@article{RawelKrollHaebeletal.1998, author = {Rawel, Harshadrai Manilal and Kroll, J{\"u}rgen and Haebel, Sophie and Peter, Martin G.}, title = {Reactions of a glucosinolate breakdown product (benzyl-isothiocyanate) with myoglobin}, year = {1998}, language = {en} } @article{HaebelBahrkePeter2007, author = {Haebel, Sophie and Bahrke, Sven and Peter, Martin G.}, title = {Quantitative sequencing of complex mixtures of heterochitooligosaccharides by vMALDI-linear ion trap mass spectrometry}, issn = {0003-2700}, doi = {10.1021/Ac062254u}, year = {2007}, abstract = {Heterochitooligosaccharides possess interesting biol. properties. Isobaric mixts. of such linear heterochitooligosaccharides can be obtained by chem. or enzymic degrdn. of chitosan. However, the sepn. of such mixts. is a challenging anal. problem which is so far unresolved. It is shown that these isobaric mixts. can be sequenced and quantified simultaneously using std. derivatization and multistage tandem mass spectrometric techniques. A linear ion trap mass spectrometer equipped with a vacuum matrix-assisted laser desorption ionization (vMALDI) source is used to perform MS2 as well as MS3 expts. [on SciFinder (R)].}, language = {en} } @article{GehmlichHayessLegleretal.2010, author = {Gehmlich, Katja and Hayess, Katrin and Legler, Christof and Haebel, Sophie and van der Ven, Peter F. M. and Ehler, Elisabeth and Fuerst, Dieter O.}, title = {Ponsin interacts with Nck adapter proteins : implications for a role in cytoskeletal remodelling during differentiation of skeletal muscle cells}, issn = {0171-9335}, doi = {10.1016/j.ejcb.2009.10.019}, year = {2010}, abstract = {Skeletal muscle differentiation is a complex process: It is characterised by changes in gene expression and protein composition. Simultaneously, a dramatic remodelling of the cytoskeleton and associated cell-matrix contacts, the costameres, occurs. The expression and localisation of the protein ponsin at cell-matrix contacts marks the establishment of costameres. In this report we show that skeletal muscle cells are characterised by a novel ponsin isoform, which contains a large insertion in its carboxy-terminus. This skeletal muscle-specific module binds the adapter proteins Nck1 and Nck2, and increased co-localisation of ponsin with Nck2 is observed at remodelling cell-matrix contacts of differentiating skeletal muscle cells. Since this ponsin insertion can be phosphorylated, it may adjust the interaction affinity with Nck adapter proteins. The novel ponsin isoform and its interaction with Nck1/2 provide exciting insight into the convergence of signalling pathways at the costameres, and its crucial role for skeletal muscle differentiation and re-generation.}, language = {en} } @article{DauvilleeChochoisSteupetal.2006, author = {Dauvillee, David and Chochois, Vincent and Steup, Martin and Haebel, Sophie and Eckermann, Nora and Ritte, Gerhard and Ral, Jean-Philippe and Colleoni, Christophe and Hicks, Glenn and Wattebled, Fabrice and Deschamps, Philippe and Lienard, Luc and Cournac, Laurent and Putaux, Jean-Luc and Dupeyre, Danielle and Ball, Steven G.}, title = {Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii}, series = {The plant journal}, volume = {48}, journal = {The plant journal}, number = {2}, publisher = {Blackwell}, address = {Oxford}, issn = {0960-7412}, doi = {10.1111/j.1365-313X.2006.02870.x}, pages = {274 -- 285}, year = {2006}, abstract = {Among the three distinct starch phosphorylase activities detected in Chlamydomonas reinhardtii, two distinct plastidial enzymes (PhoA and PhoB) are documented while a single extraplastidial form (PhoC) displays a higher affinity for glycogen as in vascular plants. The two plastidial phosphorylases are shown to function as homodimers containing two 91-kDa (PhoA) subunits and two 110-kDa (PhoB) subunits. Both lack the typical 80-amino-acid insertion found in the higher plant plastidial forms. PhoB is exquisitely sensitive to inhibition by ADP-glucose and has a low affinity for malto-oligosaccharides. PhoA is more similar to the higher plant plastidial phosphorylases: it is moderately sensitive to ADP-glucose inhibition and has a high affinity for unbranched malto-oligosaccharides. Molecular analysis establishes that STA4 encodes PhoB. Chlamydomonas reinhardtii strains carrying mutations at the STA4 locus display a significant decrease in amounts of starch during storage that correlates with the accumulation of abnormally shaped granules containing a modified amylopectin structure and a high amylose content. The wild-type phenotype could be rescued by reintroduction of the cloned wild-type genomic DNA, thereby demonstrating the involvement of phosphorylase in storage starch synthesis.}, language = {en} } @article{RawelKrollRieseSchneideretal.1998, author = {Rawel, Harshadrai Manilal and Kroll, J{\"u}rgen and Riese-Schneider, Brigitte and Haebel, Sophie}, title = {Physicochemical and enzymatic properties of Benzyl-Isothiocyanate derivatized proteinases}, year = {1998}, language = {en} } @article{RitteScharfEckermannetal.2004, author = {Ritte, Gerhard and Scharf, Anke and Eckermann, Nora and Haebel, Sophie and Steup, Martin}, title = {Phosphorylation of transitory starch is increased during degradation}, year = {2004}, abstract = {The starch excess phenotype of Arabidopsis mutants defective in the starch phosphorylating enzyme glucan, water dikinase (EC 2.7.9.4) indicates that phosphorylation of starch is required for its degradation. However, the underlying mechanism has not yet been elucidated. In this study, two in vivo systems have been established that allow the analysis of phosphorylation of transitory starch during both biosynthesis in the light and degradation in darkness. First, a photoautotrophic culture of the unicellular green alga Chlamydomonas reinhardtii was used to monitor the incorporation of exogenously supplied P-32 orthophosphate into starch. Illuminated cells incorporated P-32 into starch with a constant rate during 2 h. By contrast, starch phosphorylation in darkened cells exceeded that in illuminated cells within the first 30 min, but subsequently phosphate incorporation declined. Pulse-chase experiments performed with P-32/P-31 orthophosphate revealed a high turnover of the starch-bound phosphate esters in darkened cells but no detectable turnover in illuminated cells. Secondly, leaf starch granules were isolated from potato (Solanum tuberosum) plants grown under controlled conditions and glucan chains from the outer granule layer were released by isoamylase. Phosphorylated chains were purified and analyzed using high performance anion-exchange chromatography and matrix-assisted laser desorption/ionization mass spectrometry. Glucans released from the surface of starch granules that had been isolated from darkened leaves possessed a considerably higher degree of phosphorylation than those prepared from leaves harvested during the light period. Thus, in the unicellular alga as well as in potato leaves, net starch degradation is accompanied with an increased phosphorylation of starch}, language = {en} } @article{RitteHeydenreichMahlowetal.2006, author = {Ritte, Gerhard and Heydenreich, Matthias and Mahlow, Sebastian and Haebel, Sophie and Koetting, Oliver and Steup, Martin}, title = {Phosphorylation of C6- and C3-positions of glucosyl residues in starch is catalysed by distinct dikinases}, series = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, volume = {580}, journal = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, number = {20}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0014-5793}, doi = {10.1016/j.febslet.2006.07.085}, pages = {4872 -- 4876}, year = {2006}, abstract = {Glucan, water dikinase (GWD) and phosphoglucan, water dikinase (PWD) are required for normal starch metabolism. We analysed starch phosphorylation in Arabidopsis wildtype plants and mutants lacking either GWD or PWD using P-31 NMR. Phosphorylation at both C6- and C3-positions of glucose moieties in starch was drastically decreased in GWD-deficient mutants. In starch from PWD-deficient plants C3-bound phosphate was reduced to levels close to the detection limit. The latter result contrasts with previous reports according to which GWD phosphorylates both C6- and C3-positions. In these studies, phosphorylation had been analysed by HPLC of acid-hydrolysed glucans. We now show that maltose-6-phosphate, a product of incomplete starch hydrolysis, co-eluted with glucose-3-phosphate under the chromatographic conditions applied. Re-examination of the specificity of the dikinases using an improved method demonstrates that C6- and C3-phosphorylation is selectively catalysed by GWD and PWD, respectively.}, language = {en} } @article{StrehmelSarkerLahtietal.2005, author = {Strehmel, Veronika and Sarker, A. M. and Lahti, P. M. and Karasz, F. E. and Heydenreich, Matthias and Wetzel, Hendrik and Haebel, Sophie and Strehmel, Bernd}, title = {One- and two-photon photochemistry and photophysics of poly(arylenevinylene)s containing a biphenyl moiety}, issn = {1439-4235}, year = {2005}, abstract = {Photochemical and photophysical properties were investigated for poly(arylenevinylene)s containing a flexible biphenyl "hinge" unit by applying one-photon (OP) and two-photon (TP) excitation to explore excited-state properties. The poly(arylenevinylene)s were poly[(2,5-dihexyloxy-p-phenylenevinylene)-alt-(4,4'-dihexyloxy-3,3'-biph enylenevinylene)] (1), poly[(2,5-dihexyloxy-p-phenylenevinylene)-alt-(2,2'-dihexyloxy-3,3'-biph enylenevinylene)] (2), and poly[(2,5-dihexyloxy-p-phenylenevinylene)-alt-(2,2'-biphenylene-vinylene )] (3). Effective emission quantum yields and related photonic properties were evaluated on a realistic per-chromophore basis using effective conjugation lengths based on the Strickler-Berg relationship. intramolecular photocyclization was deduced to occur in the one case where the biphenyl molecular connectivity permitted the reaction, based on matrix- assisted loser desorption/ionization time-of-flight (MALDI-TOF), heteronuclear multiple-quantum coherence (HMQC)-NMR, and gel-permeation chromatography (GPC) results. The various photoprocesses could be induced by either OP or TP excitation, though the first excited singlet state is the photoactive state. The higher excitation energy 1 of the TP excited state favors indirect population of the S, state by electronic coupling between the TP and OP excited states [lambda(max)(TPE) (nm): 726; delta (GM)([9]): 1 = 229, 2 = 215, 3 = 109). Photochemical processes occurring from the lowest OP excited state (S-1) could therefore also be indirectly induced by TP excitation}, language = {en} } @article{DeschampsHaferkampDauvilleeetal.2006, author = {Deschamps, Philippe and Haferkamp, Ilka and Dauvillee, David and Haebel, Sophie and Steup, Martin and Buleon, Alain and Putaux, Jean-Luc and Colleoni, Christophe and d'Hulst, Christophe and Plancke, Charlotte and Gould, Sven and Maier, Uwe and Neuhaus, Heinz Eckhard and Ball, Steven G.}, title = {Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta}, issn = {1535-9778}, doi = {10.1128/Ec.00380-05}, year = {2006}, abstract = {The nature of the periplastidial pathway of starch biosynthesis was investigated with the model cryptophyte Guillardia theta. The storage polysaccharide granules were shown to be composed of both amylose and amylopectin fractions with a chain length distribution and crystalline organization very similar to those of starch from green algae and land plants. Most starch granules displayed a shape consistent with biosynthesis occurring around the pyrenoid through the rhodoplast membranes. A protein with significant similarity to the amylose-synthesizing granule-bound starch syntbase 1 from green plants was found as the major polypeptide bound to the polysaccharide matrix. N-terminal sequencing of the mature protein proved that the precursor protein carries a nonfunctional transit peptide in its bipartite topogenic signal sequence which is cleaved without yielding transport of the enzyme across the two inner plastid membranes. The enzyme was shown to display similar affinities for ADP and UDP-glucose, while the V-max measured with UDP-glucose was twofold higher. The granule-bound starch synthase from Guillardia theta was demonstrated to be responsible for the synthesis of long glucan chains and therefore to be the functional equivalent of the amylose- synthesizing enzyme of green plants. Preliminary characterization of the starch pathway suggests that Guillardia theta utilizes a UDP-glucose-based pathway to synthesize starch}, language = {en} } @article{GrunwaldtHaebelSpitzetal.2002, author = {Grunwaldt, Gisela and Haebel, Sophie and Spitz, Christian and Steup, Martin and Menzel, Ralf}, title = {Multiple binding sites of fluorescein isothiocyanate moieties on myoglobin : photophysical heterogeneity as revealed by ground- and excited-state spectroscopy}, issn = {1011-1344}, year = {2002}, language = {en} } @article{GerickeRailaSehoulietal.2005, author = {Gericke, Beate and Raila, Jens and Sehouli, Jalid and Haebel, Sophie and Konsgen, D. and Mustea, A. and Schweigert, Florian J.}, title = {Microheterogeneity of transthyretin in serum and ascitic fluid of ovarian cancer patients}, issn = {1471-2407}, year = {2005}, abstract = {Background: Transthyretin (TTR), a traditional biomarker for nutritional and inflammatory status exists in different molecular variants of yet unknown importance. A truncated form of TTR has recently been described to be part of a set of biomarkers for the diagnosis of ovarian cancer. The main aim of the study was therefore to characterize differences in microheterogeneity between ascitic fluid and plasma of women affected with ovarian cancer and to evaluate the tumor site as the possible source of TTR. Methods: Subjects were 48 women with primary invasive epithelial ovarian cancer or recurrent ovarian carcinoma. The control group consisted of 20 postmenopausal women. TTR and retinol-binding protein (RBP) levels were measured by enzyme-linked immunoassay ( ELISA) and C-reactive protein (CRP) levels by a high- sensitivity latex particle turbidimetric assay. The molecular heterogeneity of TTR was analysed using immunoprecipitation and matrix-associated laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS). Presence of TTR in tumor tissue was determined with indirect peroxidase immunostaining. Results: TTR and RBP (mu g/ml) levels in serum were 148.5 +/- 96.7 and 22.5 +/- 14.8 in affected women compared to 363.3 +/- 105.5 and 55.8 +/- 9.3 in healthy postmenopausal women ( p < 0.01). In ascitic fluid, levels were 1.02 +/- 0.24 and 4.63 +/- 1.57 mu g/ml, respectively. The mean levels of TTR and RBP in serum showed a tendency to decrease with the severity of the disease and were lower in affected women whose CRP levels were > 40 mg/ml ( p = 0.08 for TTR; p < 0.05 for RBP). No differences in TTR microheterogeneity were observed between TTR isolated from serum of affected and healthy women or from ascitic fluid. TTR occurred rather consistently in four variants. Mass signals were at 13758 +/- 7, 13876 +/- 13 ( greatest intensity), 13924 +/- 21 and 14062 +/- 24 Da, representing native, S-cysteinylated, S-cysteinglycinylated and glutathionylated TTR, respectively. Serum of healthy and affected women as well as ascitic fluid contained the truncated fragment of TTR ( 12828 +/- 11 Da). No immunoreactive TTR was observed in the tumor sites. Conclusion: The severity of the cancer associated catabolism as well as the inflammation status affect serum TTR and RBP levels. Neither TTR nor its truncated form originates from tumor tissue and its occurrence in ascites may well reflect the filtration from blood into ascitic fluid}, language = {en} } @article{HaebelPeterKatalinicPeter1997, author = {Haebel, Sophie and Peter-Katalinic, Jasna and Peter, Martin G.}, title = {Mass spectrometry of chitooligosaccharides}, isbn = {88-86889- 01-1}, year = {1997}, language = {en} } @article{HaebelHejaziFrohbergetal.2008, author = {Haebel, Sophie and Hejazi, Mahdi and Frohberg, Claus and Heydenreich, Matthias and Ritte, Gerhard}, title = {Mass spectrometric quantification of the relative amounts of C6 and C3 position phosphorylated glucosyl residues in starch}, issn = {0003-2697}, year = {2008}, abstract = {The quantification of phosphate bound to the C6 and C3 positions of glucose residues in starch has received increasing interest since the importance of starch phosphorylation for plant metabolism was discovered. The method described here is based on the observation that the isobaric compounds glucose-6-phosphate (Glc6P) and glucose-3- phosphate (Glc3P) exhibit significantly different fragmentation patterns in negative ion electrospray tandem mass spectrometry (MS/MS). A simple experiment involving collision-induced dissociation (CID) MS2 spectra of the sample and the two reference substances Glc3P and Glc6P permitted the quantification of the relative amounts of the two compounds in monosaccharide mixtures generated by acid hydrolysis of starch. The method was tested on well-characterized potato tuber starch. The results are consistent with those obtained by NMR analysis. In contrast to NMR, however, the presented method is fast and can be performed on less than 1 mg of starch. Starch samples of other origins exhibiting a variety of phosphorylation degrees were analyzed to assess the sensitivity and robustness of the method.}, language = {en} } @article{StoeckigtHaebel1998, author = {St{\"o}ckigt, Detlef and Haebel, Sophie}, title = {Identification of CID fragments from a protonated glutathione conjugate by isotope-specific MS3 experiments in an ion trap}, year = {1998}, language = {en} } @article{AsgeirssonHaebelThorsteinssonetal.1998, author = {Asgeirsson, Bjarni and Haebel, Sophie and Thorsteinsson, Leifur and Helgason, Erlendur and Gudmundsson, Kristbj{\"o}rn O. and Gudmundsson, Gunnar and Roepstorff, Peter}, title = {Hereditary cystatin C amyloid angiopathy: monitoring the presence of the Leu-68 -> Gln cystatin C variant in cerebrospinal fluids and monocyte cultures by MS}, year = {1998}, language = {en} } @article{TsukamotoHaebelValencaetal.2008, author = {Tsukamoto, Junko and Haebel, Sophie and Valenca, Gustavo P. and Peter, Martin G. and FRanco, Telma T.}, title = {Enzymatic direct synthesis of acrylic acid esters of mono- and disaccharides}, issn = {0268-2575}, year = {2008}, abstract = {Background: There is an increased need to replace materials derived from fossil sources by renewables. Sugar- cane derived carbohydrates are very abundant in Brazil and are the cheapest sugars available in the market, with more than 400 million tons of sugarcane processed in the year 2007. The objective of this work was to study the prepn. of sugar acrylates from free sugars and free acrylic acid, thus avoiding the previous prepn. of protected sugar derivs., such as glycosides, or activated acrylates, such as vinyl acrylate. Results: Lipase catalyzed esterification of three mono- and two disaccharides with acrylic acid, in the presence or absence of mol. sieves was investigated. The reactions were monitored by high-performance liq. chromatog. (HPLC) and the products were analyzed by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry. The main products are mono- and diacrylates, while higher esters are formed as minor products. The highest conversion to sugar acrylates was obsd. for the D-glucose and D- fructose, followed by D-xylose and D-maltose. Mol. sieves had no pronounced effect on the conversion. Conclusions: A feasible method is described to produce and to characterize sugar acrylates, including those contg. more than two acrylate groups. The process for prodn. of these higher esters could potentially be optimized further to produce mols. for crosslinking in acrylate polymn. and other applications. The direct enzymic esterification of free carbohydrates with acrylic acid is unprecedented. [on SciFinder (R)].}, language = {en} } @article{HaebelAlbrechtSparbieretal.1998, author = {Haebel, Sophie and Albrecht, Tanja and Sparbier, Katrin and Walden, Peter and K{\"o}rner, Roman and Steup, Martin}, title = {Electrophoresis-related protein modification: alkylation of carboxy residues revealed by mass spectrometry}, year = {1998}, language = {en} } @article{RitteEckermannHaebeletal.2000, author = {Ritte, Gerhard and Eckermann, Nora and Haebel, Sophie and Lorberth, Ruth and Steup, Martin}, title = {Compartmentation of the starch-related R1 protein in higher plants}, year = {2000}, language = {en} } @article{BahrkeEinarssonGislasonetal.2003, author = {Bahrke, Sven and Einarsson, Jon M. and Gislason, Johannes and Haebel, Sophie and Peter-Katalinic, Jasna}, title = {Characterization of chitooligosaccharides by mass spectrometry}, isbn = {82-471-5901-5}, year = {2003}, abstract = {Heterochitooligosaccharides of DP 6, DP 9, and DP 12 were evaluated using established methods of derivatization and matrix-assisted laser desorption ionization post source decay mass spectrometry.}, language = {en} } @phdthesis{BahrkeEinarssonGislasonetal.2003, author = {Bahrke, Sven and Einarsson, Jon M. and Gislason, Johannes and Haebel, Sophie and Peter-Katalinic, Jasna and Peter, Martin G.}, title = {Characterization of chitooligosaccharides by mass spectrometry}, isbn = {82-47-15901-5}, year = {2003}, language = {en} }