@article{GluecklerHerzschuhKruseetal.2021, author = {Gl{\"u}ckler, Ramesh and Herzschuh, Ulrike and Kruse, Stefan and Andreev, Andrei and Vyse, Stuart Andrew and Winkler, Bettina and Biskaborn, Boris and Pestryakova, Luidmila Agafyevna and Dietze, Elisabeth}, title = {Wildfire history of the boreal forest of south-western Yakutia (Siberia) over the last two millennia documented by a lake-sediment charcoal record}, series = {Biogeosciences : BG / European Geosciences Union}, volume = {18}, journal = {Biogeosciences : BG / European Geosciences Union}, number = {13}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-18-4185-2021}, pages = {4185 -- 4209}, year = {2021}, abstract = {Wildfires, as a key disturbance in forest ecosystems, are shaping the world's boreal landscapes. Changes in fire regimes are closely linked to a wide array of environmental factors, such as vegetation composition, climate change, and human activity. Arctic and boreal regions and, in particular, Siberian boreal forests are experiencing rising air and ground temperatures with the subsequent degradation of permafrost soils leading to shifts in tree cover and species composition. Compared to the boreal zones of North America or Europe, little is known about how such environmental changes might influence long-term fire regimes in Russia. The larch-dominated eastern Siberian deciduous boreal forests differ markedly from the composition of other boreal forests, yet data about past fire regimes remain sparse. Here, we present a high-resolution macroscopic charcoal record from lacustrine sediments of Lake Khamra (southwest Yakutia, Siberia) spanning the last ca. 2200 years, including information about charcoal particle sizes and morphotypes. Our results reveal a phase of increased charcoal accumulation between 600 and 900 CE, indicative of relatively high amounts of burnt biomass and high fire frequencies. This is followed by an almost 900-year-long period of low charcoal accumulation without significant peaks likely corresponding to cooler climate conditions. After 1750 CE fire frequencies and the relative amount of biomass burnt start to increase again, coinciding with a warming climate and increased anthropogenic land development after Russian colonization. In the 20th century, total charcoal accumulation decreases again to very low levels despite higher fire frequency, potentially reflecting a change in fire management strategies and/or a shift of the fire regime towards more frequent but smaller fires. A similar pattern for different charcoal morphotypes and comparison to a pollen and non-pollen palynomorph (NPP) record from the same sediment core indicate that broad-scale changes in vegetation composition were probably not a major driver of recorded fire regime changes. Instead, the fire regime of the last two millennia at Lake Khamra seems to be controlled mainly by a combination of short-term climate variability and anthropogenic fire ignition and suppression.}, language = {en} } @article{KlemmHerzschuhPestryakova2016, author = {Klemm, Juliane and Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna}, title = {Vegetation, climate and lake changes over the last 7000 years at the boreal treeline in north-central Siberia}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {147}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2015.08.015}, pages = {422 -- 434}, year = {2016}, language = {en} } @article{ZibulskiHerzschuhPestryakova2016, author = {Zibulski, Romy and Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna}, title = {Vegetation patterns along micro-relief and vegetation type transects in polygonal landscapes of the Siberian Arctic}, series = {Journal of vegetation science}, volume = {27}, journal = {Journal of vegetation science}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1100-9233}, doi = {10.1111/jvs.12356}, pages = {377 -- 386}, year = {2016}, abstract = {QuestionHow important is the effect of micro-relief and vegetation type on the characteristics of vascular plants and bryophytes in low-centred polygons? LocationSiberian Arctic, Russia. MethodsEight low-centred polygons in northern Siberia were surveyed for vegetation along transects running from the rim to the pond via the rim-pond transition of each polygon and across a vegetation type gradient from open forest to tundra. ResultsThe cover of vascular plants and bryophytes displays no significant differences between the rim and rim-pond transition but is significantly lower in the pond section of the polygons. Alpha-diversity of vascular plants decreases strongly from rim to pond, whereas bryophyte diversity in pond plots is significantly distinct from the rim and the rim-pond transition. There is no clear trend in cover for either plant group along the vegetation type transect and only a weak trend in -diversity. However, both gradients are reflected in the compositional turnover. The applied indicator species analysis identified taxa characteristic of certain environmental conditions. Among others, we found vascular plants primarily characteristic of the rim and bryophyte taxa characteristic of each micro-relief level and vegetation type. ConclusionsThe observed gradual pattern in -diversity and composition of polygonal vegetation suggests that micro-relief is the main driver of changes in the vegetation composition, while vegetation type and the related forest cover change are of subordinate importance for polygonal vegetation patterns along the Siberian tree line.}, language = {en} } @article{CourtinAndreevRaschkeetal.2021, author = {Courtin, J{\´e}r{\´e}my and Andreev, Andrei and Raschke, Elena and Bala, Sarah and Biskaborn, Boris and Liu, Sisi and Zimmermann, Heike and Diekmann, Bernhard and Stoof-Leichsenring, Kathleen R. and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Vegetation changes in Southeastern Siberia during the late pleistocene and the holocene}, series = {Frontiers in Ecology and Evolution}, volume = {9}, journal = {Frontiers in Ecology and Evolution}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2296-701X}, doi = {10.3389/fevo.2021.625096}, pages = {18}, year = {2021}, abstract = {Relationships between climate, species composition, and species richness are of particular importance for understanding how boreal ecosystems will respond to ongoing climate change. This study aims to reconstruct changes in terrestrial vegetation composition and taxa richness during the glacial Late Pleistocene and the interglacial Holocene in the sparsely studied southeastern Yakutia (Siberia) by using pollen and sedimentary ancient DNA (sedaDNA) records. Pollen and sedaDNA metabarcoding data using the trnL g and h markers were obtained from a sediment core from Lake Bolshoe Toko. Both proxies were used to reconstruct the vegetation composition, while metabarcoding data were also used to investigate changes in plant taxa richness. The combination of pollen and sedaDNA approaches allows a robust estimation of regional and local past terrestrial vegetation composition around Bolshoe Toko during the last similar to 35,000 years. Both proxies suggest that during the Late Pleistocene, southeastern Siberia was covered by open steppe-tundra dominated by graminoids and forbs with patches of shrubs, confirming that steppe-tundra extended far south in Siberia. Both proxies show disturbance at the transition between the Late Pleistocene and the Holocene suggesting a period with scarce vegetation, changes in the hydrochemical conditions in the lake, and in sedimentation rates. Both proxies document drastic changes in vegetation composition in the early Holocene with an increased number of trees and shrubs and the appearance of new tree taxa in the lake's vicinity. The sedaDNA method suggests that the Late Pleistocene steppe-tundra vegetation supported a higher number of terrestrial plant taxa than the forested Holocene. This could be explained, for example, by the "keystone herbivore" hypothesis, which suggests that Late Pleistocene megaherbivores were able to maintain a high plant diversity. This is discussed in the light of the data with the broadly accepted species-area hypothesis as steppe-tundra covered such an extensive area during the Late Pleistocene.}, language = {en} } @article{NiemeyerHerzschuhPestryakova2015, author = {Niemeyer, Bastian and Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna}, title = {Vegetation and lake changes on the southern Taymyr peninsula, northern Siberia, during the last 300 years inferred from pollen and Pediastrum green algae records}, series = {The Holocene : an interdisciplinary journal focusing on recent environmental change}, volume = {25}, journal = {The Holocene : an interdisciplinary journal focusing on recent environmental change}, number = {4}, publisher = {Sage Publ.}, address = {London}, issn = {0959-6836}, doi = {10.1177/0959683614565954}, pages = {596 -- 606}, year = {2015}, abstract = {Siberian arctic vegetation and lake water communities, known for their temperature dependence, are expected to be particularly impacted by recent climate change and high warming rates. However, decadal information on the nature and strength of recent vegetation change and its time lag to climate signals are rare. In this study, we present a Pb-210/Cs-137 dated pollen and Pediastrum species record from a unnamed lake in the south of the Taymyr peninsula covering the period from AD 1706 to 2011. Thirty-nine palynomorphs and 10 morphotypes of Pediastrum species were studied to assess changes in vegetation and lake conditions as probable responses to climate change. We compared the pollen record with Pediastrum species, which we consider to be important proxies of climate changes. Three pollen assemblage zones characterised by Betula nana, Alnus viridis and Larix gmelinii (1706-1808); herbs such as Cyperaceae, Artemisia or Senecio (1808-1879), and higher abundance of Larix pollen (1955-2011) are visible. Also, three Pediastrum assemblage zones show changes of aquatic conditions: higher abundances of Pediastrum boryanum var. brevicorne (1706-1802); medium abundances of P. kawraiskyi and P. integrum (1802-1840 and 1920-1980), indicating cooler conditions while less eutrophic conditions are indicated by P. boryanum, and a mainly balanced composition with only small changes of cold- and warm-adapted Pediastrum species (1965-2011). In general, compositional Pediastrum species turnover is slightly higher than that indicated by pollen data (0.54 vs 0.34 SD), but both are only minor for this treeline location. In conclusion, the relevance of differentiation of Pediastrum species is promising and can give further insights into the relationship between lakes and their surrounding vegetation transferred onto climatic conditions.}, language = {en} } @article{PestryakovaHerzschuhGorodnichevetal.2018, author = {Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike and Gorodnichev, Ruslan and Wetterich, Sebastian}, title = {The sensitivity of diatom taxa from Yakutian lakes (north-eastern Siberia) to electrical conductivity and other environmental variables}, series = {Polar research : a Norwegian journal of Polar research}, volume = {37}, journal = {Polar research : a Norwegian journal of Polar research}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0800-0395}, doi = {10.1080/17518369.2018.1485625}, pages = {16}, year = {2018}, abstract = {Relative abundances of 157 diatom taxa from Yakutian lake surface-sediments were investigated for their potential to indicate certain environmental conditions. Data from 206 sites from Arctic, sub-Arctic and boreal environments were included. Redundancy analyses were performed to assess the explanatory power of mean July temperature (T-July), conductivity, pH, dissolved silica concentration, phosphate concentration, lake depth and vegetation type on diatom species composition. Boosted regression tree analyses were performed to infer the most relevant environmental variables for abundances of individual taxa and weighted average regression was applied to infer their respective optimum and tolerance. Electrical conductivity was best indicated by diatom taxa. In contrast, only few taxa were indicative of Si and water depth. Few taxa were related to specific pH values. Although T-July, explained the highest proportion of variance in the diatom spectra and was, after conductivity, the second-most selected splitting variable, we a priori decided not to present indicator taxa because of the poorly understood relationship between diatom occurrences and T-July. In total, 92 diatom taxa were reliable indicators of a certain vegetation type or a combination of several types. The high numbers of indicative species for open vegetation sites and for forested sites suggest that the principal turnover is the transition from forest-tundra to northern taiga. Overall, our results reveal that preference ranges of diatom taxa for environmental variables are mostly broad, and the use of indicator taxa for the purposes of environmental reconstruction or environmental monitoring is therefore restricted to marked rather than subtle environmental transitions.}, language = {en} } @article{EppKruseKathetal.2018, author = {Epp, Laura Saskia and Kruse, Stefan and Kath, Nadja J. and Stoof-Leichsenring, Kathleen Rosemarie and Tiedemann, Ralph and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling}, series = {Scientific reports}, volume = {8}, journal = {Scientific reports}, publisher = {Nature Publ. Group}, address = {London}, issn = {2045-2322}, doi = {10.1038/s41598-018-35550-w}, pages = {9}, year = {2018}, abstract = {Changes in species' distributions are classically projected based on their climate envelopes. For Siberian forests, which have a tremendous significance for vegetation-climate feedbacks, this implies future shifts of each of the forest-forming larch (Larix) species to the north-east. However, in addition to abiotic factors, reliable projections must assess the role of historical biogeography and biotic interactions. Here, we use sedimentary ancient DNA and individual-based modelling to investigate the distribution of larch species and mitochondrial haplotypes through space and time across the treeline ecotone on the southern Taymyr peninsula, which at the same time presents a boundary area of two larch species. We find spatial and temporal patterns, which suggest that forest density is the most influential driver determining the precise distribution of species and mitochondrial haplotypes. This suggests a strong influence of competition on the species' range shifts. These findings imply possible climate change outcomes that are directly opposed to projections based purely on climate envelopes. Investigations of such fine-scale processes of biodiversity change through time are possible using paleoenvironmental DNA, which is available much more readily than visible fossils and can provide information at a level of resolution that is not reached in classical palaeoecology.}, language = {en} } @article{FrolovaNazarovaPestryakovaetal.2014, author = {Frolova, Larisa and Nazarova, Larisa B. and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Subfossil Cladocera from surface sediment in thermokarst lakes in northeastern Siberia, Russia, in relation to limnological and climatic variables}, series = {Journal of paleolimnolog}, volume = {52}, journal = {Journal of paleolimnolog}, number = {1-2}, publisher = {Springer}, address = {Dordrecht}, issn = {0921-2728}, doi = {10.1007/s10933-014-9781-7}, pages = {107 -- 119}, year = {2014}, abstract = {Subfossil Cladocera were sampled and examined from the surface sediments of 35 thermokarst lakes along a temperature gradient crossing the tree line in the Anabar-river basin in northwestern Yakutia, northeastern Siberia. The lakes were distributed through three environmental zones: typical tundra, southern tundra and forest tundra. All lakes were situated within the continuous permafrost zone. Our investigation showed that the cladoceran communities in the lakes of the Anabar region are diverse and abundant, as reflected by taxonomic richness, and high diversity and evenness indices (H = 1.89 +/- A 0.51; I = 0.8 +/- A 0.18). CONISS cluster analysis indicated that the cladoceran communities in the three ecological zones (typical tundra, southern tundra and forest-tundra) differed in their taxonomic composition and structure. Differences in the cladoceran assemblages were related to limnological features and geographical position, vegetation type, climate and water chemistry. The constrained redundancy analysis indicated that T-July, water depth and both sulphate (SO4 (2-)) and silica (Si4+) concentrations significantly (p a parts per thousand currency sign 0.05) explained variance in the cladoceran assemblage. T-July featured the highest percentage (17.4 \%) of explained variance in the distribution of subfossil Cladocera. One of the most significant changes in the structure of the cladoceran communities in the investigated transect was the replacement of closely related species along the latitudinal and vegetation gradient. The results demonstrate the potential for a regional cladoceran-based temperature model for the Arctic regions of Russia, and for and Yakutia in particular.}, language = {en} } @article{BiskabornNazarovaPestryakovaetal.2019, author = {Biskaborn, Boris and Nazarova, Larisa B. and Pestryakova, Luidmila Agafyevna and Syrykh, Liudmila and Funck, Kim and Meyer, Hanno and Chapligin, Bernhard and Vyse, Stuart Andrew and Gorodnichev, Ruslan and Zakharov, Evgenii and Wang, Rong and Schwamborn, Georg and Bailey, Hannah L. and Diekmann, Bernhard}, title = {Spatial distribution of environmental indicators in surface sediments of Lake Bolshoe Toko, Yakutia, Russia}, series = {Biogeosciences}, volume = {16}, journal = {Biogeosciences}, number = {20}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-16-4023-2019}, pages = {4023 -- 4049}, year = {2019}, abstract = {Rapidly changing climate in the Northern Hemisphere and associated socio-economic impacts require reliable understanding of lake systems as important freshwater resources and sensitive sentinels of environmental change. To better understand time-series data in lake sediment cores, it is necessary to gain information on within-lake spatial variabilities of environmental indicator data. Therefore, we retrieved a set of 38 samples from the sediment surface along spatial habitat gradients in the boreal, deep, and yet pristine Lake Bolshoe Toko in southern Yakutia, Russia. Our methods comprise laboratory analyses of the sediments for multiple proxy parameters, including diatom and chironomid taxonomy, oxygen isotopes from diatom silica, grain-size distributions, elemental compositions (XRF), organic carbon content, and mineralogy (XRD). We analysed the lake water for cations, anions, and isotopes. Our results show that the diatom assemblages are strongly influenced by water depth and dominated by planktonic species, i.e. Pliocaenicus bolshetokoensis. Species richness and diversity are higher in the northern part of the lake basin, associated with the availability of benthic, i.e. periphytic, niches in shallower waters. delta O-18(diatom) values are higher in the deeper south-western part of the lake, probably related to water temperature differences. The highest amount of the chironomid taxa underrepresented in the training set used for palaeoclimate inference was found close to the Utuk River and at southern littoral and profundal sites. Abiotic sediment components are not symmetrically distributed in the lake basin, but vary along restricted areas of differential environmental forcing. Grain size and organic matter are mainly controlled by both river input and water depth. Mineral (XRD) data distributions are influenced by the methamorphic lithology of the Stanovoy mountain range, while elements (XRF) are intermingled due to catchment and diagenetic differences. We conclude that the lake represents a valuable archive for multiproxy environmental reconstruction based on diatoms (including oxygen isotopes), chironomids, and sediment-geochemical parameters. Our analyses suggest multiple coring locations preferably at intermediate depth in the northern basin and the deep part in the central basin, to account for representative bioindicator distributions and higher temporal resolution, respectively.}, language = {en} } @article{vanGeffenHeimBriegeretal.2022, author = {van Geffen, Femke and Heim, Birgit and Brieger, Frederic and Geng, Rongwei and Shevtsova, Iuliia and Schulte, Luise and Stuenzi, Simone M. and Bernhardt, Nadine and Troeva, Elena I. and Pestryakova, Luidmila Agafyevna and Zakharov, Evgenii S. and Pflug, Bringfried and Herzschuh, Ulrike and Kruse, Stefan}, title = {SiDroForest: a comprehensive forest inventory of Siberian boreal forest investigations including drone-based point clouds, individually labeled trees, synthetically generated tree crowns, and Sentinel-2 labeled image patches}, series = {Earth system science data}, volume = {14}, journal = {Earth system science data}, number = {11}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1866-3508}, doi = {10.5194/essd-14-4967-2022}, pages = {4967 -- 4994}, year = {2022}, abstract = {The SiDroForest (Siberian drone-mapped forest inventory) data collection is an attempt to remedy the scarcity of forest structure data in the circumboreal region by providing adjusted and labeled tree-level and vegetation plot-level data for machine learning and upscaling purposes. We present datasets of vegetation composition and tree and plot level forest structure for two important vegetation transition zones in Siberia, Russia; the summergreen-evergreen transition zone in Central Yakutia and the tundra-taiga transition zone in Chukotka (NE Siberia). The SiDroForest data collection consists of four datasets that contain different complementary data types that together support in-depth analyses from different perspectives of Siberian Forest plot data for multi-purpose applications. i. Dataset 1 provides unmanned aerial vehicle (UAV)-borne data products covering the vegetation plots surveyed during fieldwork (Kruse et al., 2021, ). The dataset includes structure-from-motion (SfM) point clouds and red-green-blue (RGB) and red-green-near-infrared (RGN) orthomosaics. From the orthomosaics, point-cloud products were created such as the digital elevation model (DEM), canopy height model (CHM), digital surface model (DSM) and the digital terrain model (DTM). The point-cloud products provide information on the three-dimensional (3D) structure of the forest at each plot. Dataset 2 contains spatial data in the form of point and polygon shapefiles of 872 individually labeled trees and shrubs that were recorded during fieldwork at the same vegetation plots (van Geffen et al., 2021c, ). The dataset contains information on tree height, crown diameter, and species type. These tree and shrub individually labeled point and polygon shapefiles were generated on top of the RGB UVA orthoimages. The individual tree information collected during the expedition such as tree height, crown diameter, and vitality are provided in table format. This dataset can be used to link individual information on trees to the location of the specific tree in the SfM point clouds, providing for example, opportunity to validate the extracted tree height from the first dataset. The dataset provides unique insights into the current state of individual trees and shrubs and allows for monitoring the effects of climate change on these individuals in the future. Dataset 3 contains a synthesis of 10 000 generated images and masks that have the tree crowns of two species of larch ( and ) automatically extracted from the RGB UAV images in the common objects in context (COCO) format (van Geffen et al., 2021a, ). As machine-learning algorithms need a large dataset to train on, the synthetic dataset was specifically created to be used for machine-learning algorithms to detect Siberian larch species. Larix gmeliniiLarix cajanderiDataset 4 contains Sentinel-2 (S-2) Level-2 bottom-of-atmosphere processed labeled image patches with seasonal information and annotated vegetation categories covering the vegetation plots (van Geffen et al., 2021b, ). The dataset is created with the aim of providing a small ready-to-use validation and training dataset to be used in various vegetation-related machine-learning tasks. It enhances the data collection as it allows classification of a larger area with the provided vegetation classes. The SiDroForest data collection serves a variety of user communities.
The detailed vegetation cover and structure information in the first two datasets are of use for ecological applications, on one hand for summergreen and evergreen needle-leaf forests and also for tundra-taiga ecotones. Datasets 1 and 2 further support the generation and validation of land cover remote-sensing products in radar and optical remote sensing. In addition to providing information on forest structure and vegetation composition of the vegetation plots, the third and fourth datasets are prepared as training and validation data for machine-learning purposes. For example, the synthetic tree-crown dataset is generated from the raw UAV images and optimized to be used in neural networks. Furthermore, the fourth SiDroForest dataset contains S-2 labeled image patches processed to a high standard that provide training data on vegetation class categories for machine-learning classification with JavaScript Object Notation (JSON) labels provided. The SiDroForest data collection adds unique insights into remote hard-to-reach circumboreal forest regions.}, language = {en} } @article{HerzschuhPestryakovaSavelievaetal.2013, author = {Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna and Savelieva, Larissa A. and Heinecke, Liv and B{\"o}hmer, Thomas and Biskaborn, Boris and Andreev, Andrei and Ramisch, Arne and Shinneman, Avery L. C. and Birks, H. John B.}, title = {Siberian larch forests and the ion content of thaw lakes form a geochemically functional entity}, series = {Nature Communications}, volume = {4}, journal = {Nature Communications}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/ncomms3408}, pages = {8}, year = {2013}, abstract = {Siberian larch forests growing on shallow permafrost soils have not, until now, been considered to be controlling the abiotic and biotic characteristics of the vast number of thaw-lake ecosystems. Here we show, using four independent data sets (a modern data set from 201 lakes from the tundra to taiga, and three lake-core records), that lake-water geochemistry in Yakutia is highly correlated with vegetation. Alkalinity increases with catchment forest density. We postulate that in this arid area, higher evapotranspiration in larch forests compared with that in the tundra vegetation leads to local salt accumulation in soils. Solutes are transported to nearby thaw lakes during rain events and snow melt, but are not fully transported into rivers, because there is no continuous groundwater flow within permafrost soils. This implies that potentially large shifts in the chemical characteristics of aquatic ecosystems to known warming are absent because of the slow response of catchment forests to climate change.}, language = {en} } @article{ZibulskiHerzschuhPestryakovaetal.2013, author = {Zibulski, Romy and Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna and Wolter, Juliane and Mueller, S. and Schilling, N. and Wetterich, Sebastian and Schirrmeister, Lutz and Tian, Fang}, title = {River flooding as a driver of polygon dynamics: modern vegetation data and a millennial peat record from the Anabar River lowlands (Arctic Siberia)}, series = {Biogeosciences}, volume = {10}, journal = {Biogeosciences}, number = {8}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-10-5703-2013}, pages = {5703 -- 5728}, year = {2013}, abstract = {The spatial and temporal variability of a low-centred polygon on the eastern floodplain area of the lower Anabar River (72.070 degrees N, 113.921 degrees E; northern Yakutia, Siberia) has been investigated using a multi-method approach. The present-day vegetation in each square metre was analysed, revealing a community of Larix, shrubby Betula, and Salix on the polygon rim, a dominance of Carex and Andromeda polifolia in the rim-to-pond transition zone, and a predominantly monospecific Scorpidium scorpioides coverage within the pond. The total organic carbon (TOC) content, TOC/TN (total nitrogen) ratio, grain size, vascular plant macrofossils, moss remains, diatoms, and pollen were analysed for two vertical sections and a sediment core from a transect across the polygon. Radiocarbon dating indicates that the formation of the polygon started at least 1500 yr ago; the general positions of the pond and rim have not changed since that time. Two types of pond vegetation were identified, indicating two contrasting development stages of the polygon. The first was a well-established moss association, dominated by submerged or floating Scorpidium scorpioides and/or Drepanocladus spp. and overgrown by epiphytic diatoms such as Tabellaria flocculosa and Eunotia taxa. This stage coincides temporally with a period in which the polygon was only drained by lateral subsurface water flow, as indicated by mixed grain sizes. A different moss association occurred during times of repeated river flooding (indicated by homogeneous medium-grained sand that probably accumulated during the annual spring snowmelt), characterized by an abundance of Meesia triquetra and a dominance of benthic diatoms (e. g. Navicula vulpina), indicative of a relatively high pH and a high tolerance of disturbance. A comparison of the local polygon vegetation (inferred from moss and macrofossil spectra) with the regional vegetation (inferred from pollen spectra) indicated that the moss association with Scorpidium scorpioides became established during relatively favourable climatic conditions, while the association dominated by Meesia triquetra occurred during periods of harsh climatic conditions. Our study revealed a strong riverine influence (in addition to climatic influences) on polygon development and the type of peat accumulated.}, language = {en} } @article{NiemeyerKlemmPestryakovaetal.2015, author = {Niemeyer, Bastian and Klemm, Juliane and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Relative pollen productivity estimates for common taxa of the northern Siberian Arctic}, series = {Review of palaeobotany and palynology : an international journal}, volume = {221}, journal = {Review of palaeobotany and palynology : an international journal}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0034-6667}, doi = {10.1016/j.revpalbo.2015.06.008}, pages = {71 -- 82}, year = {2015}, abstract = {Pollen productivity estimates (PPE) are used to quantitatively reconstruct variations in vegetation within a specific distance of the sampled pollen archive. Here, for the first time, PPEs from Siberia are presented. The study area (Khatanga region, Krasnoyarsk territory, Russia) is located in the Siberian Sub-arctic where Larix is the sole forest-line forming tree taxon. Pollen spectra from two different sedimentary environments, namely terrestrial mosses (n = 16) and lakes (n = 15, median radius similar to 100 m) and their surrounding vegetation were investigated to extract PPEs. Our results indicate some differences in pollen spectra between moss and lake pollen. Larix and Cyperaceae for example obtained higher representation in the lacustrine than in terrestrial moss samples. This highlights that in calibration studies, modem and fossil datasets should use archives of similar sedimentary origin. Results of an Extended R-Value model were applied to assess the relevant source area of pollen (RSAP) and to calculate the PPEs for both datasets. As expected, the RSAP of the moss samples was very small (about 10 m) compared to the lacustrine samples (about 25 km). Calculation of PPEs for the six most common taxa yielded generally similar results for both datasets. Relative to Poaceae (reference taxon, PPE = 1) Betula nana-type (PPEmoss: 1.8, PPElake: 1.8) and Alnus fruticosa-type (PPEmoss:6.4, PPElake:2.9) were overrepresented while Cyperaceae (PPEmoss:0.5, PPElake:0.1), Ericaceae (PPEmoss: 0.3, PPElake <0.01), Salix (PPEmoss:0.03, PPElake <00.1) and Larix (PPEmoss: <0.01, PPElake:0.2) were under-represented in the pollen spectra compared to the vegetation in the RSAP. The estimation for the dominant tree in the region, Larix gmelinii, is the first published result for this species, but needs to be considered very preliminary. The inferred sequence from over- to under-representation is mostly consistent with results from Europe; however, the absolute values show some differences. Gathering vegetation data was limited by the remoteness of our study area and a lack of high-resolute satellite imagery and vegetation maps. Our estimate may serve as a first reference to strengthen future vegetation reconstructions in this climate-sensitive region. (C) 2015 Elsevier B.V. All rights reserved.}, language = {en} } @article{PestryakovaHerzschuhWetterichetal.2012, author = {Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike and Wetterich, Sebastian and Ulrich, Mathias}, title = {Present-day variability and Holocene dynamics of permafrost-affected lakes in central Yakutia (Eastern Siberia) inferred from diatom records}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {51}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2012.06.020}, pages = {56 -- 70}, year = {2012}, abstract = {Thermokarst lakes are assumed to develop cyclically, driven by processes that are triggered by climate and maintained by internal feedbacks that may trigger lake drainage. However, the duration of these cycles remains uncertain, as well as whether or not they affect the stabilization of lake ecosystems in permafrost regions over millennial time scales. Our research has combined investigations into modern lake-to-lake variability with a study of the long-term development of individual lakes. We have investigated the physico-chemical and diatom compositions of a set of 101 lakes with a variety of different origins in central Yakutia (Eastern Siberia), including thermokarst lakes, fluvial-erosion thermokarst lakes, fluvial-erosion lakes, and dune lakes. We found a significant relationship between lake genesis and the present-day variability in environmental and diatom characteristics, as revealed by multi-response permutation procedures, indicator species analyses, and redundancy analyses. Environmental parameters also exhibit a significant correlation with variations in the diatom data, for which they may have been to a substantial extent responsible. Mg and SO4 concentrations, together with pH and water depth, were identified as the most important parameters, influencing the variations in the diatom data almost as much as the entire environmental parameter set. We were therefore able to establish a robust Mg-diatom transfer function, which was then applied to three Holocene lake records. From these reconstructions, together with a general interpretation of the diatom record (including, e.g., the ratio between benthic/epiphytic and planktonic taxa), we have been able to infer that all three of these lakes show (1) a continuous record with no desiccation events, (2) high lake water-levels during the early Holocene, (3) centennial to millennial scale variability, and (4) high levels of variability during the early Holocene but rather stable conditions during the late Holocene (a feature that is also known from other sites around the world). We therefore concluded that the development of these three lakes was mainly driven directly by the climate, rather than by thaw lake cycling.}, language = {en} } @article{StoofLeichsenringPestryakovaEppetal.2020, author = {Stoof-Leichsenring, Kathleen Rosemarie and Pestryakova, Luidmila Agafyevna and Epp, Laura Saskia and Herzschuh, Ulrike}, title = {Phylogenetic diversity and environment form assembly rules for Arctic diatom genera}, series = {Journal of Biogeography}, volume = {47}, journal = {Journal of Biogeography}, number = {5}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {0305-0270}, doi = {10.1111/jbi.13786}, pages = {1166 -- 1179}, year = {2020}, abstract = {Aim This study investigates taxonomic and phylogenetic diversity in diatom genera to evaluate assembly rules for eukaryotic microbes across the Siberian tree line. We first analysed how phylogenetic distance relates to taxonomic richness and turnover. Second, we used relatedness indices to evaluate if environmental filtering or competition influences the assemblies in space and through time. Third, we used distance-based ordination to test which environmental variables shape diatom turnover. Location Yakutia and Taymyria, Russia: we sampled 78 surface sediments and a sediment core, extending to 7,000 years before present, to capture the forest-tundra transition in space and time respectively. Taxon Arctic freshwater diatoms. Methods We applied metabarcoding to retrieve diatom diversity from surface and core sedimentary DNA. The taxonomic assignment binned sequence types (lineages) into genera and created taxonomic (abundance of lineages within different genera) and phylogenetic datasets (phylogenetic distances of lineages within different genera). Results Contrary to our expectations, we find a unimodal relationship between phylogenetic distance and richness in diatom genera. We discern a positive relationship between phylogenetic distance and taxonomic turnover in spatially and temporally distributed diatom genera. Furthermore, we reveal positive relatedness indices in diatom genera across the spatial environmental gradient and predominantly in time slices at a single location, with very few exceptions assuming effects of competition. Distance-based ordination of taxonomic and phylogenetic turnover indicates that lake environment variables, like HCO3- and water depth, largely explain diatom turnover. Main conclusion Phylogenetic and abiotic assembly rules are important in understanding the regional assembly of diatom genera across lakes in the Siberian tree line ecotone. Using a space-time approach we are able to exclude the influence of geography and elucidate that lake environmental variables primarily shape the assemblies. We conclude that some diatom genera have greater capabilities to adapt to environmental changes, whereas others will be putatively replaced or lost due to the displacement of the Arctic tundra biome under recent global warming.}, language = {en} } @article{vonHippelStoofLeichsenringSchulteetal.2022, author = {von Hippel, Barbara and Stoof-Leichsenring, Kathleen R. and Schulte, Luise and Seeber, Peter Andreas and Epp, Laura Saskia and Biskaborn, Boris and Diekmann, Bernhard and Melles, Martin and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Long-term funguseplant covariation from multi-site sedimentary ancient DNA metabarcoding}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {295}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2022.107758}, pages = {18}, year = {2022}, abstract = {Climate change has a major impact on arctic and boreal terrestrial ecosystems as warming leads to northward treeline shifts, inducing consequences for heterotrophic organisms associated with the plant taxa. To unravel ecological dependencies, we address how long-term climatic changes have shaped the co-occurrence of plants and fungi across selected sites in Siberia. We investigated sedimentary ancient DNA from five lakes spanning the last 47,000 years, using the ITS1 marker for fungi and the chloroplast P6 loop marker for vegetation metabarcoding. We obtained 706 unique fungal operational taxonomic units (OTUs) and 243 taxa for the plants. We show higher OTU numbers in dry forest tundra as well as boreal forests compared to wet southern tundra. The most abundant fungal taxa in our dataset are Pseudeurotiaceae, Mortierella, Sordariomyceta, Exophiala, Oidiodendron, Protoventuria, Candida vartiovaarae, Pseudeurotium, Gryganskiella fimbricystis, and Tricho-sporiella cerebriformis. The overall fungal composition is explained by the plant composition as revealed by redundancy analysis. The fungal functional groups show antagonistic relationships in their climate susceptibility. The advance of woody taxa in response to past warming led to an increase in the abun-dance of mycorrhizae, lichens, and parasites, while yeast and saprotroph distribution declined. We also show co-occurrences between Salicaceae, Larix, and Alnus and their associated pathogens and detect higher mycorrhizal fungus diversity with the presence of Pinaceae. Under future warming, we can expect feedbacks between fungus composition and plant diversity changes which will affect forest advance, species diversity, and ecosystem stability in arctic regions.}, language = {en} } @article{KruseKolmogorovPestryakovaetal.2020, author = {Kruse, Stefan and Kolmogorov, Aleksey I. and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Long-lived larch clones may conserve adaptations that could restrict treeline migration in northern Siberia}, series = {Ecology and evolution}, volume = {10}, journal = {Ecology and evolution}, number = {18}, publisher = {Wiley}, address = {Hoboken}, issn = {2045-7758}, doi = {10.1002/ece3.6660}, pages = {10017 -- 10030}, year = {2020}, abstract = {The occurrence of refugia beyond the arctic treeline and genetic adaptation therein play a crucial role of largely unknown effect size. While refugia have potential for rapidly colonizing the tundra under global warming, the taxa may be maladapted to the new environmental conditions. Understanding the genetic composition and age of refugia is thus crucial for predicting any migration response. Here, we genotype 194 larch individuals from an similar to 1.8 km(2)area in northcentral Siberia on the southern Taimyr Peninsula by applying an assay of 16 nuclear microsatellite markers. For estimating the age of clonal individuals, we counted tree rings at sections along branches to establish a lateral growth rate that was then combined with geographic distance. Findings reveal that the predominant reproduction type is clonal (58.76\%) by short distance spreading of ramets. One outlier of clones 1 km apart could have been dispersed by reindeer. In clonal groups and within individuals, we find that somatic mutations accumulate with geographic distance. Clonal groups of two or more individuals are observed. Clonal age estimates regularly suggest individuals as old as 2,200 years, which coincides with a major environmental change that forced a treeline retreat in the region. We conclude that individuals with clonal growth mode were naturally selected as it lowers the likely risk of extinction under a harsh environment. We discuss this legacy from the past that might now be a maladaptation and hinder expansion under currently strongly increasing temperatures.}, language = {en} } @article{BiskabornSubettoSavelievaetal.2016, author = {Biskaborn, Boris and Subetto, D. A. and Savelieva, L. A. and Vakhrameeva, P. S. and Hansche, A. and Herzschuh, Ulrike and Klemm, J. and Heinecke, L. and Pestryakova, Luidmila Agafyevna and Meyer, H. and Kuhn, G. and Diekmann, Bernhard}, title = {Late Quaternary vegetation and lake system dynamics in north-eastern Siberia: Implications for seasonal climate variability}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {147}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2015.08.014}, pages = {406 -- 421}, year = {2016}, abstract = {Although the climate development over the Holocene in the Northern Hemisphere is well known, palaeolimnological climate reconstructions reveal spatiotemporal variability in northern Eurasia. Here we present a multi-proxy study from north-eastern Siberia combining sediment geochemistry, and diatom and pollen data from lake-sediment cores covering the last 38,000 cal. years. Our results show major changes in pyrite content and fragilarioid diatom species distributions, indicating prolonged seasonal lake-ice cover between similar to 13,500 and similar to 8900 cal. years BP and possibly during the 8200 cal. years BP cold event. A pollen-based climate reconstruction generated a mean July temperature of 17.8 degrees C during the Holocene Thermal Maximum (HTM) between similar to 8900 and similar to 4500 cal. years BP. Naviculoid diatoms appear in the late Holocene indicating a shortening of the seasonal ice cover that continues today. Our results reveal a strong correlation between the applied terrestrial and aquatic indicators and natural seasonal climate dynamics in the Holocene. Planktonic diatoms show a strong response to changes in the lake ecosystem due to recent climate warming in the Anthropocene. We assess other palaeolimnological studies to infer the spatiotemporal pattern of the HTM and affirm that the timing of its onset, a difference of up to 3000 years from north to south, can be well explained by climatic teleconnections. The westerlies brought cold air to this part of Siberia until the Laurentide ice sheet vanished 7000 years ago. The apparent delayed ending of the HTM in the central Siberian record can be ascribed to the exceedance of ecological thresholds trailing behind increases in winter temperatures and decreases in contrast in insolation between seasons during the mid to late Holocene as well as lacking differentiation between summer and winter trends in paleolimnological reconstructions. (C) 2015 Elsevier Ltd. All rights reserved.}, language = {en} } @article{AndreevRaschkeBiskabornetal.2021, author = {Andreev, Andrei and Raschke, Elena and Biskaborn, Boris and Vyse, Stuart Andrew and Courtin, J{\´e}r{\´e}my and B{\"o}hmer, Thomas and Stoof-Leichsenring, Kathleen R. and Kruse, Stefan and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Late Pleistocene to Holocene vegetation and climate changes in northwestern Chukotka (Far East Russia) deduced from lakes Ilirney and Rauchuagytgyn pollen records}, series = {Boreas : an international journal of quaternary research}, volume = {50}, journal = {Boreas : an international journal of quaternary research}, number = {3}, publisher = {Wiley-Blackwell}, address = {Oxford [u.a.]}, issn = {0300-9483}, doi = {10.1111/bor.12521}, pages = {652 -- 670}, year = {2021}, abstract = {This paper presents two new pollen records and quantitative climate reconstructions from northern Chukotka documenting environmental changes over the last 27.9 ka. Open tundra- and steppe-like habitats dominated between 27.9 and 18.7 cal. ka BP. Betula and Alnus shrubs might have grown in sheltered microhabitats but disappeared after 18.7 cal. ka BP. Although the climate was rather harsh, local herb-dominated communities supported herbivores as is evident by the presence of coprophilous spores in the sediments. The increase in Salix and Cyperaceae similar to 16.1 cal. ka BP suggests climate amelioration. Shrub Betula appeared similar to 15.9 cal. ka BP, and became dominant after similar to 15.52 cal. ka BP, whilst typical steppe communities drastically reduced. Very high presence of Botryococcus in the Lateglacial sediments reflects widespread shallow habitats, probably due to lake level increase. Shrub Alnus became common after similar to 13 cal. ka BP reflecting further climate amelioration. Simultaneously, herb communities gradually decreased in the vegetation reaching a minimum similar to 11.8 cal. ka BP. A gradual decrease of algae remains suggests a reduction of shallow-water habitats. Shrubby and graminoid tundra was dominant similar to 11.8-11.1 cal. ka BP, later Salix stands significantly decreased. The forest-tundra ecotone established in the Early Holocene, shortly after 11.1 cal. ka BP. Low contents of green algae in the Early Holocene sediments likely reflect deeper aquatic conditions. The most favourable climate conditions were between similar to 10.6 and 7 cal. ka BP. Vegetation became similar to the modern after similar to 7 cal. ka BP but Pinus pumila came to the Ilirney area at about 1.2 cal. ka BP. It is important to emphasize that the study area provided refugia for Betula and Alnus during MIS 2. It is also notable that our records do not reflect evidence of Younger Dryas cooling, which is inconsistent with some regional environmental records but in good accordance with some others.}, language = {en} } @article{SchirrmeisterBobrovRaschkeetal.2018, author = {Schirrmeister, Lutz and Bobrov, Anatoly and Raschke, Elena and Herzschuh, Ulrike and Strauss, Jens and Pestryakova, Luidmila Agafyevna and Wetterich, Sebastian}, title = {Late Holocene ice-wedge polygon dynamics in northeastern Siberian coastal lowlands}, series = {Arctic, antarctic, and alpine research : an interdisciplinary journal}, volume = {50}, journal = {Arctic, antarctic, and alpine research : an interdisciplinary journal}, number = {1}, publisher = {Institute of Arctic and Alpine Research, University of Colorado}, address = {Boulder}, issn = {1523-0430}, doi = {10.1080/15230430.2018.1462595}, pages = {18}, year = {2018}, abstract = {Ice-wedge polygons are common features of northeastern Siberian lowland periglacial tundra landscapes. To deduce the formation and alternation of ice-wedge polygons in the Kolyma Delta and in the Indigirka Lowland, we studied shallow cores, up to 1.3 m deep, from polygon center and rim locations. The formation of well-developed low-center polygons with elevated rims and wet centers is shown by the beginning of peat accumulation, increased organic matter contents, and changes in vegetation cover from Poaceae-, Alnus-, and Betula-dominated pollen spectra to dominating Cyperaceae and Botryoccocus presence, and Carex and Drepanocladus revolvens macro-fossils. Tecamoebae data support such a change from wetland to open-water conditions in polygon centers by changes from dominating eurybiontic and sphagnobiontic to hydrobiontic species assemblages. The peat accumulation indicates low-center polygon formation and started between 2380 +/- 30 and 1676 +/- 32 years before present (BP) in the Kolyma Delta. We recorded an opposite change from open-water to wetland conditions because of rim degradation and consecutive high-center polygon formation in the Indigirka Lowland between 2144 +/- 33 and 1632 +/- 32 years BP. The late Holocene records of polygon landscape development reveal changes in local hydrology and soil moisture.}, language = {en} }