@article{RezaeiYangMeinel2020,
  author    = {Rezaei, Mina and Yang, Haojin and Meinel, Christoph},
  title     = {Recurrent generative adversarial network for learning imbalanced medical image semantic segmentation},
  series = {Multimedia tools and applications : an international journal},
  volume    = {79},
  journal   = {Multimedia tools and applications : an international journal},
  number    = {21-22},
  publisher = {Springer},
  address   = {Dordrecht},
  issn      = {1380-7501},
  doi       = {10.1007/s11042-019-7305-1},
  pages     = {15329 -- 15348},
  year      = {2020},
  abstract  = {We propose a new recurrent generative adversarial architecture named RNN-GAN to mitigate imbalance data problem in medical image semantic segmentation where the number of pixels belongs to the desired object are significantly lower than those belonging to the background. A model trained with imbalanced data tends to bias towards healthy data which is not desired in clinical applications and predicted outputs by these networks have high precision and low recall. To mitigate imbalanced training data impact, we train RNN-GAN with proposed complementary segmentation mask, in addition, ordinary segmentation masks. The RNN-GAN consists of two components: a generator and a discriminator. The generator is trained on the sequence of medical images to learn corresponding segmentation label map plus proposed complementary label both at a pixel level, while the discriminator is trained to distinguish a segmentation image coming from the ground truth or from the generator network. Both generator and discriminator substituted with bidirectional LSTM units to enhance temporal consistency and get inter and intra-slice representation of the features. We show evidence that the proposed framework is applicable to different types of medical images of varied sizes. In our experiments on ACDC-2017, HVSMR-2016, and LiTS-2017 benchmarks we find consistently improved results, demonstrating the efficacy of our approach.},
  language  = {en}
}
@article{RezaeiNaeppiLippertetal.2020,
  author    = {Rezaei, Mina and N{\"a}ppi, Janne J. and Lippert, Christoph and Meinel, Christoph and Yoshida, Hiroyuki},
  title     = {Generative multi-adversarial network for striking the right balance in abdominal image segmentation},
  series = {International journal of computer assisted radiology and surgery},
  volume    = {15},
  journal   = {International journal of computer assisted radiology and surgery},
  number    = {11},
  publisher = {Springer},
  address   = {Berlin},
  issn      = {1861-6410},
  doi       = {10.1007/s11548-020-02254-4},
  pages     = {1847 -- 1858},
  year      = {2020},
  abstract  = {Purpose: The identification of abnormalities that are relatively rare within otherwise normal anatomy is a major challenge for deep learning in the semantic segmentation of medical images. The small number of samples of the minority classes in the training data makes the learning of optimal classification challenging, while the more frequently occurring samples of the majority class hamper the generalization of the classification boundary between infrequently occurring target objects and classes. In this paper, we developed a novel generative multi-adversarial network, called Ensemble-GAN, for mitigating this class imbalance problem in the semantic segmentation of abdominal images. Method: The Ensemble-GAN framework is composed of a single-generator and a multi-discriminator variant for handling the class imbalance problem to provide a better generalization than existing approaches. The ensemble model aggregates the estimates of multiple models by training from different initializations and losses from various subsets of the training data. The single generator network analyzes the input image as a condition to predict a corresponding semantic segmentation image by use of feedback from the ensemble of discriminator networks. To evaluate the framework, we trained our framework on two public datasets, with different imbalance ratios and imaging modalities: the Chaos 2019 and the LiTS 2017. Result: In terms of the F1 score, the accuracies of the semantic segmentation of healthy spleen, liver, and left and right kidneys were 0.93, 0.96, 0.90 and 0.94, respectively. The overall F1 scores for simultaneous segmentation of the lesions and liver were 0.83 and 0.94, respectively. Conclusion: The proposed Ensemble-GAN framework demonstrated outstanding performance in the semantic segmentation of medical images in comparison with other approaches on popular abdominal imaging benchmarks. The Ensemble-GAN has the potential to segment abdominal images more accurately than human experts.},
  language  = {en}
}
@phdthesis{Rezaei2019,
  author    = {Rezaei, Mina},
  title     = {Deep representation learning from imbalanced medical imaging},
  doi       = {10.25932/publishup-44275},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-442759},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xxviii, 160},
  year      = {2019},
  abstract  = {Medical imaging plays an important role in disease diagnosis, treatment planning, and clinical monitoring. One of the major challenges in medical image analysis is imbalanced training data, in which the class of interest is much rarer than the other classes. Canonical machine learning algorithms suppose that the number of samples from different classes in the training dataset is roughly similar or balance. Training a machine learning model on an imbalanced dataset can introduce unique challenges to the learning problem. A model learned from imbalanced training data is biased towards the high-frequency samples. The predicted results of such networks have low sensitivity and high precision. In medical applications, the cost of misclassification of the minority class could be more than the cost of misclassification of the majority class. For example, the risk of not detecting a tumor could be much higher than referring to a healthy subject to a doctor. The current Ph.D. thesis introduces several deep learning-based approaches for handling class imbalanced problems for learning multi-task such as disease classification and semantic segmentation. At the data-level, the objective is to balance the data distribution through re-sampling the data space: we propose novel approaches to correct internal bias towards fewer frequency samples. These approaches include patient-wise batch sampling, complimentary labels, supervised and unsupervised minority oversampling using generative adversarial networks for all. On the other hand, at algorithm-level, we modify the learning algorithm to alleviate the bias towards majority classes. In this regard, we propose different generative adversarial networks for cost-sensitive learning, ensemble learning, and mutual learning to deal with highly imbalanced imaging data. We show evidence that the proposed approaches are applicable to different types of medical images of varied sizes on different applications of routine clinical tasks, such as disease classification and semantic segmentation. Our various implemented algorithms have shown outstanding results on different medical imaging challenges.},
  language  = {en}
}
@book{AdrianoBleifussChengetal.2019,
  author    = {Adriano, Christian and Bleifuß, Tobias and Cheng, Lung-Pan and Diba, Kiarash and Fricke, Andreas and Grapentin, Andreas and Jiang, Lan and Kovacs, Robert and Krejca, Martin Stefan and Mandal, Sankalita and Marwecki, Sebastian and Matthies, Christoph and Mattis, Toni and Niephaus, Fabio and Pirl, Lukas and Quinzan, Francesco and Ramson, Stefan and Rezaei, Mina and Risch, Julian and Rothenberger, Ralf and Roumen, Thijs and Stojanovic, Vladeta and Wolf, Johannes},
  title     = {Technical report},
  number    = {129},
  editor    = {Meinel, Christoph and Plattner, Hasso and D{\"o}llner, J{\"u}rgen Roland Friedrich and Weske, Mathias and Polze, Andreas and Hirschfeld, Robert and Naumann, Felix and Giese, Holger and Baudisch, Patrick and Friedrich, Tobias and B{\"o}ttinger, Erwin and Lippert, Christoph},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-465-4},
  issn      = {1613-5652},
  doi       = {10.25932/publishup-42753},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427535},
  publisher      = {Universit{\"a}t Potsdam},
  pages     = {vi, 267},
  year      = {2019},
  abstract  = {Design and Implementation of service-oriented architectures imposes a huge number of research questions from the fields of software engineering, system analysis and modeling, adaptability, and application integration. Component orientation and web services are two approaches for design and realization of complex web-based system. Both approaches allow for dynamic application adaptation as well as integration of enterprise application. Commonly used technologies, such as J2EE and .NET, form de facto standards for the realization of complex distributed systems. Evolution of component systems has lead to web services and service-based architectures. This has been manifested in a multitude of industry standards and initiatives such as XML, WSDL UDDI, SOAP, etc. All these achievements lead to a new and promising paradigm in IT systems engineering which proposes to design complex software solutions as collaboration of contractually defined software services. Service-Oriented Systems Engineering represents a symbiosis of best practices in object-orientation, component-based development, distributed computing, and business process management. It provides integration of business and IT concerns. The annual Ph.D. Retreat of the Research School provides each member the opportunity to present his/her current state of their research and to give an outline of a prospective Ph.D. thesis. Due to the interdisciplinary structure of the research school, this technical report covers a wide range of topics. These include but are not limited to: Human Computer Interaction and Computer Vision as Service; Service-oriented Geovisualization Systems; Algorithm Engineering for Service-oriented Systems; Modeling and Verification of Self-adaptive Service-oriented Systems; Tools and Methods for Software Engineering in Service-oriented Systems; Security Engineering of Service-based IT Systems; Service-oriented Information Systems; Evolutionary Transition of Enterprise Applications to Service Orientation; Operating System Abstractions for Service-oriented Computing; and Services Specification, Composition, and Enactment.},
  language  = {en}
}