuals. The resulting large volumes of data from multiple sources could be strongly supported by novel techniques tailored to the discovery of complex patterns in high-dimensional data. By complementing MCT through a stronger focus on the coviability of less common species, this approach can help make modern biodiversity theory more comprehensive, predictive, and relevant for applications.},
  language  = {en}
}
@article{GuttZurellBracegridleetal.2012,
  author    = {Gutt, Julian and Zurell, Damaris and Bracegridle, Thomas J. and Cheung, William and Clark, Melody S. and Convey, Peter and Danis, Bruno and David, Bruno and De Broyer, Claude and di Prisco, Guido and Griffiths, Huw and Laffont, Remi and Peck, Lloyd S. and Pierrat, Benjamin and Riddle, Martin J. and Saucede, Thomas and Turner, John and Verde, Cinzia and Wang, Zhaomin and Grimm, Volker},
  title     = {Correlative and dynamic species distribution modelling for ecological predictions in the Antarctic a cross-disciplinary concept},
  series = {Polar research : a Norwegian journal of Polar research},
  volume    = {31},
  journal   = {Polar research : a Norwegian journal of Polar research},
  number    = {6},
  publisher = {Co-Action Publ.},
  address   = {Jarfalla},
  issn      = {0800-0395},
  doi       = {10.3402/polar.v31i0.11091},
  pages     = {23},
  year      = {2012},
  abstract  = {Developments of future scenarios of Antarctic ecosystems are still in their infancy, whilst predictions of the physical environment are recognized as being of global relevance and corresponding models are under continuous development. However, in the context of environmental change simulations of the future of the Antarctic biosphere are increasingly demanded by decision makers and the public, and are of fundamental scientific interest. This paper briefly reviews existing predictive models applied to Antarctic ecosystems before providing a conceptual framework for the further development of spatially and temporally explicit ecosystem models. The concept suggests how to improve approaches to relating species' habitat description to the physical environment, for which a case study on sea urchins is presented. In addition, the concept integrates existing and new ideas to consider dynamic components, particularly information on the natural history of key species, from physiological experiments and biomolecular analyses. Thereby, we identify and critically discuss gaps in knowledge and methodological limitations. These refer to process understanding of biological complexity, the need for high spatial resolution oceanographic data from the entire water column, and the use of data from biomolecular analyses in support of such ecological approaches. Our goal is to motivate the research community to contribute data and knowledge to a holistic, Antarctic-specific, macroecological framework. Such a framework will facilitate the integration of theoretical and empirical work in Antarctica, improving our mechanistic understanding of this globally influential ecoregion, and supporting actions to secure this biodiversity hotspot and its ecosystem services.},
  language  = {en}
}
@phdthesis{Guill2022,
  author    = {Guill, Christian},
  title     = {Structure, stability and functioning of food webs},
  doi       = {10.25932/publishup-56115},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-561153},
  school      = {Universit{\"a}t Potsdam},
  pages     = {250},
  year      = {2022},
  abstract  = {In this thesis, a collection of studies is presented that advance research on complex food webs in several directions. Food webs, as the networks of predator-prey interactions in ecosystems, are responsible for distributing the resources every organism needs to stay alive. They are thus central to our understanding of the mechanisms that support biodiversity, which in the face of increasing severity of anthropogenic global change and accelerated species loss is of highest importance, not least for our own well-being. The studies in the first part of the thesis are concerned with general mechanisms that determine the structure and stability of food webs. It is shown how the allometric scaling of metabolic rates with the species' body masses supports their persistence in size-structured food webs (where predators are larger than their prey), and how this interacts with the adaptive adjustment of foraging efforts by consumer species to create stable food webs with a large number of coexisting species. The importance of the master trait body mass for structuring communities is further exemplified by demonstrating that the specific way the body masses of species engaging in empirically documented predator-prey interactions affect the predator's feeding rate dampens population oscillations, thereby helping both species to survive. In the first part of the thesis it is also shown that in order to understand certain phenomena of population dynamics, it may be necessary to not only take the interactions of a focal species with other species into account, but to also consider the internal structure of the population. This can refer for example to different abundances of age cohorts or developmental stages, or the way individuals of different age or stage interact with other species. Building on these general insights, the second part of the thesis is devoted to exploring the consequences of anthropogenic global change on the persistence of species. It is first shown that warming decreases diversity in size-structured food webs. This is due to starvation of large predators on higher trophic levels, which suffer from a mismatch between their respiration and ingestion rates when temperature increases. In host-parasitoid networks, which are not size-structured, warming does not have these negative effects, but eutrophication destabilises the systems by inducing detrimental population oscillations. In further studies, the effect of habitat change is addressed. On the level of individual patches, increasing isolation of habitat patches has a similar effect as warming, as it leads to decreasing diversity due to the extinction of predators on higher trophic levels. In this case it is caused by dispersal mortality of smaller and therefore less mobile species on lower trophic levels, meaning that an increasing fraction of their biomass production is lost to the inhospitable matrix surrounding the habitat patches as they become more isolated. It is further shown that increasing habitat isolation desynchronises population oscillations between the patches, which in itself helps species to persist by dampening fluctuations on the landscape level. However, this is counteracted by an increasing strength of local population oscillations fuelled by an indirect effect of dispersal mortality on the feeding interactions. Last, a study is presented that introduces a novel mechanism for supporting diversity in metacommunities. It builds on the self-organised formation of spatial biomass patterns in the landscape, which leads to the emergence of spatio-temporally varying selection pressures that keep local communities permanently out of equilibrium and force them to continuously adapt. Because this mechanism relies on the spatial extension of the metacommunity, it is also sensitive to habitat change. In the third part of the thesis, the consequences of biodiversity for the functioning of ecosystems are explored. The studies focus on standing stock biomass, biomass production, and trophic transfer efficiency as ecosystem functions. It is first shown that increasing the diversity of animal communities increases the total rate of intra-guild predation. However, the total biomass stock of the animal communities increases nevertheless, which also increases their exploitative pressure on the underlying plant communities. Despite this, the plant communities can maintain their standing stock biomass due to a shift of the body size spectra of both animal and plant communities towards larger species with a lower specific respiration rate. In another study it is further demonstrated that the generally positive relationship between diversity and the above mentioned ecosystem functions becomes steeper when not only the feeding interactions but also the numerous non-trophic interactions (like predator interference or competition for space) between the species of an ecosystem are taken into account. Finally, two studies are presented that demonstrate the power of functional diversity as explanatory variable. It is interpreted as the range spanned by functional traits of the species that determine their interactions. This approach allows to mechanistically understand how the ecosystem functioning of food webs with multiple trophic levels is affected by all parts of the food web and why a high functional diversity is required for efficient transportation of energy from primary producers to the top predators. The general discussion draws some synthesising conclusions, e.g. on the predictive power of ecosystem functioning to explain diversity, and provides an outlook on future research directions.},
  language  = {en}
}
@article{EstendorferStempfhuberHauryetal.2017,
  author    = {Estendorfer, Jennifer and Stempfhuber, Barbara and Haury, Paula and Vestergaard, Gisle and Rillig, Matthias C. and Joshi, Jasmin Radha and Schr{\"o}der, Peter and Schloter, Michael},
  title     = {The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.},
  series = {Frontiers in plant science},
  volume    = {8},
  journal   = {Frontiers in plant science},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {1664-462X},
  doi       = {10.3389/fpls.2017.00930},
  pages     = {10},
  year      = {2017},
  abstract  = {In this study, we investigated the impact of different land use intensities (LUI) on the root-associated microbiome of Dactylis glomerata (orchardgrass). For this purpose, eight sampling sites with different land use intensity levels but comparable soil properties were selected in the southwest of Germany. Experimental plots covered land use levels from natural grassland up to intensively managed meadows. We used 16S rRNA gene based barcoding to assess the plant-associated community structure in the endosphere, rhizosphere and bulk soil of D. glomerata. Samples were taken at the reproductive stage of the plant in early summer. Our data indicated that roots harbor a distinct bacterial community, which clearly differed from the microbiome of the rhizosphere and bulk soil. Our results revealed Pseudomonadaceae, Enterobacteriaceae and Comamonadaceae as the most abundant endophytes independently of land use intensity. Rhizosphere and bulk soil were dominated also by Proteobacteria, but the most abundant families differed from those obtained from root samples. In the soil, the effect of land use intensity was more pronounced compared to root endophytes leading to a clearly distinct pattern of bacterial communities under different LUI from rhizosphere and bulk soil vs. endophytes. Overall, a change of community structure on the plant-soil interface was observed, as the number of shared OTUs between all three compartments investigated increased with decreasing land use intensity. Thus, our findings suggest a stronger interaction of the plant with its surrounding soil under low land use intensity. Furthermore, the amount and quality of available nitrogen was identified as a major driver for shifts in the microbiome structure in all compartments.},
  language  = {en}
}
@article{EngelsMedeirosAxfordetal.2020,
  author    = {Engels, Stefan and Medeiros, Andrew S. and Axford, Yarrow and Brooks, Steve and Heiri, Oliver and Luoto, Tomi P. and Nazarova, Larisa B. and Porinchu, David F. and Quinlan, Roberto and Self, Angela E.},
  title     = {Temperature change as a driver of spatial patterns and long-term trends in chironomid (Insecta: Diptera) diversity},
  series = {Global change biology},
  volume    = {26},
  journal   = {Global change biology},
  number    = {3},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {1354-1013},
  doi       = {10.1111/gcb.14862},
  pages     = {1155 -- 1169},
  year      = {2020},
  abstract  = {Anthropogenic activities have led to a global decline in biodiversity, and monitoring studies indicate that both insect communities and wetland ecosystems are particularly affected. However, there is a need for long-term data (over centennial or millennial timescales) to better understand natural community dynamics and the processes that govern the observed trends. Chironomids (Insecta: Diptera: Chironomidae) are often the most abundant insects in lake ecosystems, sensitive to environmental change, and, because their larval exoskeleton head capsules preserve well in lake sediments, they provide a unique record of insect community dynamics through time. Here, we provide the results of a metadata analysis of chironomid diversity across a range of spatial and temporal scales. First, we analyse spatial trends in chironomid diversity using Northern Hemispheric data sets overall consisting of 837 lakes. Our results indicate that in most of our data sets, summer temperature (T-jul) is strongly associated with spatial trends in modern-day chironomid diversity. We observe a strong increase in chironomid alpha diversity with increasing T-jul in regions with present-day T-jul between 2.5 and 14 degrees C. In some areas with T-jul > 14 degrees C, chironomid diversity stabilizes or declines. Second, we demonstrate that the direction and amplitude of change in alpha diversity in a compilation of subfossil chironomid records spanning the last glacial-interglacial transition (similar to 15,000-11,000 years ago) are similar to those observed in our modern data. A compilation of Holocene records shows that during phases when the amplitude of temperature change was small, site-specific factors had a greater influence on the chironomid fauna obscuring the chironomid diversity-temperature relationship. Our results imply expected overall chironomid diversity increases in colder regions such as the Arctic under sustained global warming, but with complex and not necessarily predictable responses for individual sites.},
  language  = {en}
}
@article{EccardMendesFerreiraPeredoArceetal.2022,
  author    = {Eccard, Jana and Mendes Ferreira, Clara and Peredo Arce, Andres and Dammhahn, Melanie},
  title     = {Top-down effects of foraging decisions on local, landscape and regional biodiversity of resources (DivGUD)},
  series = {Ecology letters},
  volume    = {25},
  journal   = {Ecology letters},
  number    = {1},
  publisher = {Wiley-Blackwell},
  address   = {Oxford [u.a.]},
  issn      = {1461-0248},
  doi       = {10.1111/ele.13901},
  pages     = {3 -- 16},
  year      = {2022},
  abstract  = {Foraging by consumers acts as a biotic filtering mechanism for biodiversity at the trophic level of resources. Variation in foraging behaviour has cascading effects on abundance, diversity, and functional trait composition of the community of resource species. Here we propose diversity at giving-up density (DivGUD), i.e. when foragers quit exploiting a patch, as a novel concept and simple measure quantifying cascading effects at multiple spatial scales. In experimental landscapes with an assemblage of plant seeds, patch residency of wild rodents decreased local alpha-DivGUD (via elevated mortality of species with large seeds) and regional gamma-DivGUD, while dissimilarity among patches in a landscape (beta-DivGUD) increased. By linking theories of adaptive foraging behaviour with community ecology, DivGUD allows to investigate cascading indirect predation effects, e.g. the ecology-of-fear framework, feedbacks between functional trait composition of resource species and consumer communities, and effects of inter-individual differences among foragers on the biodiversity of resource communities.},
  language  = {en}
}