@phdthesis{vonRekowski1999, author = {von Rekowski, Matthias}, title = {2D-Akkretionsscheibenmodelle mit dynamoerregten Magnetfeldern}, address = {Potsdam}, pages = {ii, 87 S. : graph. Darst.}, year = {1999}, language = {de} } @phdthesis{Ehrig2017, author = {Ehrig, Sebastian}, title = {3D curvature and its role on tissue organization}, school = {Universit{\"a}t Potsdam}, pages = {132}, year = {2017}, abstract = {Shape change is a fundamental process occurring in biological tissues during embryonic development and regeneration of tissues and organs. This process is regulated by cells that are constrained within a complex environment of biochemical and physical cues. The spatial constraint due to geometry has a determining role on tissue mechanics and the spatial distribution of force patterns that, in turn, influences the organization of the tissue structure. An understanding of the underlying principles of tissue organization may have wide consequences for the understanding of healing processes and the development of organs and, as such, is of fundamental interest for the tissue engineering community. This thesis aims to further our understanding of how the collective behaviour of cells is influenced by the 3D geometry of the environment. Previous research studying the role of geometry on tissue growth has mainly focused either on flat surfaces or on substrates where at least one of the principal curvatures is zero. In the present work, tissue growth from MC3T3-E1 pre-osteoblasts was investigated on surfaces of controlled mean curvature. One key aspect of this thesis was the development of substrates of controlled mean curvature and their visualization in 3D. It was demonstrated that substrates of controlled mean curvature suitable for cell culture can be fabricated using liquid polymers and surface tension effects. Using these substrates, it was shown that the mean surface curvature has a strong impact on the rate of tissue growth and on the organization of the tissue structure. It was thereby not only demonstrated that the amount of tissue produced (i.e. growth rates) by the cells depends on the mean curvature of the substrate but also that the tissue surface behaves like a viscous fluid with an equilibrium shape governed by the Laplace-Young-law. It was observed that more tissue was formed on highly concave surfaces compared to flat or convex surfaces. Motivated by these observations, an analytical model was developed, where the rate of tissue growth is a function of the mean curvature, which could successfully describe the growth kinetics. This model was also able to reproduce the growth kinetics of previous experiments where tissues have been cultured in straight-sided prismatic pores. A second part of this thesis focuses on the tissue structure, which influences the mechanical properties of the mature bone tissue. Since the extracellular matrix is produced by the cells, the cell orientation has a strong impact on the direction of the tissue fibres. In addition, it was recently shown that some cell types exhibit collective alignment similar to liquid crystals. Based on this observation, a computational model of self-propelled active particles was developed to explore in an abstract manner how the collective behaviour of cells is influenced by 3D curvature. It was demonstrated that the 3D curvature has a strong impact on the self-organization of active particles and gives, therefore, first insights into the principles of self-organization of cells on curved surfaces.}, language = {en} } @phdthesis{Becker2001, author = {Becker, Thomas}, title = {3D-Spektroskopie hintergrundkontaminierter Einzelobjekte in Galaxien der lokalen Gruppe}, pages = {110 S.}, year = {2001}, language = {de} } @phdthesis{ColpanZenginoglu2007, author = {Colpan Zenginoglu, Anil}, title = {A conformal approach to numerical calculations of asymptotically flat spacetimes}, address = {Potsdam}, pages = {101 S. : graph. Darst.}, year = {2007}, language = {en} } @phdthesis{Albrecht2013, author = {Albrecht, Torsten}, title = {A dynamic memory of fracture processes in ice shelves}, address = {Potsdam}, pages = {167 S.}, year = {2013}, language = {en} } @phdthesis{Merlo2007, author = {Merlo, Claudia}, title = {A model of protein folding kinetics}, address = {Potsdam}, pages = {89 S. : graph. Darst.}, year = {2007}, language = {en} } @phdthesis{Oskinova2012, author = {Oskinova, Lida}, title = {A new understanding of the structured winds from massive stars : the implications for their X-ray emission, mass-loss diagnostics, and feedback}, address = {Potsdam}, year = {2012}, language = {en} } @phdthesis{Marx2016, author = {Marx, Robert}, title = {A quantitative model of spatial correlations in parametric down conversion for investigating complementarity at a double slit}, school = {Universit{\"a}t Potsdam}, pages = {135}, year = {2016}, language = {en} } @phdthesis{Sokolova2006, author = {Sokolova, Elena}, title = {A Study of large-scale Atmospheric Dynamics on the Basic of NCEP Data and AOGCM Simulations}, address = {Potsdam}, pages = {128 S. : graph. Darst.}, year = {2006}, language = {en} } @phdthesis{Eckert2019, author = {Eckert, Sebastian}, title = {Accessing active sites of molecular proton dynamics}, doi = {10.25932/publishup-42587}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-425870}, school = {Universit{\"a}t Potsdam}, pages = {xviii, 193}, year = {2019}, abstract = {The unceasing impact of intense sunlight on earth constitutes a continuous source of energy fueling countless natural processes. On a molecular level, the energy contained in the electromagnetic radiation is transferred through photochemical processes into chemical or thermal energy. In the course of such processes, photo-excitations promote molecules into thermally inaccessible excited states. This induces adaptations of their molecular geometry according to the properties of the excited state. Decay processes towards energetically lower lying states in transient molecular geometries result in the formation of excited state relaxation pathways. The photo-chemical relaxation mechanisms depend on the studied system itself, the interactions with its chemical environment and the character of the involved states. This thesis focuses on systems in which photo-induced deprotonation processes occur at specific atomic sites. To detect these excited-state proton dynamics at the affected atoms, a local probe of molecular electronic structure is required. Therefore, site-selective and orbital-specific K-edge soft X-ray spectroscopy techniques are used here to detect photo-induced proton dynamics in gaseous and liquid sample environments. The protonation of nitrogen (N) sites in organic molecules and the oxygen (O) atom in the water molecule are probed locally through transitions between 1s orbitals and the p-derived molecular valence electronic structure. The used techniques are X-ray absorption spectroscopy (XAS) and resonant inelastic X-ray scattering (RIXS). Both yield access to the unoccupied local valence electronic structure, whereas the latter additionally probes occupied states. We apply these probes in optical pump X-ray probe experiments to investigate valence excited-state proton transfer capabilities of aqueous 2-thiopyridone. A characteristic shift of N K-edge X-ray absorption resonances as well as a distinct X-ray emission line are established by us as spectral fingerprints of N deprotonation in the system. We utilize them to identify photo-induced N deprotonation of 2-thiopyridone on femtosecond timescales, in optical pump N K-edge RIXS probe measurements. We further establish excited state proton transfer mechanisms on picosecond and nanosecond timescales along the dominant relaxation pathways of 2-thiopyridone using transient N K-edge XAS. Despite being an excellent probe mechanism for valence excited-state proton dynamics, the K-edge core-excitation itself also disturbs the electronic structure at specific sites of a molecule. The rapid reaction of protons to 1s photo-excitations can yield directional structural distortions within the femtosecond core-excited state lifetime. These directional proton dynamics can change the energetic separation of eigenstates of the system and alter probabilities for radiative decay between them. Both effects yield spectral signatures of the dynamics in RIXS spectra. Using these signatures of RIXS transitions into electronically excited states, we investigate proton dynamics induced by N K-edge excitation in the amino-acid histidine. The minor core-excited state dynamics of histidine in basic and neutral chemical environments allow us to establish XAS and RIXS spectral signatures of different N protonation states at its imidazole N sites. Based on these signatures, we identify an excitation-site-independent N-H dissociation for N K-edge excitation under acidic conditions. Such directional structural deformations, induced by core-excitations, also make proton dynamics in electronic ground states accessible through RIXS transitions into vibrationally excited states. In that context, we interpret high resolution RIXS spectra of the water molecule for three O K-edge resonances based on quantum-chemical wave packet propagation simulations. We show that highly oriented ground state vibrational modes of coupled nuclear motion can be populated through RIXS processes by preparation of core-excited state nuclear wave packets with the same directionality. Based on that, we analytically derive the possibility to extract one-dimensional directional cuts through potential energy surfaces of molecular systems from the corresponding RIXS spectra. We further verify this concept through the extraction of the gas-phase water ground state potential along three coordinates from experimental data in comparison to quantum-chemical simulations of the potential energy surface. This thesis also contains contributions to instrumentation development for investigations of photo-induced molecular dynamics at high brilliance X-ray light sources. We characterize the setup used for the transient valence-excited state XAS measurements of 2-thiopyridone. Therein, a sub-micrometer thin liquid sample environment is established employing in-vacuum flat-jet technology, which enables a transmission experimental geometry. In combination with a MHz-laser system, we achieve a high detection sensitivity for photo-induced X-ray absorption changes. Additionally, we present conceptual improvements for temporal X-ray optical cross-correlation techniques based on transient changes of multilayer optical properties, which are crucial for the realization of femtosecond time-resolved studies at synchrotrons and free-electron lasers.}, language = {en} } @phdthesis{Kraus1996, author = {Kraus, Martin}, title = {Adh{\"a}sion und Dynamik von Vesikeln in {\"a}ußeren Feldern}, pages = {VIII, 110 S.}, year = {1996}, language = {de} } @phdthesis{Papastavrou2000, author = {Papastavrou, Georg}, title = {Adh{\"a}sion und Reibung molekularer definierter Oberfl{\"a}chen}, pages = {135 S.}, year = {2000}, language = {de} } @phdthesis{Weikl1999, author = {Weikl, Thomas R.}, title = {Adh{\"a}sion von mehrkomponentigen Membranen}, address = {Potsdam}, pages = {110 S. : graph. Darst.}, year = {1999}, language = {de} } @phdthesis{Stoll2022, author = {Stoll, Andreas}, title = {Advanced spectroscopic instruments enabled by integrated optics}, school = {Universit{\"a}t Potsdam}, pages = {97, XV}, year = {2022}, abstract = {The aim of this work is the study of silica Arrayed Waveguide Gratings (AWGs) in the context of applications in astronomy. The specific focus lies on the investigation of the feasibility and technology limits of customized silica AWG devices for high resolution near-infrared spectroscopy. In a series of theoretical and experimental studies, AWG devices of varying geometry, foot-print and spectral resolution are constructed, simulated using a combination of a numerical beam propagation method and Fraunhofer diffraction and fabricated devices are characterized with respect to transmission efficiency, spectral resolution and polarization sensitivity. The impact of effective index non-uniformities on the performance of high-resolution AWG devices is studied numerically. Characterization results of fabricated devices are used to extrapolate the technology limits of the silica platform. The important issues of waveguide birefringence and defocus aberration are discussed theoretically and addressed experimentally by selection of an appropriate aberration-minimizing anastigmatic AWG layout structure. The drawbacks of the anastigmatic AWG geometry are discussed theoretically. From the results of the experimental studies, it is concluded that fabrication-related phase errors and waveguide birefringence are the primary limiting factors for the growth of AWG spectral resolution. It is shown that, without post-processing, the spectral resolving power is phase-error-limited to R < 40, 000 and, in the case of unpolarized light, birefringence-limited to R < 30, 000 in the AWG devices presented in this work. Necessary measures, such as special waveguide geometries and post-fabrication phase error correction are proposed for future designs. The elimination of defocus aberration using an anastigmatic AWG geometry is successfully demonstrated in experiment. Finally, a novel, non-planar dispersive in-fibre waveguide structure is proposed, discussed and studied theoretically.}, language = {en} } @phdthesis{Hermsdorf1999, author = {Hermsdorf, Nadja}, title = {Aggregationsverhalten von Polyelektrolyt-Blockcopolymeren}, pages = {124 S. : graph. Darst.}, year = {1999}, language = {de} } @phdthesis{Foerster1998, author = {F{\"o}rster, Stephan}, title = {Amphiphile Blockcopolymere - Synthese, Selbstorganisation und Funktionalisierung}, pages = {205 Bl. : graph. Darst.}, year = {1998}, language = {de} } @phdthesis{SeehaferPipin2009, author = {Seehafer, Norbert and Pipin, Valerij V.}, title = {An advective solar-type dynamo without the alpha effect}, issn = {0004-6361}, doi = {10.1051/0004-6361/200912614}, year = {2009}, abstract = {Context: Most solar and stellar dynamo models use the alpha-Omega scenario where the magnetic field is generated by the interplay between differential rotation (the Omega effect) and a mean electromotive force due to helical turbulent convection flows (the alpha effect). There are, however, turbulent dynamo mechnisms that may complement the alpha effect or may be an alternative to it. Aims: We investigate models of solar-type dynamos where the alpha effect is completely replaced by two other turbulent dynamo mechanisms, namely the Omega x J effect and the shear- current effect, which both result from an inhomogeneity of the mean magnetic field. Methods: We studied axisymmetric mean-field dynamo models containing differential rotation, the Omega x J and shear-current effects, and a meridional circulation. The model calculations were carried out using the rotation profile of the Sun as obtained from helioseismic measurements and radial profiles of other quantities according to a standard model of the solar interior. Results: Without meridional flow, no satisfactory agreement of the models with the solar observations can be obtained. With a sufficiently strong meridional circulation included, however, the main properties of the large-scale solar magnetic field, namely, its oscillatory behavior, its latitudinal drift towards the equator within each half cycle, and its dipolar parity with respect to the equatorial plane, are correctly reproduced. Conclusions: We have thereby constructed the first mean-field models of solar-type dynamos that do not use the alpha effect.}, language = {en} } @phdthesis{Tambornino2010, author = {Tambornino, Johannes}, title = {An analysis of the low energy regime of loop quantum gravity}, address = {Potsdam}, pages = {ix, 169 S.}, year = {2010}, language = {en} } @phdthesis{Bastian2023, author = {Bastian, Martin}, title = {An emergent machine learning approach for seasonal cyclone activity forecasts}, school = {Universit{\"a}t Potsdam}, pages = {135}, year = {2023}, abstract = {Seasonal forecasts are of great interest in many areas. Knowing the amount of precipitation for the upcoming season in regions of water scarcity would facilitate a better water management. If farmers knew the weather conditions of the upcoming summer at sowing time, they could select those cereal species that are best adapted to these conditions. This would allow farmers to improve the harvest and potentially even reduce the amount of pesticides used. However, the undoubted advantages of seasonal forecasts are often opposed by their high degree of uncertainty. The great challenge of generating seasonal forecasts with lead times of several months mainly originates from the chaotic nature of the earth system. In a chaotic system, even tiny differences in the initial conditions can lead to strong deviations in the system's state in the long run. In this dissertation we propose an emergent machine learning approach for seasonal forecasting, called the AnlgModel. The AnlgModel combines the analogue method with myopic feature selection and bootstrapping. To benchmark the abilities of the AnlgModel we apply it to seasonal cyclone activity forecasts in the North Atlantic and Northwest Pacific. The AnlgModel demonstrates competitive hindcast skills with two operational forecasts and even outperforms these for long lead times. In the second chapter we comprehend the forecasting strategy of the Anlg-Model. We thereby analyse the analogue selection process for the 2017 North Atlantic and the 2018 Northwest Pacific seasonal cyclone activity. The analysis shows that those climate indices which are known to influence the seasonal cyclone activity, such as the Ni{\~n}o 3.4 SST, are correctly represented among the selected analogues. Furthermore the selected analogues reflect large-scale climate patterns that were identified by expert reports as being determinative for these particular seasons. In the third chapter we analyse the features that are used by the AnlgModel for its predictions. We therefore inspect the feature relevance (FR). The FR patterns learned by the AnlgModel show a high congruence with the predictor regions used by the operational forecasts. However, the AnlgModel also discovered new features, such as the SST anomaly in the Gulf of Guinea during November. This SST pattern exhibits a remarkably high predictive potential for the upcoming Atlantic hurricane activity. In the final chapter we investigate potential mechanisms, that link two of these regions with high feature relevance to the Atlantic hurricane activity. We mainly focus on ocean surface transport. The ocean surface flow paths are calculated using Lagrangian particle analysis. We demonstrate that the FR patterns in the region of the Canary islands do not correspond with ocean surface transport. It is instead likely that these FR patterns fingerprint a wind transport of latent heat. The second region to be studied is situated in the Gulf of Guinea. Our analysis shows that the FR patterns seen there do fingerprint ocean surface transport. However, our simulations also show that at least one other mechanism is involved in linking the Gulf of Guinea SST anomaly in November to the hurricane activity of the upcoming season. In this work the AnlgModel does not only demonstrate its outstanding forecast skills but also shows its capabilities as research tool for detecting oceanic and atmospheric mechanisms.}, language = {en} } @phdthesis{Sprengel1992, author = {Sprengel, Jens-Uwe}, title = {Analyse der Transfermatrizen geschichteter anisotroper Medien}, pages = {92 Bl., 3 S.}, year = {1992}, language = {de} }