@misc{SchoenemannLaschewskyRosenhahn2018,
  author    = {Sch{\"o}nemann, Eric and Laschewsky, Andr{\´e} and Rosenhahn, Axel},
  title     = {Exploring the long-term hydrolytic behavior of zwitterionic polymethacrylates and polymethacrylamides},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {1091},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-47305},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-473052},
  pages     = {25},
  year      = {2018},
  abstract  = {The hydrolytic stability of polymers to be used for coatings in aqueous environments, for example, to confer anti-fouling properties, is crucial. However, long-term exposure studies on such polymers are virtually missing. In this context, we synthesized a set of nine polymers that are typically used for low-fouling coatings, comprising the well-established poly(oligoethylene glycol methylether methacrylate), poly(3-(N-2-methacryloylethyl-N,N-dimethyl) ammoniopropanesulfonate) ("sulfobetaine methacrylate"), and poly(3-(N-3-methacryamidopropyl-N,N-dimethyl)ammoniopropanesulfonate) ("sulfobetaine methacrylamide") as well as a series of hitherto rarely studied polysulfabetaines, which had been suggested to be particularly hydrolysis-stable. Hydrolysis resistance upon extended storage in aqueous solution is followed by ¹H NMR at ambient temperature in various pH regimes. Whereas the monomers suffered slow (in PBS) to very fast hydrolysis (in 1 M NaOH), the polymers, including the polymethacrylates, proved to be highly stable. No degradation of the carboxyl ester or amide was observed after one year in PBS, 1 M HCl, or in sodium carbonate buffer of pH 10. This demonstrates their basic suitability for anti-fouling applications. Poly(sulfobetaine methacrylamide) proved even to be stable for one year in 1 M NaOH without any signs of degradation. The stability is ascribed to a steric shielding effect. The hemisulfate group in the polysulfabetaines, however, was found to be partially labile.},
  language  = {en}
}
@misc{SchulzeWehrholdHille2018,
  author    = {Schulze, Sven and Wehrhold, Michel and Hille, Carsten},
  title     = {Femtosecond-pulsed laser written and etched fiber bragg gratings for fiber-optical biosensing},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {1073},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-47269},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472692},
  pages     = {22},
  year      = {2018},
  abstract  = {We present the development of a label-free, highly sensitive fiber-optical biosensor for online detection and quantification of biomolecules. Here, the advantages of etched fiber Bragg gratings (eFBG) were used, since they induce a narrowband Bragg wavelength peak in the reflection operation mode. The gratings were fabricated point-by-point via a nonlinear absorption process of a highly focused femtosecond-pulsed laser, without the need of prior coating removal or specific fiber doping. The sensitivity of the Bragg wavelength peak to the surrounding refractive index (SRI), as needed for biochemical sensing, was realized by fiber cladding removal using hydrofluoric acid etching. For evaluation of biosensing capabilities, eFBG fibers were biofunctionalized with a single-stranded DNA aptamer specific for binding the C-reactive protein (CRP). Thus, the CRP-sensitive eFBG fiber-optical biosensor showed a very low limit of detection of 0.82 pg/L, with a dynamic range of CRP detection from approximately 0.8 pg/L to 1.2 µg/L. The biosensor showed a high specificity to CRP even in the presence of interfering substances. These results suggest that the proposed biosensor is capable for quantification of CRP from trace amounts of clinical samples. In addition, the adaption of this eFBG fiber-optical biosensor for detection of other relevant analytes can be easily realized.},
  language  = {en}
}
@misc{SchneiderGuenterTaubert2018,
  author    = {Schneider, Matthias and G{\"u}nter, Christina and Taubert, Andreas},
  title     = {Co-deposition of a hydrogel/calcium phosphate hybrid layer on 3D printed poly(lactic acid) scaffolds via dip coating},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {1057},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-47442},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-474427},
  pages     = {21},
  year      = {2018},
  abstract  = {The article describes the surface modification of 3D printed poly(lactic acid) (PLA) scaffolds with calcium phosphate (CP)/gelatin and CP/chitosan hybrid coating layers. The presence of gelatin or chitosan significantly enhances CP co-deposition and adhesion of the mineral layer on the PLA scaffolds. The hydrogel/CP coating layers are fairly thick and the mineral is a mixture of brushite, octacalcium phosphate, and hydroxyapatite. Mineral formation is uniform throughout the printed architectures and all steps (printing, hydrogel deposition, and mineralization) are in principle amenable to automatization. Overall, the process reported here therefore has a high application potential for the controlled synthesis of biomimetic coatings on polymeric biomaterials.},
  language  = {en}
}
@phdthesis{Zimmermann2018,
  author    = {Zimmermann, Marc},
  title     = {Multifunctional patchy silica particles via microcontact printing},
  doi       = {10.25932/publishup-42773},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427731},
  school      = {Universit{\"a}t Potsdam},
  pages     = {IX, 121, xiii},
  year      = {2018},
  abstract  = {This research addressed the question, if it is possible to simplify current microcontact printing systems for the production of anisotropic building blocks or patchy particles, by using common chemicals while still maintaining reproducibility, high precision and tunability of the Janus-balance Chapter 2 introduced the microcontact printing materials as well as their defined electrostatic interactions. In particular polydimethylsiloxane stamps, silica particles and high molecular weight polyethylenimine ink were mainly used in this research. All of these components are commercially available in large quantities and affordable, which gives this approach a huge potential for further up-scaling developments. The benefits of polymeric over molecular inks was described including its flexible influence on the printing pressure. With this alteration of the µCP concept, a new method of solvent assisted particle release mechanism enabled the switch from two-dimensional surface modification to three-dimensional structure printing on colloidal silica particles, without changing printing parameters or starting materials. This effect opened the way to use the internal volume of the achieved patches for incorporation of nano additives, introducing additional physical properties into the patches without alteration of the surface chemistry. The success of this system and its achievable range was further investigated in chapter 3 by giving detailed information about patch geometry parameters including diameter, thickness and yield. For this purpose, silica particles in a size range between 1µm and 5µm were printed with different ink concentrations to change the Janus-balance of these single patched particles. A necessary intermediate step, consisting of air-plasma treatment, for the production of trivalent particles using "sandwich" printing was discovered and comparative studies concerning the patch geometry of single and double patched particles were conducted. Additionally, the usage of structured PDMS stamps during printing was described. These results demonstrate the excellent precision of this approach and opens the pathway for even greater accuracy as further parameters can be finely tuned and investigated, e.g. humidity and temperature during stamp loading. The performance of these synthesized anisotropic colloids was further investigated in chapter 4, starting with behaviour studies in alcoholic and aqueous dispersions. Here, the stability of the applied patches was studied in a broad pH range, discovering a release mechanism by disabling the electrostatic bonding between particle surface and polyelectrolyte ink. Furthermore, the absence of strong attractive forces between divalent particles in water was investigated using XPS measurements. These results lead to the conclusion that the transfer of small PDMS oligomers onto the patch surface is shielding charges, preventing colloidal agglomeration. However, based on this knowledge, further patch modifications for particle self-assembly were introduced including physical approaches using magnetic nano additives, chemical patch functionalization with avidin-biotin or the light responsive cyclodextrin-arylazopyrazoles coupling as well as particle surface modification for the synthesis of highly amphiphilic colloids. The successful coupling, its efficiency, stability and behaviour in different solvents were evaluated to find a suitable coupling system for future assembly experiments. Based on these results the possibility of more sophisticated structures by colloidal self-assembly is given. Certain findings needed further analysis to understand their underlying mechanics, including the relatively broad patch diameter distribution and the decreasing patch thickness for smaller silica particles. Mathematical assumptions for both effects are introduced in chapter 5. First, they demonstrate the connection between the naturally occurring particle size distribution and the broadening of the patch diameter, indicating an even higher precision for this µCP approach. Second, explaining the increase of contact area between particle and ink surface due to higher particle packaging, leading to a decrease in printing pressure for smaller particles. These calculations ultimately lead to the development of a new mechanical microcontact printing approach, using centrifugal forces for high pressure control and excellent parallel alignment of printing substrates. First results with this device and the comparison with previously conducted by-hand experiments conclude this research. It furthermore displays the advantages of such a device for future applications using a mechanical printing approach, especially for accessing even smaller nano particles with great precision and excellent yield. In conclusion, this work demonstrates the successful adjustment of the µCP approach using commercially available and affordable silica particles and polyelectrolytes for high flexibility, reduced costs and higher scale-up value. Furthermore, its was possible to increase the modification potential by introducing three-dimensional patches for additional functionalization volume. While keeping a high colloidal stability, different coupling systems showed the self-assembly capabilities of this toolbox for anisotropic particles.},
  language  = {en}
}
@phdthesis{Kumru2018,
  author    = {Kumru, Baris},
  title     = {Utilization of graphitic carbon nitride in dispersed media},
  doi       = {10.25932/publishup-42733},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427339},
  school      = {Universit{\"a}t Potsdam},
  pages     = {III, 190},
  year      = {2018},
  abstract  = {Utilization of sunlight for energy harvesting has been foreseen as sustainable replacement for fossil fuels, which would also eliminate side effects arising from fossil fuel consumption such as drastic increase of CO2 in Earth atmosphere. Semiconductor materials can be implemented for energy harvesting, and design of ideal energy harvesting devices relies on effective semiconductor with low recombination rate, ease of processing, stability over long period, non-toxicity and synthesis from abundant sources. Aforementioned criteria have attracted broad interest for graphitic carbon nitride (g-CN) materials, metal-free semiconductor which can be synthesized from low cost and abundant precursors. Furthermore, physical properties such as band gap, surface area and absorption can be tuned. g-CN was investigated as heterogeneous catalyst, with diversified applications from water splitting to CO2 reduction and organic coupling reactions. However, low dispersibility of g-CN in water and organic solvents was an obstacle for future improvements. Tissue engineering aims to mimic natural tissues mechanically and biologically, so that synthetic materials can replace natural ones in future. Hydrogels are crosslinked networks with high water content, therefore are prime candidates for tissue engineering. However, the first requirement is synthesis of hydrogels with mechanical properties that are matching to natural tissues. Among different approaches for reinforcement, nanocomposite reinforcement is highly promising. This thesis aims to investigate aqueous and organic dispersions of g-CN materials. Aqueous g-CN dispersions were utilized for visible light induced hydrogel synthesis, where g-CN acts as reinforcer and photoinitiator. Varieties of methodologies were presented for enhancing g-CN dispersibility, from co-solvent method to prepolymer formation, and it was shown that hydrogels with diversified mechanical properties (from skin-like to cartilage-like) are accessible via g-CN utilization. One pot photografting method was introduced for functionalization of g-CN surface which provides functional groups towards enhanced dispersibility in aqueous and organic media. Grafting vinyl thiazole groups yields stable additive-free organodispersions of g-CN which are electrostatically stabilized with increased photophysical properties. Colloidal stability of organic systems provides transparent g-CN coatings and printing g-CN from commercial inkjet printers. Overall, application of g-CN in dispersed media is highly promising, and variety of materials can be accessible via utilization of g-CN and visible light with simple chemicals and synthetic conditions. g-CN in dispersed media will bridge emerging research areas from tissue engineering to energy harvesting in near future.},
  language  = {en}
}
@phdthesis{Heiden2018,
  author    = {Heiden, Sophia L.},
  title     = {Water at α-alumina surfaces},
  doi       = {10.25932/publishup-42636},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426366},
  school      = {Universit{\"a}t Potsdam},
  pages     = {124},
  year      = {2018},
  abstract  = {The (0001) surface of α-Al₂O₃ is the most stable surface cut under UHV conditions and was studied by many groups both theoretically and experimentally. Reaction barriers computed with GGA functionals are known to be underestimated. Based on an example reaction at the (0001) surface, this work seeks to improve this rate by applying a hybrid functional method and perturbation theory (LMP2) with an atomic orbital basis, rather than a plane wave basis. In addition to activation barriers, we calculate the stability and vibrational frequencies of water on the surface. Adsorption energies were compared to PW calculations and confirmed PBE+D2/PW stability results. Especially the vibrational frequencies with the B3LYP hybrid functional that have been calculated for the (0001) surface are in good agreement with experimental findings. Concerning the barriers and the reaction rate constant, the expectations are fully met. It could be shown that recalculation of the transition state leads to an increased barrier, and a decreased rate constant when hybrid functionals or LMP2 are applied. Furthermore, the molecular beam scattering of water on (0001) surface was studied. In a previous work by Hass the dissociation was studied by AIMD of molecularly adsorbed water, referring to an equilibrium situation. The experimental method to obtaining this is pinhole dosing. In contrast to this earlier work, the dissociation process of heavy water that is brought onto the surface from a molecular beam source was modeled in this work by periodic ab initio molecular dynamics simulations. This experimental method results in a non-equilibrium situation. The calculations with different surface and beam models allow us to understand the results of the non-equilibrium situation better. In contrast to a more equilibrium situation with pinhole dosing, this gives an increase in the dissociation probability, which could be explained and also understood mechanistically by those calculations. In this work good progress was made in understanding the (1120) surface of α-Al₂O₃ in contact with water in the low-coverage regime. This surface cut is the third most stable one under UHV conditions and has not been studied to a great extent yet. After optimization of the clean, defect free surface, the stability of different adsorbed species could be classified. One molecular minimum and several dissociated species could be detected. Starting from these, reaction rates for various surface reactions were evaluated. A dissociation reaction was shown to be very fast because the molecular minimum is relatively unstable, whereas diffusion reactions cover a wider range from fast to slow. In general, the (112‾0) surface appears to be much more reactive against water than the (0001) surface. In addition to reactivity, harmonic vibrational frequencies were determined for comparison with the findings of the experimental "Interfacial Molecular Spectroscopy" group from Fritz-Haber institute in Berlin. Especially the vibrational frequencies of OD species could be assigned to vibrations from experimental SFG spectra with very good agreement. Also, lattice vibrations were studied in close collaboration with the experimental partners. They perform SFG spectra at very low frequencies to get deep into the lattice vibration region. Correspondingly, a bigger slab model with greater expansion perpendicular to the surface was applied, considering more layers in the bulk. Also with the lattice vibrations we could obtain reasonably good agreement in terms of energy differences between the peaks.},
  language  = {en}
}
@phdthesis{Cheng2018,
  author    = {Cheng, Xiao},
  title     = {Controlled solvent vapor annealing of block copolymer films},
  doi       = {10.25932/publishup-42417},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-424179},
  school      = {Universit{\"a}t Potsdam},
  pages     = {X, 166},
  year      = {2018},
  abstract  = {This project was focused on exploring the phase behavior of poly(styrene)187000-block-poly(2-vinylpyridine)203000 (SV390) with high molecular weight (390 kg/mol) in thin films, in which the self-assembly of block copolymers (BCPs) was realized via thermo-solvent annealing. The advanced processing technique of solvent vapor treatment provides controlled and stable conditions. In Chapter 3, the factors to influence the annealing process and the swelling behavior of homopolymers are presented and discussed. The swelling behavior of BCP in films is controlled by the temperature of the vapor and of the substrate, on one hand, and variation of the saturation of the solvent vapor atmosphere (different solvents), on the other hand. Additional factors like the geometry and material of the chamber, the type of flow inside the chamber etc. also influence the reproducibility and stability of the processing. The slightly selective solvent vapor of chloroform gives 10\% more swelling of P2VP than PS in films with thickness of ~40 nm. The tunable morphology in ultrathin films of high molecular weight BCP (SV390) was investigated in Chapter 4. First, the swelling behavior can be precisely tuned by temperature and/or vapor flow separately, which provided information for exploring the multiple-parameter-influenced segmental chain mobility of polymer films. The equilibrium state of SV390 in thin films influenced by temperature was realized at various temperatures with the same degree of swelling. Various methods including characterization with SFM, metallization and RIE were used to identify the morphology of films as porous half-layer with PS dots and P2VP matrix. The kinetic investigations demonstrate that on substrates with either weak or strong interaction the original morphology of the BCP with high molecular weight is changed very fast within 5 min, and the further annealing serves for annihilation of defects. The morphological development of symmetric BCP in films with thickness increasing from half-layer to one-layer influenced by confinement factors of gradient film thicknesses and various surface properties of substrates was studied in Chapter 5. SV390 and SV99 films show bulk lamella-forming morphology after slightly selective solvent vapor (chloroform) treatment. SV99 films show cylinder-forming morphology under strongly selective solvent vapor (toluene) treatment since the asymmetric structure (caused by toluene uptake in PS blocks only) of SV99 block copolymer during annealing. Both kinds of morphology (lamella and cylinder) are influenced by the film thickness. The annealed morphology of SV390 and SV99 influenced by the combination of confined film and substrate property is similar to the morphology on flat silicon wafers. In this chapter the gradients in the film thickness and surface properties of the substrates with regard to their influence on the morphological development in thin BCP films are presented. Directed self-assembly (graphoepitaxy) of this SV390 was also investigated to compare with systematically reported SV99. In Chapter 6 an approach to induced oriented microphase separation in thick block copolymer films via treatment with the oriented vapor flow using mini-extruder is envisaged to be an alternative to existing methodologies, e.g. via non-solvent-induced phase separation. The preliminary tests performed in this study confirm potential perspective of this method, which alters the structure through the bulk of the film (as revealed by SAXS measurements), but more detailed studies have to be conducted in order to optimize the preparation.},
  language  = {en}
}
@phdthesis{Grunert2018,
  author    = {Grunert, Bianca},
  title     = {Entwicklung von Markierungsreagenzien f{\"u}r die bildgebende Diagnostik},
  doi       = {10.25932/publishup-42283},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422830},
  school      = {Universit{\"a}t Potsdam},
  pages     = {155},
  year      = {2018},
  abstract  = {Die intrazellul{\"a}re Markierung mit geeigneten Reagenzien erm{\"o}glicht ihre bildgebende Darstellung in lebenden Organismen. Dieses Verfahren (auch „Zell-Tracking" genannt) wird in der Grundlagenforschung zur Entwicklung zellul{\"a}rer Therapien, f{\"u}r die Erforschung pathologischer Prozesse, wie der Metastasierung, sowie f{\"u}r Therapiekontrollen eingesetzt. Besondere Bedeutung haben in den letzten Jahren zellul{\"a}re Therapien mit Stammzellen erlangt, da sie großes Potential bei der Regeneration von Geweben bei Krankheiten wie Morbus Parkinson oder Typ-1-Diabetes versprechen. F{\"u}r die Entwicklung einer zellul{\"a}ren Therapie sind Informationen {\"u}ber den Verbleib der applizierten Zellen in vivo (Homing-Potential), {\"u}ber ihre Zellphysiologie sowie {\"u}ber die Entstehung m{\"o}glicher Entz{\"u}ndungen notwendig. Das Ziel der vorliegenden Arbeit war daher die Synthese von Markierungsreagenzien, die nicht nur eine effiziente Zellmarkierung erm{\"o}glichen, sondern einen synergistischen Effekt hinsichtlich des modalit{\"a}ts{\"u}bergreifenden Einsatzes in den bildgebenden Verfahren MRT und Laser-Ablation(LA)-ICP-MS erlauben. Die MRT-Bildgebung erm{\"o}glicht die nicht invasive Nachverfolgung markierter Zellen in vivo und die LA-ICP-MS die anschließende ex vivo Analytik zur Darstellung der Elementverteilung (Bioimaging) in einer Biopsieprobe oder in einem Gewebeschnitt. F{\"u}r diese Zwecke wurden zwei verschiedene Markierungsreagenzien mit dem kontrastgebenden Element Gadolinium synthetisiert. Gadolinium eignet sich aufgrund seines hohen magnetischen Moments hervorragend f{\"u}r die MRT-Bildgebung und da es in Biomolek{\"u}len nicht nat{\"u}rlich vorkommt, konnten die Reagenzien gleichermaßen f{\"u}r die Zellmarkierung und das Bioimaging mit der LA-ICP-MS untersucht werden. F{\"u}r die Synthese eines makromolekularen Reagenzes wurde das kommerziell verf{\"u}gbare Dendrimer G5-PAMAM {\"u}ber bifunktionelle Linker mit dem Chelator DOTA funktionalisiert, um anschließend Gadolinium zu komplexieren. Ein zweites, nanopartikul{\"a}res Reagenz wurde {\"u}ber eine Solvothermal-Synthese erhalten, bei der Ln:GdVO4-Nanokristalle mit einer funktionellen Polyacryls{\"a}ure(PAA)-H{\"u}lle dargestellt wurden. Die Dotierung der Ln:GdVO4-PAA Nanokristalle mit verschiedenen Lanthanoiden (Ln=Eu, Tb) zeigte ihre prinzipielle Multiplexf{\"a}higkeit in der LA-ICP-MS. Beide Markierungsreagenzien zeichneten sich durch gute Biovertr{\"a}glichkeiten und r1-Relaxivit{\"a}ten aus, was zudem ihr Potential f{\"u}r Anwendungen als pr{\"a}klinische „blood-pool" MRT-Kontrastmittel belegte. Die Untersuchung der Zellmarkierung erfolgte anhand einer Tumorzelllinie und einer Stammzelllinie, wobei beide Zellarten erfolgreich intrazellul{\"a}r mit beiden Reagenzien markiert wurden. Nach der Zellmarkierung veranschaulichte die in vitro MRT-Bildgebung von Zell-Phantomen eine deutlichere Kontrastverst{\"a}rkung der Zellen nach der Markierung mit den Nanokristallen im Vergleich zum kommerziellen Kontrastmittel Magnevist®. Die hohe Effizienz der Zellmarkierung mit den Nanokristallen und die damit verbundenen hohen Signalintensit{\"a}ten in einer einzelnen Zelle erlaubten beim Bioimaging mit der LA-ICP-MS, Messungen bis zu einer Aufl{\"o}sung von 4 µm Laser Spot Size. Nach der Zellmarkierung mit den DOTA(Gd3+)-funktionalisierten G5-PAMAM Dendrimeren waren hingegen Aufnahmen mit der LA-ICP-MS nur bis zu einer Aufl{\"o}sung von 12 µm Laser Spot Size m{\"o}glich. Insgesamt waren die Ln:GdVO4-PAA Nanokristalle mit gr{\"o}ßerer Ausbeute und kosteng{\"u}nstiger herstellbar als die DOTA(Gd3+)-funktionalisierten G5-PAMAM Dendrimere und zeigten zudem eine effizientere Zellmarkierung. Die Ln:GdVO4-PAA Nanokristalle erscheinen somit f{\"u}r das Zell-Tracking als besonders vielversprechend. Darauf aufbauend wurden die Nanokristalle zur Etablierung der Antik{\"o}rper-Konjugation ausgew{\"a}hlt, was sie f{\"u}r die molekulare in vivo Bildgebung sowie f{\"u}r die Immuno-Bildgebung von Gewebeschnitten oder Biopsie-Proben mit der LA-ICP-MS anwendbar macht.},
  language  = {de}
}
@phdthesis{Vogel2018,
  author    = {Vogel, Stefanie},
  title     = {Sequence dependency of photon and electron induced DNA strand breaks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-419669},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xii, 117},
  year      = {2018},
  abstract  = {Deoxyribonucleic acid (DNA) is the carrier of human genetic information and is exposed to environmental influences such as the ultraviolet (UV) fraction of sunlight every day. The photostability of the DNA against UV light is astonishing. Even if the DNA bases have a strong absorption maximum at around 260 nm/4.77 eV, their quantum yield of photoproducts remains very low 1. If the photon energies exceed the ionization energy (IE) of the nucleobases ( ̴ 8-9 eV) 2, the DNA can be severely damaged. Photoexcitation and -ionization reactions occur, which can induce strand breaks in the DNA. The efficiency of the excitation and ionization induced strand breaks in the target DNA sequences are represented by cross sections. If Si as a substrate material is used in the VUV irradiation experiments, secondary electrons with an energy below 3.6 eV are generated from the substrate. This low energy electrons (LEE) are known to induce dissociative electron attachment (DEA) in DNA and with it DNA strand breakage very efficiently. LEEs play an important role in cancer radiation therapy, since they are generated secondarily along the radiation track of ionizing radiation. In the framework of this thesis, different single stranded DNA sequences were irradiated with 8.44 eV vacuum UV (VUV) light and cross sections for single strand breaks (SSB) were determined. Several sequences were also exposed to secondary LEEs, which additionally contributed to the SSBs. First, the cross sections for SSBs depending on the type of nucleobases were determined. Both types of DNA sequences, mono-nucleobase and mixed sequences showed very similar results upon VUV radiation. The additional influence of secondarily generated LEEs resulted in contrast in a clear trend for the SSB cross sections. In this, the polythymine sequence had the highest cross section for SSBs, which can be explained by strong anionic resonances in this energy range. Furthermore, SSB cross sections were determined as a function of sequence length. This resulted in an increase in the strand breaks to the same extent as the increase in the geometrical cross section. The longest DNA sequence (20 nucleotides) investigated in this series, however, showed smaller cross section values for SSBs, which can be explained by conformational changes in the DNA. Moreover, several DNA sequences that included the radiosensitizers 5-Bromouracil (5BrU) and 8-Bromoadenine (8BrA) were investigated and the corresponding SSB cross sections were determined. It was shown that 5BrU reacts very strongly to VUV radiation leading to high strand break yields, which showed in turn a strong sequence-dependency. 8BrA, on the other hand, showed no sensitization to the applied VUV radiation, since almost no increase in strand breakage yield was observed in comparison to non-modified DNA sequences. In order to be able to identify the mechanisms of radiation damage by photons, the IEs of certain DNA sequences were further explored using photoionization tandem mass spectrometry. By varying the DNA sequence, both the IEs depending on the type of nucleobase as well as on the DNA strand length could be identified and correlated to the SSB cross sections. The influence of the IE on the photoinduced reaction in the brominated DNA sequences could be excluded.},
  language  = {en}
}
@phdthesis{Choi2018,
  author    = {Choi, Youngeun},
  title     = {DNA origami structures as versatile platforms for nanophotonics},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-421483},
  school      = {Universit{\"a}t Potsdam},
  pages     = {125},
  year      = {2018},
  abstract  = {Nanophotonics is the field of science and engineering aimed at studying the light-matter interactions on the nanoscale. One of the key aspects in studying such optics at the nanoscale is the ability to assemble the material components in a spatially controlled manner. In this work, DNA origami nanostructures were used to self-assemble dye molecules and DNA coated plasmonic nanoparticles. Optical properties of dye nanoarrays, where the dyes were arranged at distances where they can interact by F{\"o}rster resonance energy transfer (FRET), were systematically studied according to the size and arrangement of the dyes using fluorescein (FAM) as the donor and cyanine 3 (Cy 3) as the acceptor. The optimized design, based on steady-state and time-resolved fluorometry, was utilized in developing a ratiometric pH sensor with pH-inert coumarin 343 (C343) as the donor and pH-sensitive FAM as the acceptor. This design was further applied in developing a ratiometric toxin sensor, where the donor C343 is unresponsive and FAM is responsive to thioacetamide (TAA) which is a well-known hepatotoxin. The results indicate that the sensitivity of the ratiometric sensor can be improved by simply arranging the dyes into a well-defined array. The ability to assemble multiple fluorophores without dye-dye aggregation also provides a strategy to amplify the signal measured from a fluorescent reporter, and was utilized here to develop a reporter for sensing oligonucleotides. By incorporating target capturing sequences and multiple fluorophores (ATTO 647N dye molecules), a reporter for microbead-based assay for non-amplified target oligonucleotide sensing was developed. Analysis of the assay using VideoScan, a fluorescence microscope-based technology capable of conducting multiplex analysis, showed the DNA origami nanostructure based reporter to have a lower limit of detection than a single stranded DNA reporter. Lastly, plasmonic nanostructures were assembled on DNA origami nanostructures as substrates to study interesting optical behaviors of molecules in the near-field. Specifically, DNA coated gold nanoparticles, silver nanoparticles, and gold nanorods, were placed on the DNA origami nanostructure aiming to study surface-enhanced fluorescence (SEF) and surface-enhanced Raman scattering (SERS) of molecules placed in the hotspot of coupled plasmonic structures.},
  language  = {en}
}
@phdthesis{Schulze2018,
  author    = {Schulze, Sven},
  title     = {Entwicklung und Charakterisierung optischer Biosensorplattformen basierend auf photonischen Kristallen und Faser-Bragg-Gitter},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422139},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xviii, 149, A-23, B-2, C-8},
  year      = {2018},
  abstract  = {In dieser Arbeit steht die Entwicklung einer Sensorplattform f{\"u}r biochemische Anwendungen, welche auf einem optischen Detektionsprinzips beruht, im Vordergrund. W{\"a}hrend der Entwicklung wurden zwei komplement{\"a}re Konzeptideen behandelt, zum einen ein Sensor, der auf photonischen Kristallen und Wellenleiterstrukturen basiert und zum anderen einen faserbasierten Sensor, der chemisch modifizierte Faser-Bragg-Gitter enth{\"a}lt. Das optische Detektionsprinzip in beiden Sensorideen ist die resultierende Brechungsindex{\"a}nderung als messbare physikochemische Kenngr{\"o}ße. Das aus der Natur bekannte Ph{\"a}nomen der photonischen Kristalle, das u. a. bei Opalen und bei Schmetterlingen zu finden ist, wurde bereits 1887 von Lord Rayleigh beschrieben. Er beschrieb die optischen Eigenschaften von periodischen mehrschichtigen Filmen, welche als vereinfachtes Modell eines eindimensionalen photonischen Kristalls verstanden werden k{\"o}nnen. Die Periodizit{\"a}t der Brechungsindex{\"a}nderung resultiert in einem optischen Filter f{\"u}r Frequenzen in einem bestimmten spektralen Bereich, weshalb dann dort keine Lichtausbreitung mehr m{\"o}glich ist. Wird dieses System aber durch eine Defektstelle in der Brechungsindexperiodizit{\"a}t gest{\"o}rt, sodass daraus zwei perfekt periodische Systeme entstehen, ist die Lichtausbreitung f{\"u}r eine bestimmte Frequenz dennoch m{\"o}glich. In der Folge resultiert daraus ein schmalbandiges Signal im Transmissionsspektrum. Die erlaubte Frequenz ist dabei u. a. abh{\"a}ngig vom Brechungsindexunterschied des periodischen Systems, d.h. Ver{\"a}nderung des Brechungsindexes einer Schicht f{\"u}hrt zu einer spektralen Verschiebung der erlaubten Frequenz, dadurch kann dieses Sensorkonzept f{\"u}r biochemische Sensorik ausgenutzt werden [1]. Diese Entwicklung des auf photonischen Kristallen basierenden Sensors war eine Kooperation mit dem Industriepartner „Nanoplus GmbH". In der Doktorarbeit wurden Simulationen und praktischen Arbeiten zur Designentwicklung des Sensors und die Arbeiten an einem ersten Modellaufbau f{\"u}r die biochemischen Anwendungen durchgef{\"u}hrt. F{\"u}r den faserbasierten Sensor wurden Faser-Bragg-Gitter in den Faserkern hineingeschrieben. Hill et al. entdeckten 1978, dass solche Gitterstrukturen genau wie photonische Kristalle als optische Filter fungieren [2]. Die Gitter bestehen dabei aus {\"A}nderungen des Brechungsindexes im Faserkern. Im Laufe der n{\"a}chsten vierzig Jahren wurden verschiedene Einschreibetechniken und Gitterstrukturen entwickelt, weshalb die Eigenschaften der jeweiligen Gitterstrukturen variieren. Eine solche Gitterstruktur sind u. a. die Faser-Bragg-Gitter, deren Gitterperiode, d. h. die Abst{\"a}nde der Brechungsindexmodifikationen, sich im Nanometer- bis Mikrometerbereich befinden. Aufgrund der kleinen Gitterperiode wird eine r{\"u}ckw{\"a}rtsf{\"u}hrende Welle im Kern f{\"u}r eine bestimmte Frequenz bzw. Wellenl{\"a}nge, der Bragg-Wellenl{\"a}nge, erzeugt. Im Endeffekt resultiert daraus ein schmalbandiges Signal sowohl im Transmissionsspektrum, als auch im Reflexionsspektrum. Die Resonanzwellenl{\"a}nge ist dabei proportional zu der Gitterperiode und dem effektiven Brechungsindex, welcher vom Brechungsindex des Kerns und des kernumgebenen Materials abh{\"a}ngig ist. Letztlich eignet sich diese Technik f{\"u}r physikochemische Sensorik. Im Rahmen dieser Arbeit wurden die Gitter mit Hilfe einer relativen neuen Herstellungsmethode in die Fasern geschrieben [3]. Anschließend stand die Entwicklung eines Biosensors im Vordergrund, wobei zun{\"a}chst ein Protokoll zum {\"A}tzen der Faser mit Flusss{\"a}ure entwickelt worden ist, dass das System sensitiv zum umgebenen Brechungsindex macht. Am Ende wurde ein Modellaufbau realisiert, indem ein Modellsystem, hier die Detektion vom C-reaktiven Protein mittels spezifischen einzelstr{\"a}ngigen DNS-Aptameren, erfolgreich getestet und quantifiziert worden ist. 1 Mandal, S.; Erickson, D. Nanoscale Optofluidic Sensor Arrays. Opt. Express 2008, 16 (3), 1623-1631. 2 Hill, K. O.; Fujii, Y.; Johnson, D. C.; Kawasaki, B. S. Photosensitivity in Optical Fiber Waveguides: Application to Reflection Filter Fabrication. Appl. Phys. Lett. 1978, 32 (10), 647-649. 3 Mart{\´i}nez, A.; Dubov, M.; Khrushchev, I.; Bennion, I. Direct Writing of Fibre Bragg Gratings by Femtosecond Laser. Electron. Lett. 2004, 40 (19), 1170.},
  language  = {de}
}
@phdthesis{Jensen2018,
  author    = {Jensen, Anders Christian Solberg},
  title     = {Structure and dynamics of amorphous carbonates related to biomineralization},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-421691},
  school      = {Universit{\"a}t Potsdam},
  pages     = {138},
  year      = {2018},
  abstract  = {Amorphous calcium carbonate(ACC) is a wide spread biological material found in many organisms, such as sea Urchins and mollusks, where it serves as either a precursor phase for the crystalline biominerals or is stabilized and used in the amorphous state. As ACC readily crystallizes, stabilizers such as anions, cations or macromolecules are often present to avoid or delay unwanted crystallization. Furthermore, additives often control the properties of the materials to suit the specific function needed for the organism. E.g. cystoliths in leaves that scatter light to optimize energy uptake from the sun or calcite/aragonite crystals used in protective shells in mussels and gastropods. Lifetime of the amorphous phase is controlled by the kinetic stability against crystallization. This has often been linked to water which plays a role in the mobility of ions and hence the probability of forming crystalline nuclei to initiate crystallization. However, it is unclear how the water molecules are incorporated within the amorphous phase, either as liquid confined in pores, as structural water binding to the ions or as a mixture of both. It is also unclear how this is perturbed when additives are added, especially Mg2+, one the most common additives found in biogenic samples. Mg2+ are expected to have a strong influence on the water incorporated into ACC, given the high energy barrier to dehydration of magnesium ions compared to calcium ions in solution. During the last 10-15 years, there has been a large effort to understand the local environment of the ions/molecules and how this affects the properties of the amorphous phase. But only a few aspects of the structure have so far been well-described in literature. The reason for this is partly caused by the low stability of ACC if exposed to air, where it tends to crystallize within minutes and by the limited quantities of ACC produced in traditional synthesis routes. A further obstacle has been the difficulty in modeling the local structure based on experimental data. To solve the problem of stability and sample size, a few studies have used stabilizers such as Mg2+ or OH- and severely dehydrated samples so as to stabilize the amorphous state, allowing for combined neutron and x-ray analysis to be performed. However, so far, a clear description of the local environments of water present in the structure has not been reported. In this study we show that ACC can be synthesized without any stabilizing additives in quantities necessary for neutron measurements and that accurate models can be derived with the help of empirical-potential structural refinement. These analyses have shown that there is a wide range of local environments for all of the components in the system suggesting that the amorphous phase is highly inhomogeneous, without any phase separation between ions and water. We also showed that the water in ACC is mainly structural and that there is no confined or liquid-like water present in the system. Analysis of amorphous magnesium carbonate also showed that there is a large difference in the local structure of the two cations and that Mg2+ surprisingly interacts with significantly less water molecules then Ca2+ despite the higher dehydration energy. All in all, this shows that the role of water molecules as a structural component of ACC, with a strong binding to cat- and anions probably retard or prevents the crystallization of the amorphous phase.},
  language  = {en}
}
@phdthesis{Walther2018,
  author    = {Walther, Sebastian},
  title     = {Funktionalisierung von {\"O}ls{\"a}uremethylester und Alkydharzen f{\"u}r die photoinduzierte radikalische Polymerisation im UV Bereich},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-421467},
  school      = {Universit{\"a}t Potsdam},
  pages     = {136},
  year      = {2018},
  abstract  = {Die vorliegende Arbeit behandelt die Synthese und Charakterisierung von funktionalisierten Alkydharzen und die photoinduzierte Polymerisation dieser unter Einsatz einer Quecksilberdampflampe oder einer UV LED mit unterschiedlicher Lichtintensit{\"a}t. Der Fokus dieser Arbeit bestand in der gezielten Substitution der internalen Doppelbindungen der Fetts{\"a}ureester durch reaktivere Gruppen, wie Acrylate oder Methacrylate, welche f{\"u}r Alkydharze in dieser Form so in der Literatur nicht beschrieben sind. Untersuchungen des Polymerisationsverhaltens dieser funktionalisierten Harze wurden mit der Photo DSC durchgef{\"u}hrt, wobei Bis - (4 - methoxybenzoyl) diethylgermanium als Photoinitiator diente. Die Ergebnisse haben gezeigt, dass die Harze radikalisch polymerisiert werden k{\"o}nnen und eine geringere Abh{\"a}ngigkeit von der Umgebungsatmosph{\"a}re (Luftsauerstoff bzw. Stickstoff) vorliegt. Dies ist so in der Literatur f{\"u}r funktionalisierte Alkydharze nicht bekannt. Abmischungen von unterschiedlichen Monomeren und funktionalisierten Harzen bewirkten eine Steigerung der Viskosit{\"a}t sowie eine Verringerung der Sauerstoffinhibierung im Zuge der photoinduzierten Polymerisation unter Luftsauerstoff f{\"u}r die Quecksilberdampflampe und der UV LED. Zur Untersuchung der sauerstoffinhibierenden Wirkung der Harze sind Synthesen unterschiedlicher, funktionalisierter {\"O}ls{\"a}uremethylester als Modellsubstanzen durchgef{\"u}hrt worden. Ein verbessertes Polymerisationsverhalten und eine geringe Abh{\"a}ngigkeit von der Umgebungsatmosph{\"a}re konnte f{\"u}r die Modelle nachgewiesen werden. Zur Aufkl{\"a}rung des verbesserten Polymerisationsverhaltens sind gezielt Substituenten (Imidazol, Brom, Alkohol, Acetat) in den funktionalisierten {\"O}ls{\"a}uremethylester eingebaut worden, um den Einfluss dieser aufzuzeigen. Im Rahmen dieser Synthesen sind neuartige Strukturen synthetisiert worden, welche so in der Literatur nicht beschrieben sind. Die Gegen{\"u}berstellung der Polymerisationszeit, der Umsatz der (Meth-)Acrylatgruppen sowie die Zeit zum Erreichen der maximalen Polymerisationsgeschwindigkeit unter Verwendung von unterschiedlichen UV Lichtquellen hat einen Einfluss der Substituenten auf das Polymerisationsverhalten gezeigt.},
  language  = {de}
}
@phdthesis{Karras2018,
  author    = {Karras, Manfred},
  title     = {Synthesis of enantiomerically pure helical aromatics such as NHC ligands and their use in asymmetric catalysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-421497},
  school      = {Universit{\"a}t Potsdam},
  pages     = {121},
  year      = {2018},
  abstract  = {Diese Arbeit besch{\"a}ftigt sich mit der enantiomerenreinen Synthese helikaler, aromatischer Verbindungen. Verschiedene Verbindungen dieses Typs wurden erfolgreich hergestellt und charakterisiert. Desweiteren wurden einige der neuen Verbindungen in {\"U}bergangsmetallkomplexe eingebaut und diese dann als Katalysatoren f{\"u}r Metathese und Kreuzkupplungen getestet. Einer der getesteten Katalysatoren zeigte vielversprechende Ergebnisse in der asymmetrischen Olefinmetathese. Die Struktur des neuen Katalysators wurde untersucht. Anhand der Struktur des neuen Katalysators wurden R{\"u}ckschl{\"u}sse auf einen m{\"o}glichen Mechanismus gezogen.},
  language  = {en}
}
@phdthesis{VillatoroLeal2018,
  author    = {Villatoro Leal, Jos{\´e} Andr{\´e}s},
  title     = {A combined approach for the analysis of biomolecules using IR-MALDI ion mobility spectrometry and molecular dynamics simulations of peptide ions in the gas phase},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-419723},
  school      = {Universit{\"a}t Potsdam},
  pages     = {133},
  year      = {2018},
  abstract  = {The aim of this doctoral thesis was to establish a technique for the analysis of biomolecules with infrared matrix-assisted laser dispersion (IR-MALDI) ion mobility (IM) spectrometry. The main components of the work were the characterization of the IR-MALDI process, the development and characterization of different ion mobility spectrometers, the use of IR-MALDI-IM spectrometry as a robust, standalone spectrometer and the development of a collision cross-section estimation approach for peptides based on molecular dynamics and thermodynamic reweighting. First, the IR-MALDI source was studied with atmospheric pressure ion mobility spectrometry and shadowgraphy. It consisted of a metal capillary, at the tip of which a self-renewing droplet of analyte solution was met by an IR laser beam. A relationship between peak shape, ion desolvation, diffusion and extraction pulse delay time (pulse delay) was established. First order desolvation kinetics were observed and related to peak broadening by diffusion, both influenced by the pulse delay. The transport mechanisms in IR-MALDI were then studied by relating different laser impact positions on the droplet surface to the corresponding ion mobility spectra. Two different transport mechanisms were determined: phase explosion due to the laser pulse and electrical transport due to delayed ion extraction. The velocity of the ions stemming from the phase explosion was then measured by ion mobility and shadowgraphy at different time scales and distances from the source capillary, showing an initially very high but rapidly decaying velocity. Finally, the anatomy of the dispersion plume was observed in detail with shadowgraphy and general conclusions over the process were drawn. Understanding the IR-MALDI process enabled the optimization of the different IM spectrometers at atmospheric and reduced pressure (AP and RP, respectively). At reduced pressure, both an AP and an RP IR-MALDI source were used. The influence of the pulsed ion extraction parameters (pulse delay, width and amplitude) on peak shape, resolution and area was systematically studied in both AP and RP IM spectrometers and discussed in the context of the IR-MALDI process. Under RP conditions, the influence of the closing field and of the pressure was also examined for both AP and RP sources. For the AP ionization RP IM spectrometer, the influence of the inlet field (IF) in the source region was also examined. All of these studies led to the determination of the optimal analytical parameters as well as to a better understanding of the initial ion cloud anatomy. The analytical performance of the spectrometer was then studied. Limits of detection (LOD) and linear ranges were determined under static and pulsed ion injection conditions and interpreted in the context of the IR-MALDI mechanism. Applications in the separation of simple mixtures were also illustrated, demonstrating good isomer separation capabilities and the advantages of singly charged peaks. The possibility to couple high performance liquid chromatography (HPLC) to IR-MALDI-IM spectrometry was also demonstrated. Finally, the reduced pressure spectrometer was used to study the effect of high reduced field strength on the mobility of polyatomic ions in polyatomic gases. The last focus point was on the study of peptide ions. A dataset obtained with electrospray IM spectrometry was characterized and used for the calibration of a collision cross-section (CCS) determination method based on molecular dynamics (MD) simulations at high temperature. Instead of producing candidate structures which are evaluated one by one, this semi-automated method uses the simulation as a whole to determine a single average collision cross-section value by reweighting the CCS of a few representative structures. The method was compared to the intrinsic size parameter (ISP) method and to experimental results. Additional MD data obtained from the simulations was also used to further analyze the peptides and understand the experimental results, an advantage with regard to the ISP method. Finally, the CCS of peptide ions analyzed by IR-MALDI were also evaluated with both ISP and MD methods and the results compared to experiment, resulting in a first validation of the MD method. Thus, this thesis brings together the soft ionization technique that is IR-MALDI, which produces mostly singly charged peaks, with ion mobility spectrometry, which can distinguish between isomers, and a collision cross-section determination method which also provides structural information on the analyte at hand.},
  language  = {en}
}
@phdthesis{Dai2018,
  author    = {Dai, Xiaolin},
  title     = {Synthesis of artificial building blocks for sortase-mediated ligation and their enzymatic linkage},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-420060},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIV, 125},
  year      = {2018},
  abstract  = {Das Enzym Sortase A katalysiert die Bildung einer Peptidbindung zwischen der Erkennungssequenz LPXTG und einem Oligoglycin. W{\"a}hrend vielf{\"a}ltige Ligationen zwischen Proteinen und verschiedenen Biomolek{\"u}len, Proteinen und kleinen synthetischen Molek{\"u}len, sowie Proteinen und Oberfl{\"a}chen durchgef{\"u}hrt wurden, besteht das Ziel dieser Arbeit darin, die Sortase-katalysierte Verlinkung von synthetischen Bausteinen zu untersuchen. Dies k{\"o}nnte den Weg bereiten f{\"u}r die Anwendung von Sortase A f{\"u}r chemische Aufgabenstellungen und eventuell sogar in den Materialwissenschaften. F{\"u}r diese grunds{\"a}tzliche Untersuchung wurden die verwendeten Bausteine zun{\"a}chst so einfach wie m{\"o}glich gehalten und leicht zug{\"a}ngliche SiO2 Nanopartikel und kommerziell erh{\"a}ltliche Polymerbl{\"o}cke ausgew{\"a}hlt. Die Bausteine wurden als erstes mit den Peptidsequenzen f{\"u}r Sortase-vermittelte Ligationen funktionalisiert. SiO2 Nanopartikel wurden mit Durchmessern von 60 und 200 nm hergestellt und mit C=C Doppelbindungen oberfl{\"a}chenmodifiziert. Dann wurden Peptide mit einem terminalen Cystein kovalent durch eine Thiol-en Reaktion angebunden. An die 60 nm NP wurden Peptide mit einem Pentaglycin und an die 200 nm Partikel Peptide mit LPETG Sequenz gebunden. Auf die gleiche Art und Weise wurden Peptide mit terminalem Cystein an die Polymere Polyethylenglykol (PEG) und Poly(N Isopropylacrylamid) (PNIPAM), die beide {\"u}ber C=C Endgruppen verf{\"u}gen, gebunden und G5-PEG und PNIPAM-LPETG Konjugate erhalten. Mit den vier Bausteinen wurden nun durch Sortase-vermittelte Ligation NP-Polymer Hybride, NP-NP und Polymer-Polymer Strukturen hergestellt und die Produkte u. a. durch Transmissionselektronen-mikroskopie, MALDI-ToF Massenspektrometrie sowie Dynamische Lichtstreuung charakterisiert. Die Verlinkung dieser synthetischen Bausteine konnte eindeutig gezeigt werden. Das Verwenden von kommerziell erh{\"a}ltlichen Polymeren hat jedoch zu einem Gemisch der Polymer-Peptid Konjugate mit unmodifiziertem Polymer gef{\"u}hrt, welches nicht gereinigt werden konnte. Deswegen wurden anschließend Synthesestrategien f{\"u}r reine Peptid-Polymer und Polymer-Peptid Konjugate als Bausteine f{\"u}r Sortase-vermittelte Ligationen entwickelt. Diese basieren auf der RAFT Polymerisation mit CTAs, die entweder an N- oder C-Terminus eines Peptids gebunden sind. GG-PNIPAM wurde durch das Anbinden eines geeigneten RAFT CTAs an Fmoc-GG in einer Veresterungsreaktion, Polymerisation von NIPAM und Abspalten der Fmoc Schutzgruppe synthetisiert. Weiterhin wurden mehrere Peptide durch Festphasen-Peptidsynthese erhalten. Die Anbindung eines RAFT CTAs (oder eines Polymerisationsinitiators) an den N-Terminus eines Peptids kann automatisiert als letzter Schritt in einem Peptid-Synthetisierer erfolgen. Die Synthese eines solchen Konjugats konnte in dem Zeithorizont dieser Arbeit noch nicht erreicht werden. Jedoch existieren mehrere vielversprechende Strategien, um diesen Ansatz mit verschiedenen Kopplungsreagenzien zur Anbindung des CTAs fortzusetzen. Solche Polymer Bausteine k{\"o}nnen in Zukunft f{\"u}r die Synthese von Protein-Polymer Konjugaten durch Sortase-Katalyse verwendet werden. Außerdem kann der Ansatz auch f{\"u}r die Synthese von Block-Copolymeren aus Polymerbl{\"o}cken mit Peptidmotiven an beiden Enden ausgebaut werden. Auch wenn bei der grunds{\"a}tzlichen Untersuchung im Rahmen dieser Arbeit Hybridstrukturen hergestellt wurden, die auch durch traditionelle chemische Synthesen erhalten werden k{\"o}nnten, wird ein Bausatz solcher Bausteine in Zukunft die Synthese neuer Materialien erm{\"o}glichen und kann auch den Weg f{\"u}r die Anwendung von Enzymen in den Materialwissenschaften ebnen. In Erg{\"a}nzung zu Nanopartikeln und Block-Copolymeren k{\"o}nnen dann auch Hybridmaterialien unter Einbezug von Protein-basierten Bausteinen hergestellt werden. Daher k{\"o}nnten Sortase Enzyme zu einem Werkzeug werden, welches etablierte chemische Verlinkungstechniken erg{\"a}nzt und mit den hoch spezifischen Peptidmotiven {\"u}ber funktionale Einheiten verf{\"u}gt, die orthogonal zu allen chemischen Gruppen sind.},
  language  = {en}
}
@phdthesis{Roder2018,
  author    = {Roder, Phillip},
  title     = {Kombination von Fluoreszenzmikroskopie und Rasterkraftmikroskopie zur Aufkl{\"a}rung physiologischer Prozesse in lebenden Zellen},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-419806},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvi, 113},
  year      = {2018},
  abstract  = {Innerhalb dieser Doktorarbeit wurde eine neuartige Mikromanipulationstechnik f{\"u}r die lokale Fl{\"u}ssigkeitsabgabe am komplexen Dr{\"u}sengewebe der Schabe P. americana charakterisiert und f{\"u}r die damit verbundene gezielte Manipulation von einzelnen Zellen in einem Zellkomplex (Gewebe) angewandt. Bei dieser Mikromanipulationstechnik handelt es sich um die seit 2009 bekannte nanofluidische Rasterkraftmikroskopie (FluidFM = fluidic force microscopy). Dabei werden sehr kleine mikrokan{\"a}lige Rasterkraftspitzen bzw. Mikro-/Nanopipetten mit einer {\"O}ffnung zwischen 300 nm und 2 µm verwendet, mit denen es m{\"o}glich ist, sehr kleine Volumina im Pikoliter- bis Femtoliter-Bereich (10-12 L - 10-15 L) gezielt und ortsgenau abzugeben. Das Ziel dieser Arbeit war die Analyse zellul{\"a}rer Prozesse, wie z. B. Zell-Zell-Kommunikation oder Signalweiterleitung, zwischen benachbarten Zellen unter Zuhilfenahme der Fluoreszenzmikroskopie. Mit dieser Methode k{\"o}nnen die Zellen und ihre Bestandteile mittels vorheriger Farbstoffbeladung unter einem Mikroskop mit hohem Kontrast optisch dargestellt werden. Mit Hilfe der Fluoreszenzmikroskopie sollten schlussendlich die zellul{\"a}ren Reaktionen innerhalb des Gewebes nach der lokalen Manipulation visualisiert werden. Zun{\"a}chst wurde die Anwendung des Systems an Luft und w{\"a}ssriger Umgebung beschrieben. In diesem Zusammenhang wurde eine Reinigungs- und Beladungsmethode entwickelt, mit der es m{\"o}glich war, die kostspieligen Mikro-/Nanopipetten zu reinigen und anschließend mehrmals wiederzuverwenden. Hierzu wurde eine alternative Methode getestet, mit der das Diffusionsverhalten von Farbstoffmolek{\"u}len in unterschiedlichen Medien untersucht werden kann. Des Weiteren wurden die Systemparameter optimiert, welche n{\"o}tig sind, um zwischen der Probenoberfl{\"a}che und der Pipette einen guten Pipetten{\"o}ffnungs-abschluss zu erhalten. Dieser Abschluss ist essentiell, damit die abgegebene Fl{\"u}ssigkeit ausschließlich in der Abgaberegion mit der Probe wechselwirkt und die darauffolgenden Reaktionen nur innerhalb des Gewebes erfolgen, da ansonsten die Zell-Zell-Signalweiterleitung zwischen den Zellen nicht eindeutig nachvollzogen werden kann. Diese interzellul{\"a}re Kommunikation wurde anhand zweier sekund{\"a}rer Botenstoffe (Ca2+ und NO) untersucht. Hierbei war es m{\"o}glich einzelne lokale Reaktionen zu detektieren, welche sich {\"u}ber weitere Zellen ausbreiteten. Schlussendlich wurde die Fertigung einer speziellen Injektionspipette beschrieben, welche an zwei biologischen Systemen getestet wurde.},
  language  = {de}
}
@phdthesis{Abouserie2018,
  author    = {Abouserie, Ahed},
  title     = {Ionic liquid precursors for multicomponent inorganic nanomaterials},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418950},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xx, 193},
  year      = {2018},
  abstract  = {Health effects, attributed to the environmental pollution resulted from using solvents such as benzene, are relatively unexplored among petroleum workers, personal use, and laboratory researchers. Solvents can cause various health problems, such as neurotoxicity, immunotoxicity, and carcinogenicity. As such it can be absorbed via epidermal or respiratory into the human body resulting in interacting with molecules that are responsible for biochemical and physiological processes of the brain. Owing to the ever-growing demand for finding a solution, an Ionic liquid can use as an alternative solvent. Ionic liquids are salts in a liquid state at low temperature (below 100 C), or even at room temperature. Ionic liquids impart a unique architectural platform, which has been interesting because of their unusual properties that can be tuned by simple ways such as mixing two ionic liquids. Ionic liquids not only used as reaction solvents but they became a key developing for novel applications based on their thermal stability, electric conductivity with very low vapor pressure in contrast to the conventional solvents. In this study, ionic liquids were used as a solvent and reactant at the same time for the novel nanomaterials synthesis for different applications including solar cells, gas sensors, and water splitting. The field of ionic liquids continues to grow, and become one of the most important branches of science. It appears to be at a point where research and industry can work together in a new way of thinking for green chemistry and sustainable production.},
  language  = {en}
}
@phdthesis{Behrendt2018,
  author    = {Behrendt, Felix Nicolas},
  title     = {New bio-based polymers},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418316},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vii, 153},
  year      = {2018},
  abstract  = {Redox-responsive polymers, such as poly(disulfide)s, are a versatile class of polymers with potential applications including gene- and drug-carrier systems. Their degradability under reductive conditions allows for a controlled response to the different redox states that are present throughout the body. Poly(disulfide)s are typically synthesized by step growth polymerizations. Step growth polymerizations, however, may suffer from low conversions and therefore low molar masses, limiting potential applications. The purpose of this thesis was therefore to find and investigate new synthetic routes towards the synthesis of amino acid-based poly(disulfide)s. The different routes in this thesis include entropy-driven ring opening polymerizations of novel macrocyclic monomers, derived from cystine derivatives. These monomers were obtained with overall yields of up to 77\% and were analyzed by mass spectrometry as well as by 1D and 2D NMR spectroscopy. The kinetics of the entropy-driven ring-opening metathesis polymerization (ED-ROMP) were thoroughly investigated in dependence of temperature, monomer concentration, and catalyst concentration. The polymerization was optimized to yield poly(disulfide)s with weight average molar masses of up to 80 kDa and conversions of ~80\%, at the thermodynamic equilibrium. Additionally, an alternative metal free polymerization, namely the entropy-driven ring-opening disulfide metathesis polymerization (ED-RODiMP) was established for the polymerization of the macrocyclic monomers. The effect of different solvents, concentrations and catalyst loadings on the polymerization process and its kinetics were studied. Polymers with very high weight average molar masses of up to 177 kDa were obtained. Moreover, various post-polymerization reactions were successfully performed. This work provides the first example of the homopolymerization of endo-cyclic disulfides by ED-ROMP and the first substantial study into the kinetics of the ED-RODiMP process.},
  language  = {en}
}
@phdthesis{Xiong2018,
  author    = {Xiong, Tao},
  title     = {Vibrationally resolved absorption, emission, resonance Raman and photoelectron spectra of selected organic molecules, associated radicals and cations},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418105},
  school      = {Universit{\"a}t Potsdam},
  pages     = {iv, 100},
  year      = {2018},
  abstract  = {Time-dependent correlation function based methods to study optical spectroscopy involving electronic transitions can be traced back to the work of Heller and coworkers. This intuitive methodology can be expected to be computationally efficient and is applied in the current work to study the vibronic absorption, emission, and resonance Raman spectra of selected organic molecules. Besides, the "non-standard" application of this approach to photoionization processes is also explored. The application section consists of four chapters as described below. In Chapter 4, the molar absorptivities and vibronic absorption/emission spectra of perylene and several of its N-substituted derivatives are investigated. By systematically varying the number and position of N atoms, it is shown that the presence of nitrogen heteroatoms has a negligible effect on the molecular structure and geometric distortions upon electronic transitions, while spectral properties are more sensitive: In particular the number of N atoms is important while their position is less decisive. Thus, N-substitution can be used to fine-tune the optical properties of perylene-based molecules. In Chapter 5, the same methods are applied to study the vibronic absorption/emission and resonance Raman spectra of a newly synthesized donor-acceptor type molecule. The simulated absorption/emission spectra agree fairly well with experimental data, with discrepancies being attributed to solvent effects. Possible modes which may dominate the fine-structure in the vibronic spectra are proposed by analyzing the correlation function with the aid of Raman and resonance Raman spectra. In the next two chapters, besides the above types of spectra, the methods are extended to study photoelectron spectra of several small diamondoid-related systems (molecules, radicals, and cations). Comparison of the photoelectron spectra with available experimental data suggests that the correlation function based approach can describe ionization processes reasonably well. Some of these systems, cationic species in particular, exhibit somewhat peculiar optical behavior, which presents them as possible candidates for functional devices. Correlation function based methods in a more general sense can be very versatile. In fact, besides the above radiative processes, formulas for non-radiative processes such as internal conversion have been derived in literature. Further implementation of the available methods is among our next goals.},
  language  = {en}
}