@misc{Metzler2017, author = {Metzler, Ralf}, title = {Anomalous Diffusion in Membranes and the Cytoplasm of Biological Cells}, series = {Biophysical journal}, volume = {112}, journal = {Biophysical journal}, number = {3}, publisher = {Cell Press}, address = {Cambridge}, issn = {0006-3495}, doi = {10.1016/j.bpj.2016.11.2577}, pages = {476A -- 476A}, year = {2017}, language = {en} } @article{GianelliMarzocchiBorghi2017, author = {Gianelli, Claudia and Marzocchi, Michele and Borghi, Anna M.}, title = {Grasping the Agent's Perspective}, series = {Frontiers in psychology}, volume = {8}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2017.00042}, pages = {13}, year = {2017}, language = {en} } @misc{Metzler2017, author = {Metzler, Ralf}, title = {Gaussianity Fair}, series = {Biophysical journal}, volume = {112}, journal = {Biophysical journal}, number = {3}, publisher = {Cell Press}, address = {Cambridge}, issn = {0006-3495}, doi = {10.1016/j.bpj.2016.12.019}, pages = {413 -- 415}, year = {2017}, language = {en} } @article{ZimmermannRaschkeEppetal.2017, author = {Zimmermann, Heike Hildegard and Raschke, Elena and Epp, Laura Saskia and Stoof-Leichsenring, Kathleen Rosemarie and Schwamborn, Georg and Schirrmeister, Lutz and Overduin, Pier Paul and Herzschuh, Ulrike}, title = {Sedimentary ancient DNA and pollen reveal the composition of plant organic matter in Late Quaternary permafrost sediments of the Buor Khaya Peninsula (north-eastern Siberia)}, series = {Biogeosciences}, volume = {14}, journal = {Biogeosciences}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-14-575-2017}, pages = {575 -- 596}, year = {2017}, abstract = {Organic matter deposited in ancient, ice-rich permafrost sediments is vulnerable to climate change and may contribute to the future release of greenhouse gases; it is thus important to get a better characterization of the plant organic matter within such sediments. From a Late Quaternary permafrost sediment core from the Buor Khaya Peninsula, we analysed plant-derived sedimentary ancient DNA (sedaDNA) to identify the taxonomic composition of plant organic matter, and undertook palynological analysis to assess the environmental conditions during deposition. Using sedaDNA, we identified 154 taxa and from pollen and non-pollen palynomorphs we identified 83 taxa. In the deposits dated between 54 and 51 kyr BP, sedaDNA records a diverse low-centred polygon plant community including recurring aquatic pond vegetation while from the pollen record we infer terrestrial open-land vegetation with relatively dry environmental conditions at a regional scale. A fluctuating dominance of either terrestrial or swamp and aquatic taxa in both proxies allowed the local hydrological development of the polygon to be traced. In deposits dated between 11.4 and 9.7 kyr BP (13.4-11.1 cal kyr BP), sedaDNA shows a taxonomic turnover to moist shrub tundra and a lower taxonomic richness compared to the older samples. Pollen also records a shrub tundra community, mostly seen as changes in relative proportions of the most dominant taxa, while a decrease in taxonomic richness was less pronounced compared to sedaDNA. Our results show the advantages of using sedaDNA in combination with palynological analyses when macrofossils are rarely preserved. The high resolution of the sedaDNA record provides a detailed picture of the taxonomic composition of plant-derived organic matter throughout the core, and palynological analyses prove valuable by allowing for inferences of regional environmental conditions.}, language = {en} } @article{SchweighoeferMorenoBoboneetal.2017, author = {Schweigh{\"o}fer, F. and Moreno, J. and Bobone, Sara and Chiantia, Salvatore and Herrmann, A. and Hecht, S. and Wachtveitl, Josef}, title = {Connectivity pattern modifies excited state relaxation dynamics of fluorophore-photoswitch molecular dyads}, series = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, volume = {19}, journal = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, doi = {10.1039/c6cp07112k}, pages = {4010 -- 4018}, year = {2017}, abstract = {In order to modulate the emission of BODIPY fluorophores, they were connected to a diarylethene (DAE) photoswitch via phenylene-ethynylene linkers of different lengths and orientations. The latter allowed for modulation of the electronic coupling in the prepared four BODIPY-DAE dyads, which were compared also to appropriate BODIPY and DAE model compounds by steady state as well as time-resolved spectroscopies. In their open isomers, all dyads show comparable luminescence behavior indicative of an unperturbed BODIPY fluorophore. In strong contrast, in the closed isomers the BODIPY emission is efficiently quenched but the deactivation mechanism depends on the nature of the linker. The most promising dyad was rendered water-soluble by means of micellar encapsulation and aqueous suspensions were investigated by fluorescence spectroscopy and microscopy. Our results (i) illustrate that the electronic communication between the BODIPY and DAE units can indeed be fine-tuned by the nature of the linker to achieve fluorescence modulation while maintaining photoswitchability and (ii) highlight potential applications to image and control biological processes with high spatio-temporal resolution.}, language = {en} } @misc{FelserPhillipsWagers2017, author = {Felser, Claudia and Phillips, Colin and Wagers, Matthew}, title = {Editorial: Encoding and Navigating Linguistic Representations in Memory}, series = {Frontiers in psychology}, volume = {8}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2017.00164}, pages = {6}, year = {2017}, language = {en} } @article{DallmeyerClaussenNietal.2017, author = {Dallmeyer, Anne and Claussen, Martin and Ni, Jian and Cao, Xianyong and Wang, Yongbo and Fischer, Nils and Pfeiffer, Madlene and Jin, Liya and Khon, Vyacheslav and Wagner, Sebastian and Haberkorn, Kerstin and Herzschuh, Ulrike}, title = {Biome changes in Asia since the mid-Holocene}, series = {Climate of the past : an interactive open access journal of the European Geosciences Union}, volume = {13}, journal = {Climate of the past : an interactive open access journal of the European Geosciences Union}, number = {2}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1814-9324}, doi = {10.5194/cp-13-107-2017}, pages = {107 -- 134}, year = {2017}, abstract = {The large variety of atmospheric circulation systems affecting the eastern Asian climate is reflected by the complex Asian vegetation distribution. Particularly in the transition zones of these circulation systems, vegetation is supposed to be very sensitive to climate change. Since proxy records are scarce, hitherto a mechanistic understanding of the past spatio-temporal climate-vegetation relationship is lacking. To assess the Holocene vegetation change and to obtain an ensemble of potential mid-Holocene biome distributions for eastern Asia, we forced the diagnostic biome model BIOME4 with climate anomalies of different transient Holocene climate simulations performed in coupled atmosphere-ocean(-vegetation) models. The simulated biome changes are compared with pollen-based biome records for different key regions. In all simulations, substantial biome shifts during the last 6000 years are confined to the high northern latitudes and the monsoon-westerly wind transition zone, but the temporal evolution and amplitude of change strongly depend on the climate forcing. Large parts of the southern tundra are replaced by taiga during the mid-Holocene due to a warmer growing season and the boreal treeline in northern Asia is shifted northward by approx. 4 degrees in the ensemble mean, ranging from 1.5 to 6 degrees in the individual simulations, respectively. This simulated treeline shift is in agreement with pollen-based reconstructions from northern Siberia. The desert fraction in the transition zone is reduced by 21\% during the mid-Holocene compared to pre-industrial due to enhanced precipitation. The desert-steppe margin is shifted westward by 5 degrees (1-9 degrees in the individual simulations). The forest biomes are expanded north-westward by 2 degrees, ranging from 0 to 4 degrees in the single simulations. These results corroborate pollen-based reconstructions indicating an extended forest area in north-central China during the mid-Holocene. According to the model, the forest-to-non-forest and steppe-to-desert changes in the climate transition zones are spatially not uniform and not linear since the mid-Holocene.}, language = {en} } @article{MolnosMamdouhPetrietal.2017, author = {Molnos, Sonja and Mamdouh, Tarek and Petri, Stefan and Nocke, Thomas and Weinkauf, Tino and Coumou, Dim}, title = {A network-based detection scheme for the jet stream core}, series = {Earth system dynamics}, volume = {8}, journal = {Earth system dynamics}, number = {1}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {2190-4979}, doi = {10.5194/esd-8-75-2017}, pages = {75 -- 89}, year = {2017}, abstract = {The polar and subtropical jet streams are strong upper-level winds with a crucial influence on weather throughout the Northern Hemisphere midlatitudes. In particular, the polar jet is located between cold arctic air to the north and warmer subtropical air to the south. Strongly meandering states therefore often lead to extreme surface weather. The parameter values of the detection scheme are optimized using simulated annealing and a skill function that accounts for the zonal-mean jet stream position (Rikus, 2015). After the successful optimization process, we apply our scheme to reanalysis data covering 1979-2015 and calculate seasonal-mean probabilistic maps and trends in wind strength and position of jet streams. We present longitudinally defined probability distributions of the positions for both jets for all on the Northern Hemisphere seasons. This shows that winter is characterized by two well-separated jets over Europe and Asia (ca. 20 degrees W to 140 degrees E). In contrast, summer normally has a single merged jet over the western hemisphere but can have both merged and separated jet states in the eastern hemisphere.}, language = {en} } @article{ArchambaultArcherBenbowetal.2017, author = {Archambault, S. and Archer, A. and Benbow, Wystan and Bird, Ralph and Bourbeau, E. and Buchovecky, M. and Buckley, J. H. and Bugaev, V. and Cerruti, M. and Connolly, M. P. and Cui, W. and Dwarkadas, Vikram V. and Errando, M. and Falcone, A. and Feng, Q. and Finley, J. P. and Fleischhack, H. and Fortson, L. and Furniss, A. and Griffin, S. and Huetten, M. and Hanna, D. and Holder, J. and Johnson, C. A. and Kaaret, P. and Kar, P. and Kelley-Hoskins, N. and Kertzman, M. and Kieda, D. and Krause, M. and Kumar, S. and Lang, M. J. and Maier, G. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nieto, D. and Ong, R. A. and Otte, A. N. and Park, Nahee and Pohl, Martin and Popkow, A. and Pueschel, Elisa and Quinn, J. and Ragan, K. and Reynolds, P. T. and Richards, G. T. and Roache, E. and Sadeh, I. and Santander, M. and Sembroski, G. H. and Shahinyan, K. and Slane, P. and Staszak, D. and Telezhinsky, Igor O. and Trepanier, S. and Tyler, J. and Wakely, S. P. and Weinstein, A. and Weisgarber, T. and Wilcox, P. and Wilhelm, Alina and Williams, D. A. and Zitzer, B.}, title = {Gamma-ray Observations of Tycho's Supernova Remnant with VERITAS and Fermi}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {836}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.3847/1538-4357/836/1/23}, pages = {8}, year = {2017}, language = {en} } @article{JudahDeWittHubertsDrassaletal.2017, author = {Judah, Gaby and De Witt Huberts, Jessie and Drassal, Allan and Aunger, Robert}, title = {The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts}, series = {PLoS one}, volume = {12}, journal = {PLoS one}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0171610}, pages = {16}, year = {2017}, abstract = {Introduction Methods A commercial Real Time Location System was adapted to meet these requirements and subsequently validated in three households by monitoring various bathroom behaviours. Results The results indicate that the system is robust, can monitor behaviours over the long-term in different households and can reliably distinguish between individuals. Precision rates were high and consistent. Recall rates were less consistent across households and behaviours, although recall rates improved considerably with practice at set-up of the system. The achieved precision and recall rates were comparable to the rates observed in more controlled environments using more valid methods of ground truthing. Conclusion These initial findings indicate that the system is a valuable, flexible and robust system for monitoring behaviour in its natural environment that would allow new research questions to be addressed.}, language = {en} } @article{GarakaniRichterBoeker2017, author = {Garakani, Tayebeh Mirzaei and Richter, Marina Juliane and B{\"o}ker, Alexander}, title = {Controlling the bio-inspired synthesis of silica}, series = {Journal of colloid and interface science}, volume = {488}, journal = {Journal of colloid and interface science}, publisher = {Elsevier}, address = {San Diego}, issn = {0021-9797}, doi = {10.1016/j.jcis.2016.10.069}, pages = {322 -- 334}, year = {2017}, abstract = {The influence of different parameters on the silicification procedure using lysozyme is reported. When polyethoxysiloxane (PEOS), an internally crosslinked silica reservoir, is used, regular structures with a narrow size distribution could be obtained only via introducing the silica precursor in two steps including initial dropping and subsequent addition of residual oil phase in one portion. We found that mixing sequence of mineralizing agents in the presence of a positively charged surfactant plays a key role in terms of silica precipitation when tetraethoxyorthosilicate (TEOS) is the oil phase. In contrast, well mineralized crumpled features with high specific surface area could be synthesized in the presence of PEOS as a silica precursor polymer, regardless of mixing sequence. Moreover, introducing sodium dodecyl sulfate (SDS) as a negatively charged surfactant resulted in regular silica sphere formation only in combination with hexylene glycol (MPD) as a specific co-solvent. Finally, it is demonstrated that by inclusion of different nanoparticles even more sophisticated hybrid materials can be generated.}, language = {en} } @article{GuoPaychaZhang2017, author = {Guo, Li and Paycha, Sylvie and Zhang, Bin}, title = {Algebraic Birkhoff factorization and the Euler-Maclaurin formula on cones}, series = {Duke mathematical journal}, volume = {166}, journal = {Duke mathematical journal}, number = {3}, publisher = {Duke Univ. Press}, address = {Durham}, issn = {0012-7094}, doi = {10.1215/00127094-3715303}, pages = {537 -- 571}, year = {2017}, abstract = {We equip the space of lattice cones with a coproduct which makes it a cograded, coaugmented, connnected coalgebra. The exponential generating sum and exponential generating integral on lattice cones can be viewed as linear maps on this space with values in the space of meromorphic germs with linear poles at zero. We investigate the subdivision properties-reminiscent of the inclusion-exclusion principle for the cardinal on finite sets-of such linear maps and show that these properties are compatible with the convolution quotient of maps on the coalgebra. Implementing the algebraic Birkhoff factorization procedure on the linear maps under consideration, we factorize the exponential generating sum as a convolution quotient of two maps, with each of the maps in the factorization satisfying a subdivision property. A direct computation shows that the polar decomposition of the exponential generating sum on a smooth lattice cone yields an Euler-Maclaurin formula. The compatibility with subdivisions of the convolution quotient arising in the algebraic Birkhoff factorization then yields the Euler-Maclaurin formula for any lattice cone. This provides a simple formula for the interpolating factor by means of a projection formula.}, language = {en} } @article{TaylorGoodaleRaabetal.2017, author = {Taylor, Vivien and Goodale, Britton and Raab, Andrea and Schwerdtle, Tanja and Reimer, Ken and Conklin, Sean and Karagas, Margaret R. and Francesconi, Kevin A.}, title = {Human exposure to organic arsenic species from seafood}, series = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, volume = {580}, journal = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0048-9697}, doi = {10.1016/j.scitotenv.2016.12.113}, pages = {266 -- 282}, year = {2017}, abstract = {Seafood, including finfish, shellfish, and seaweed, is the largest contributor to arsenic (As) exposure in many human populations. In contrast to the predominance of inorganic As in water and many terrestrial foods, As in marine-derived foods is present primarily in the form of organic compounds. To date, human exposure and toxicological assessments have focused on inorganic As, while organic As has generally been considered to be nontoxic. However, the high concentrations of organic As in seafood, as well as the often complex As speciation, can lead to complications in assessing As exposure from diet. In this report, we evaluate the presence and distribution of organic As species in seafood, and combined with consumption data, address the current capabilities and needs for determining human exposure to these compounds. The analytical approaches and shortcomings for assessing these compounds are reviewed, with a focus on the best practices for characterization and quantitation. Metabolic pathways and toxicology of two important classes of organic arsenicals, arsenolipids and arsenosugars, are examined, as well as individual variability in absorption of these compounds. Although determining health outcomes or assessing a need for regulatory policies for organic As exposure is premature, the extensive consumption of seafood globally, along with the preliminary toxicological profiles of these compounds and their confounding effect on assessing exposure to inorganic As, suggests further investigations and process-level studies on organic As are needed to fill the current gaps in knowledge.}, language = {en} } @article{ShpritsKellermanAseevetal.2017, author = {Shprits, Yuri and Kellerman, Adam C . and Aseev, Nikita and Drozdov, Alexander and Michaelis, Ingo}, title = {Multi-MeV electron loss in the heart of the radiation belts}, series = {Geophysical research letters}, volume = {44}, journal = {Geophysical research letters}, number = {3}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0094-8276}, doi = {10.1002/2016GL072258}, pages = {1204 -- 1209}, year = {2017}, abstract = {Significant progress has been made in recent years in understanding acceleration mechanisms in the Earth's radiation belts. In particular, a number of studies demonstrated the importance of the local acceleration by analyzing the radial profiles of phase space density (PSD) and observing building up peaks in PSD. In this study, we focus on understanding of the local loss using very similar tools. The profiles of PSD for various values of the first adiabatic invariants during the previously studied 17 January 2013 storm are presented and discussed. The profiles of PSD show clear deepening minimums consistent with the scattering by electromagnetic ion cyclotron waves. Long-term evolution shows that local minimums in PSD can persist for relatively long times. During considered interval of time the deepening minimums were observed around L* = 4 during 17 January 2013 storm and around L* = 3.5 during 1 March 2013 storm. This study shows a new method that can help identify the location, magnitude, and time of the local loss and will help quantify local loss in the future. This study also provides additional clear and definitive evidence that local loss plays a major role for the dynamics of the multi-MeV electrons.}, language = {en} } @article{LiuCherstvyMetzler2017, author = {Liu, Lin and Cherstvy, Andrey G. and Metzler, Ralf}, title = {Facilitated Diffusion of Transcription Factor Proteins with Anomalous Bulk Diffusion}, series = {The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces \& biophysical chemistry}, volume = {121}, journal = {The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces \& biophysical chemistry}, publisher = {American Chemical Society}, address = {Washington}, issn = {1520-6106}, doi = {10.1021/acs.jpcb.6b12413}, pages = {1284 -- 1289}, year = {2017}, abstract = {What are the physical laws of the diffusive search of proteins for their specific binding sites on DNA in the presence of the macromolecular crowding in cells? We performed extensive computer simulations to elucidate the protein target search on DNA. The novel feature is the viscoelastic non-Brownian protein bulk diffusion recently observed experimentally. We examine the influence of the protein-DNA binding affinity and the anomalous diffusion exponent on the target search time. In all cases an optimal search time is found. The relative contribution of intermittent three-dimensional bulk diffusion and one-dimensional sliding of proteins along the DNA is quantified. Our results are discussed in the light of recent single molecule tracking experiments, aiming at a better understanding of the influence of anomalous kinetics of proteins on the facilitated diffusion mechanism.}, language = {en} } @article{CannonCarvalhoJonesetal.2017, author = {Cannon, Forest and Carvalho, Leila M. V. and Jones, Charles and Norris, Jesse and Bookhagen, Bodo and Kiladis, George N.}, title = {Effects of topographic smoothing on the simulation of winter precipitation in High Mountain Asia}, series = {Journal of Geophysical Research: Atmospheres}, volume = {122}, journal = {Journal of Geophysical Research: Atmospheres}, number = {3}, publisher = {American Geophysical Union}, address = {Washington}, issn = {2169-897X}, doi = {10.1002/2016JD026038}, pages = {1456 -- 1474}, year = {2017}, abstract = {Numerous studies have projected future changes in High Mountain Asia water resources based on temperature and precipitation from global circulation models (GCMs) under future climate scenarios. Although the potential benefit of such studies is immense, coarse grid-scale GCMs are unable to resolve High Mountain Asia's complex topography and thus have a biased representation of regional weather and climate. This study investigates biases in the simulation of physical mechanisms that generate snowfall and contribute to snowpack in High Mountain Asia in coarse topography experiments using the Weather Research and Forecasting model. Regional snowpack is event driven, thus 33 extreme winter orographic precipitation events are simulated at fine atmospheric resolution with 6.67 km resolution topography and smoothed 1.85° × 1.25° GCM topography. As with many modified topography experiments performed in other regions, the distribution of precipitation is highly dependent on first-order orographic effects, which dominate regional meteorology. However, we demonstrate that topographic smoothing enhances circulation in simulated extratropical cyclones, with significant impacts on orographic precipitation. Despite precipitation reductions of 28\% over the highest ranges, due to reduced ascent on windward slopes, total precipitation over the study domain increased by an average of 9\% in smoothed topography experiments on account of intensified extratropical cyclone dynamics and cross-barrier moisture flux. These findings identify an important source of bias in coarse-resolution simulated precipitation in High Mountain Asia, with important implications for the application of GCMs toward projecting future hydroclimate in the region.}, language = {en} } @article{MuellerEngelKopinskietal.2017, author = {M{\"u}ller, Juliane and Engel, Tilman and Kopinski, Stephan and Mayer, Frank and M{\"u}ller, Steffen}, title = {Neuromuscular trunk activation patterns in back pain patients during one-handed lifting}, series = {World journal of orthopedics}, volume = {8}, journal = {World journal of orthopedics}, number = {2}, publisher = {Baishideng Publishing Group}, address = {Pleasanton}, issn = {2218-5836}, doi = {10.5312/wjo.v8.i2.142}, pages = {142 -- 148}, year = {2017}, abstract = {AIM To analyze neuromuscular activity patterns of the trunk in healthy controls (H) and back pain patients (BPP) during one-handed lifting of light to heavy loads. METHODS RESULTS Seven subjects (3m/4f; 32 +/- 7 years; 171 +/- 7 cm; 65 +/- 11 kg) were assigned to BPP (pain grade >= 2) and 36 (13m/23f; 28 +/- 8 years; 174 +/- 10 cm; 71 +/- 12 kg) to H (pain grade <= 1). H and BPP did not differ significantly in anthropometrics (P > 0.05). All subjects were able to lift the light and middle loads, but 57\% of BPP and 22\% of H were not able to lift the heavy load (all women) chi(2) analysis revealed statistically significant differences in task failure between H vs BPP (P = 0.03). EMG-RMS ranged from 33\% +/- 10\%/30\% +/- 9\% (DL, 1 kg) to 356\% +/- 148\%/283\% +/- 80\% (VR, 20 kg) in H/BPP with no statistical difference between groups regardless of load (P > 0.05). However, the EMG-RMS of the VR was greatest in all lifting tasks for both groups and increased with heavier loads. CONCLUSION Heavier loading leads to an increase (2-to 3-fold) in trunk muscle activity with comparable patterns. Heavy loading (20 kg) leads to task failure, especially in women with back pain.}, language = {en} } @article{SmirnovOsipovPikovskij2017, author = {Smirnov, Lev A. and Osipov, Grigory V. and Pikovskij, Arkadij}, title = {Chimera patterns in the Kuramoto-Battogtokh model}, series = {Journal of physics : A, Mathematical and theoretical}, volume = {50}, journal = {Journal of physics : A, Mathematical and theoretical}, number = {8}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1751-8113}, doi = {10.1088/1751-8121/aa55f1}, pages = {10}, year = {2017}, abstract = {Kuramoto and Battogtokh (2002 Nonlinear Phenom. Complex Syst. 5 380) discovered chimera states represented by stable coexisting synchrony and asynchrony domains in a lattice of coupled oscillators. After a reformulation in terms of a local order parameter, the problem can be reduced to partial differential equations. We find uniformly rotating, spatially periodic chimera patterns as solutions of a reversible ordinary differential equation, and demonstrate a plethora of such states. In the limit of neutral coupling they reduce to analytical solutions in the form of one-and two-point chimera patterns as well as localized chimera solitons. Patterns at weakly attracting coupling are characterized by virtue of a perturbative approach. Stability analysis reveals that only the simplest chimeras with one synchronous region are stable.}, language = {en} } @article{ReschkeMebsSigfridssonClaussetal.2017, author = {Reschke, Stefan and Mebs, Stefan and Sigfridsson-Clauss, Kajsa G. V. and Kositzki, Ramona and Leimk{\"u}hler, Silke and Haumann, Michael}, title = {Protonation and Sulfido versus Oxo Ligation Changes at the Molybdenum Cofactor in Xanthine Dehydrogenase (XDH) Variants Studied by X-ray Absorption Spectroscopy}, series = {Inorganic chemistry}, volume = {56}, journal = {Inorganic chemistry}, number = {4}, publisher = {American Chemical Society}, address = {Washington}, issn = {0020-1669}, doi = {10.1021/acs.inorgchem.6b02846}, pages = {2165 -- 2176}, year = {2017}, abstract = {Enzymes of the xanthine oxidase family are among the best characterized mononuclear molybdenum enzymes. Open questions about their mechanism of transfer of an oxygen atom to the substrate remain. The enzymes share a molybdenum cofactor (Moco) with the metal ion binding a molybdopterin (MPT) molecule via its dithiolene function and terminal sulfur and oxygen groups. For xanthine dehydrogenase (XDH) from the bacterium Rhodobacter capsulatus, we used X-ray absorption spectroscopy to determine the Mo site structure, its changes in a pH range of 5-10, and the influence of amino acids (Glu730 and Gln179) close to Moco in wild-type (WT), Q179A, and E730A variants, complemented by enzyme kinetics and quantum chemical studies. Oxidized WT and Q179A revealed a similar Mo (VI) ion with each one MPT, Mo=O, Mo-O-, and Mo=S ligand, and a weak Mo-O(E730) bond at alkaline pH. Protonation of an oxo to a hydroxo (OH) ligand (pK similar to 6.8) causes inhibition of XDH at acidic pH, whereas deprotonated xanthine (pK similar to 8.8) is an inhibitor at alkaline pH. A similar acidic pK for the WT and Q179A. variants, as well as the metrical parameters of the Mo site and density functional theory calculations, suggested protonation at the equatorial oxo group. The sulfido was replaced with an oxo ligand in the inactive E730A variant, further showing another oxo and one Mo OH ligand at Mo, which are independent of pH. Our findings suggest a reaction mechanism for XDH in which an initial oxo rather than a hydroxo group and the sulfido ligand are essential for xanthine oxidation.}, language = {en} } @article{AbeysekaraArchambaultArcheretal.2017, author = {Abeysekara, A. U. and Archambault, S. and Archer, A. and Benbow, Wystan and Bird, Ralph and Buchovecky, M. and Buckley, J. H. and Bugaev, V. and Byrum, K. and Cerruti, M. and Chen, X. and Ciupik, L. and Cui, W. and Dickinson, H. J. and Eisch, J. D. and Errando, M. and Falcone, A. and Feng, Q. and Finley, J. P. and Fleischhack, H. and Fortson, L. and Furniss, A. and Gillanders, G. H. and Griffin, S. and Grube, J. and Hutten, M. and Hakansson, N. and Hanna, D. and Holder, J. and Humensky, T. B. and Johnson, C. A. and Kaaret, P. and Kar, P. and Kertzman, M. and Kieda, D. and Krause, M. and Krennrich, F. and Kumar, S. and Lang, M. J. and Maier, G. and McArthur, S. and McCann, A. and Meagher, K. and Moriarty, P. and Mukherjee, R. and Nguyen, T. and Nieto, D. and Ong, R. A. and Otte, A. N. and Park, N. and Pelassa, V. and Pohl, Martin and Popkow, A. and Pueschel, Elisa and Quinn, J. and Ragan, K. and Reynolds, P. T. and Richards, G. T. and Roache, E. and Rulten, C. and Santander, M. and Sembroski, G. H. and Shahinyan, K. and Staszak, D. and Telezhinsky, Igor O. and Tucci, J. V. and Tyler, J. and Wakely, S. P. and Weiner, O. M. and Weinstein, A. and Wilhelm, Alina and Williams, D. A. and Fegan, S. and Giebels, B. and Horan, D. and Berdyugin, A. and Kuan, J. and Lindfors, E. and Nilsson, K. and Oksanen, A. and Prokoph, H. and Reinthal, R. and Takalo, L. and Zefi, F.}, title = {A Luminous and Isolated Gamma-Ray Flare from the Blazar B2 1215+30}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {836}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {VERITAS Collaboration;Fermi-LAT Collaboration}, issn = {0004-637X}, doi = {10.3847/1538-4357/836/2/205}, pages = {6}, year = {2017}, abstract = {B2 1215+30 is a BL-Lac-type blazar that was first detected at TeV energies by the MAGIC atmospheric Cherenkov telescopes and subsequently confirmed by the Very Energetic Radiation Imaging Telescope Array System (VERITAS) observatory with data collected between 2009 and 2012. In 2014 February 08, VERITAS detected a large-amplitude flare from B2. 1215+30 during routine monitoring observations of the blazar 1ES. 1218+304, located in the same field of view. The TeV flux reached 2.4 times the Crab Nebula flux with a variability timescale of <3.6 hr. Multiwavelength observations with Fermi-LAT, Swift, and the Tuorla Observatory revealed a correlated high GeV flux state and no significant optical counterpart to the flare, with a spectral energy distribution where the gamma-ray luminosity exceeds the synchrotron luminosity. When interpreted in the framework of a onezone leptonic model, the observed emission implies a high degree of beaming, with Doppler factor delta > 10, and an electron population with spectral index p < 2.3.}, language = {en} }