@article{SchmidtKunzPetersen2012, author = {Schmidt, Bernd and Kunz, Oliver and Petersen, Monib H.}, title = {Total syntheses of naturally occurring seimatopolide a and its enantiomer from chiral pool starting materials using a bidirectional strategy}, series = {The journal of organic chemistry}, volume = {77}, journal = {The journal of organic chemistry}, number = {23}, publisher = {American Chemical Society}, address = {Washington}, issn = {0022-3263}, doi = {10.1021/jo302359h}, pages = {10897 -- 10906}, year = {2012}, abstract = {Enantioselective total syntheses of both enantiomers of the recently isolated decanolide natural product seimatopolide A are described. The C-2-symmetric building blocks (R,R)-hexa-1,5-diene-3,4-diol (derived from D-mannitol) and its enantiomer (derived from L-(+)-tartrate) serve as key starting materials, which are elaborated in a bidirectional way using a selective mono-cross-metathesis, regio- and stereoselective epoxidation, and regioselective reductive epoxide opening to furnish the first fragment. Both enantiomers of the second fragment, 3-hydroxypent-4-enoic acid, were conveniently obtained through a lipase-catalyzed kinetic resolution and merged with the first fragment via Shiina esterification. An E-selective ring-closing metathesis was used to access the 10-membered lactone. A comparison of the specific optical rotations of synthetic seimatopolides with those reported for the natural product suggests that the originally assigned (3R,6R,7R,9S)-configuration should be corrected to (3S,6S,7S,9R).}, language = {en} } @article{BaranacStojanovicKochKleinpeter2012, author = {Baranac-Stojanovic, Marija and Koch, Andreas and Kleinpeter, Erich}, title = {Density Functional Calculations of the Anisotropic Effects of Borazine and 1,3,2,4-Diazadiboretidine}, series = {ChemPhysChem : a European journal of chemical physics and physical chemistry}, volume = {13}, journal = {ChemPhysChem : a European journal of chemical physics and physical chemistry}, number = {17}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1439-4235}, doi = {10.1002/cphc.201200732}, pages = {3803 -- 3811}, year = {2012}, abstract = {On the basis of the nucleus-independent chemical shift (NICS) concept, the anisotropic effects of two inorganic rings, namely, borazine and planar 1,3,2,4-diazadiboretidine, are quantitatively calculated and visualized as isochemical shielding surfaces (ICSSs). Dissection of magnetic shielding values along the three Cartesian axes into contributions from s and p bonds by the natural chemical shieldingnatural bond orbital (NCSNBO) method revealed that their appearance is not a simple reflection of the extent of (anti)aromaticity.}, language = {en} } @article{FlossGranucciSaalfrank2012, author = {Floss, Gereon and Granucci, Giovanni and Saalfrank, Peter}, title = {Surface hopping dynamics of direct trans -> cis photoswitching of an azobenzene derivative in constrained adsorbate geometries}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {137}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {23}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.4769087}, pages = {9}, year = {2012}, abstract = {With ongoing miniaturization of electronic devices, the need for individually addressable, switchable molecules arises. An example are azobenzenes on surfaces which have been shown to be switchable between trans and cis forms. Here, we examine the "direct" (rather than substrate-mediated) channel of the trans -> cis photoisomerization after pi pi* excitation of tetra-tert-butyl-azobenzene physisorbed on surfaces mimicking Au(111) and Bi(111), respectively. In spirit of the direct channel, the electronic structure of the surface is neglected, the latter merely acting as a rigid platform which weakly interacts with the molecule via Van-der-Waals forces. Starting from thermal ensembles which represent the trans-form, sudden excitations promote the molecules to pi pi*-excited states which are non-adiabatically coupled among themselves and to a n pi*-excited and the ground state, respectively. After excitation, relaxation to the ground state by internal conversion takes place, possibly accompanied by isomerization. The process is described here by "on the fly" semiclassical surface hopping dynamics in conjunction with a semiempirical Hamiltonian (AM1) and configuration-interaction type methods. It is found that steric constraints imposed by the substrate lead to reduced but non-vanishing, trans -> cis reaction yields and longer internal conversion times than for the isolated molecule. Implications for recent experiments for azobenzenes on surfaces are discussed.}, language = {en} } @article{WirthSaalfrank2012, author = {Wirth, Jonas and Saalfrank, Peter}, title = {The chemistry of water on alpha-alumina kinetics and nuclear quantum effects from first principles}, series = {The journal of physical chemistry : C, Nanomaterials and interfaces}, volume = {116}, journal = {The journal of physical chemistry : C, Nanomaterials and interfaces}, number = {51}, publisher = {American Chemical Society}, address = {Washington}, issn = {1932-7447}, doi = {10.1021/jp310234h}, pages = {26829 -- 26840}, year = {2012}, abstract = {Water adsorption on an alumina (alpha-Al2O3) surface is studied here from first principles using periodic density functional theory in the generalized gradient approximation. Two different coverage regimes, low and high, are considered. For the low-coverage regime (with a coverage of 1/4 with respect to the number of coordinatively unsaturated Al sites), possible reactions at the surface such as dissociation, rotation, and diffusion of water and its fragments are investigated, using first principles thermodynamics and kinetics. A microkinetic model is set up with rates calculated from Eyring's transition state theory in order to cover a wide range of time scales. Special emphasis of this study is on the magnitude of quantum effects and on anharmonic corrections, particularly for reactions and dynamics. These have often been neglected in the past for water/alumina systems but can influence the system. This is particularly true for processes involving hydrogen atoms, where, for example, tunneling corrections to reaction rates are found to be important even at room temperature. For a higher-coverage regime (with a coverage of 2 ML), hydrogen dynamics becomes even more complex and is characterized, e.g., by concerted atom motion, strong anharmonicity, and delocalization. In this regime, classical molecular dynamics becomes questionable as well as quantum mechanical treatments based on the harmonic approximation.}, language = {en} } @article{LazarevaAlbanovShainyanetal.2012, author = {Lazareva, Nataliya F. and Albanov, Alexander I. and Shainyan, Bagrat A. and Kleinpeter, Erich}, title = {Synthesis and conformational properties of substituted 1,4,2-oxazasilinanes: low temperature NMR study and quantum chemical calculations}, doi = {10.1016/j.tet.2011.11.077}, year = {2012}, language = {en} } @article{ShainyanSuslovaKleinpeter2012, author = {Shainyan, Bagrat A. and Suslova, Elena N. and Kleinpeter, Erich}, title = {Conformational analysis of 4,4-dimethyl-1-(trifluoromethylsulfonyl)-1,4-azasilinane and 2,2,6,6-tetramethyl-4- (trifluoromethylsulfonyl)-1,4,2,6-oxazadisilinane}, year = {2012}, abstract = {4,4-Dimethyl-1-(trifluoromethylsulfonyl)-1,4-azasilinane 1 and 2,2,6,6-tetramethyl-4-(trifluoromethylsulfonyl)- 1,4,2,6-oxazadisilinane 2 were studied by variable temperature dynamic 1H, 13C, 19F NMR spectroscopy and theoretical calculations at the DFT (density functional theory) and MP2 (Moller-Plesset 2) levels of theory. Both kinetic (barriers to ring inversion) and thermodynamic data (frozen conformational equilibria) could be obtained for the two compounds. The computations revealed two minima on the potential energy surface for molecules 1 and 2 corresponding to the rotamers with the CF3SO2 group directed inward and outward the ring, the latter being 0.20.4 kcal/mol (for 1) and 1.1 kcal/mol (for 2) more stable than the former. The vibrational calculations at the DFT and MP2 levels of theory give the values of the free energy difference Delta G degrees for the 'inward' reversible arrow 'outward' equilibrium consistent with those determined from the experimentally measured ratio of the rotamers. The structure of crystalline compound 2 was ascertained by X-ray diffraction analysis.}, language = {en} } @article{ShainyanKleinpeter2012, author = {Shainyan, Bagrat A. and Kleinpeter, Erich}, title = {Conformational preferences of Si-Ph,H and Si-Ph,Me silacyclohexanes and 1,3-thiasilacyclohexanes : Additivity of conformational energies in 1,1-disubstituted heterocyclohexanes}, issn = {0040-4020}, year = {2012}, abstract = {The conformational equilibria of 1-phenyl-1-silacyclohexane 1, 3-phenyl-1,3-thiasilacyclohexane 2, 1-methyl-1- phenyl-1-silacyclohexane 3, and 3-methyl-3-phenyl-1,3-thiasilacyclohexane 4 have been studied for the first time by low temperature C-13 NMR spectroscopy at 103 K. Predominance of the equatorial conformer of compound 1 (Ph-eq/Ph-ax=78\%:22\%) is much less than in its carbon analog, phenylcyclohexane (nearly 100\% of Ph-eq). And in contrast to 1-methyl-1- phenylcyclohexane, the conformers with the equatorial Ph group are predominant for compounds 3 and 4: at 103 K, Ph-eq/Ph- ax ratios are 63\%:37\% (3) and 68\%:32\% (4). As the Si-C bonds are elongated with respect to C-C bonds, the barriers to ring inversion are only between 5.2-6.0 (ax -> eq) and 5.4-6.0 (eq -> ax) kcal mol(-1). Parallel calculations at the DFT and MP2 level of theory (as well as the G2 calculations for compound 1) show qualitative agreement with the experiment. The additivity/nonadditivity of conformational energies of substituents on cyclohexane and silacyclohexane derivatives is analyzed. The geminally disubstituted cyclohexanes containing a phenyl group show large deviations from additivity, whereas in 1-methyl-1-phenyl-1-silacyclohexane and 3-methyl-3-phenyl-1,3-thiasilacyclohexane the effects of the methyl and phenyl groups are almost additive. The reasons for the different conformational preferences in carbocyclic and heterocyclic compounds are analyzed using the homodesmotic reactions approach.}, language = {en} } @article{KleinpeterKoch2012, author = {Kleinpeter, Erich and Koch, Andreas}, title = {Spatial magnetic properties subject to lone pair and pi electron delocalization in benzenoid and quinoid structures : are quinoid tautomers really nonaromatic?}, issn = {1551-7004}, year = {2012}, abstract = {The spatial magnetic properties, through-space NMR shieldings (TSNMRS), of benzenoid and quinoid tautomeric structures such as benzodifurantrione and phenazine-type molecules have been calculated using the GIAO perturbation method employing the nucleus independent chemical shift (NICS) concept of Paul von Rague Schleyer and visualized as iso- chemical-shielding surfaces (ICSS) of various size and direction. The TSNMRS values were employed to quantify and visualize the partial aromaticity of the studied compounds. In the case of the surprisingly more stable quinoid tautomers, the aromaticity-synonymous with stability due to the conjugation of p electrons and lone pairs-was not found to be particularly reduced.}, language = {en} } @article{KleinpeterHeydenreichKochetal.2012, author = {Kleinpeter, Erich and Heydenreich, Matthias and Koch, Andreas and Linker, Torsten}, title = {Synthesis and NMR spectroscopic conformational analysis of esters of 4-hydroxy-cyclohexanone-the more polar the molecule the more stable the axial conformer}, issn = {0040-4020}, year = {2012}, abstract = {The esters of 4-hydroxy-cyclohexanone and a series of carboxylic acids R-COOH with R of different electronic and steric influence (R=Me, Et, n-Pr, i-Pr, n-Bu, i-Bu, sec-Bu, t-Bu, CF3, CH2Cl, CHCl2, CCl3, CH2Br, CHBr2, and CBr3) were synthesized and the conformational equilibria studied by 1H and 13C NMR spectroscopy at 103 K and at 295 K, respectively. The geometry of optimized structures of the axial/equatorial chair conformers was computed at the ab initio MO and DFT levels of theory. Only one preferred conformation was obtained for the axial and the equatorial conformer as well. When comparing the conformational equilibria of the cyclohexanone esters with those of the corresponding cyclohexyl esters a certain polarity contribution of the cyclohexanone framework was revealed, which is independent of the substituent effects and increases the stability of the axial conformers by a constant amount.}, language = {en} } @article{KleinpeterShainyanKirpichenkoetal.2012, author = {Kleinpeter, Erich and Shainyan, Bagrat A. and Kirpichenko, Svetlana V. and Shlykov, Sergei A.}, title = {Structure and Conformational Properties of 1,3,3-Trimethyl-1,3-Azasilinane : Gas Electron Diffraction, Dynamic NMR, and Theoretical Study.}, issn = {1089-5639}, year = {2012}, language = {en} } @article{KleinpeterCsuetoertoekiSzatmarietal.2012, author = {Kleinpeter, Erich and Cs{\"u}t{\"o}rt{\"o}ki, Ren{\´a}ta and Szatm{\´a}ri, Istv{\´a}n and Koch, Andreas and Fulop, Ferenc}, title = {Syntheses and conformational analyses of new naphth[1,2-e][1,3]oxazino[3,2-c]quinazolin-13-ones}, year = {2012}, abstract = {The syntheses of naphth[1,2-e][1,3]oxazino[3,2-c]quinazolin-13-one derivatives (3a-f) were achieved by the solvent-free heating of benzyloxycarbonyl-protected intermediates (2a-f) with MeONa. For intermediates 2a-f, prepared by the reactions of substituted aminonaphthols with benzyl N-(2-formylphenyl)carbamate, not only the expected trans ring form B and chain form A1, but also the rearranged chain form A2 as a new tautomer were detected in DMSO at room temperature. The quantity of A2 in the tautomeric mixture was changed with time. Conformational analyses of the target heterocycles 3a-f by NMR spectroscopy and accompanying theoretical calculations at the DFT level of theory revealed that the oxazine ring preferred a twisted chair conformation and the quinazolone ring was planar. Besides the conformations, both the configurations at C-7a and C-15 and the preferred rotamers of the 1-naphthyl substituent at C-15 were assigned, which allowed evaluation of the aryl substituent-dependent steric hindrance in this part of the molecules. Configurational assignments were corroborated by quantifying the ring current effect of 15-aryl in terms of spatial NICS.}, language = {en} } @article{Kleinpeter2012, author = {Kleinpeter, Erich}, title = {Are lithium and sodium salts of N-(2-hydroxyphenyl)-salicylaldimine aromatic metalla-hetero[10]annulenes? An answer given by spatial magnetic properties (through space NMR shieldings-TSNMRS)}, issn = {1463-9076}, year = {2012}, abstract = {The spatial magnetic properties (through space NMR shieldings-TSNMRS) of the enol tautomer of N-(2- hydroxyphenyl)-salicylaldimine, the lithium and sodium salts in comparison with cyclodecapentaene and pyrano[2,3- b]pyrrole were studied to answer this question.}, language = {en} } @article{KleinpeterModarresiAlamInaloo2012, author = {Kleinpeter, Erich and Modarresi-Alam, Ali Reza and Inaloo, Iman Dindarloo}, title = {Synthesis of primary thiocarbamates by silica sulfuric acid as effective reagent under solid-state and solution conditions}, issn = {0022-2860}, year = {2012}, abstract = {A simple and efficient method for the conversion of alcohols and phenols to primary O-thiocarbamates and S- thiocarbamates in the absence of solvent (solvent-free condition) using silica sulfuric acid (SiO2OSO3H) as a solid acid is described. The products are easily distinguished by IR, NMR and X-ray data. X-ray data of the compounds reveal a planar trigonal orientation of the NH2 nitrogen atom with the partial C,N double-bond character and the CS or CO groups in synperiplanar position with CarylO and CalkylS moieties, respectively. Moreover, the OCSNH2 group which is perpendicular to the plane of the benzene ring in 1c and the central thiocarbamate SCONH2 group in 2b are essentially planar.}, language = {en} } @article{KleinpeterCsuetoertoekiSzatmarietal.2012, author = {Kleinpeter, Erich and Cs{\"u}t{\"o}rt{\"o}ki, Ren{\´a}ta and Szatm{\´a}ri, Istv{\´a}n and Heydenreich, Matthias and Koch, Andreas and Starke, Ines and Fulop, Ferenc}, title = {Novel piperidine-fused benzoxazino- and quinazolinonaphthoxazines-synthesis and conformational study}, issn = {0040-4020}, year = {2012}, abstract = {The reactions of 1-(amino(2-hydroxyphenyl)methyl)-2-naphthol (3) and 1-(amino(2-aminophenyl)methyl)-2-naphthol (6) with glutardialdehyde resulted in the formation of piperidine-fused benzoxazinonaphthoxazine 4 and quinazolinonaphthoxazine 7, respectively, both in diastereopure form. The full conformational search protocols of 4 and 7 were successfully carried out by NMR spectroscopy and accompanying molecular modelling; the global minimum-energy conformers of all diastereomers were computed, and the assignments of the most stable stereoisomers, Gtct1 for 4 and Gtct1 for 7, were corroborated by spatial NOE information relating to the H7a-H10a-H15b and H,H coupling patterns of the protons in the flexible part of the piperidine moiety. Additionally, mass spectrometric fragmentation was investigated in collision-induced dissociation experiments. The elemental compositions of the ions were determined by accurate mass measurements.}, language = {en} } @article{KleinpeterSchainyanKirpichenko2012, author = {Kleinpeter, Erich and Schainyan, Bagrat A. and Kirpichenko, Svetlane V.}, title = {Synthesis and conformational properties of 1,3-dimethyl-3-phenyl-1,3-azasilinane : low temperature dynamic NMR and computational study}, issn = {1551-7004}, year = {2012}, abstract = {1,3-Dimethyl-3-phenyl-1,3-azasilinane was synthesized and its conformational behavior was studied by the low temperature NMR spectroscopy and quantum chemical calculations. The compound was shown to exist as an equilibrium mixture of the PhaxMeeq and PheqMeax chair conformers with the N-methyl substituent in equatorial position. The barrier to ring inversion was also determined.}, language = {en} } @article{KleinpeterBalciYaparetal.2012, author = {Kleinpeter, Erich and Balci, Kubilay and Yapar, G. and Akkaya, S. and Akyuz, S. and Koch, Andreas}, title = {A conformational analysis and vibrational spectroscopic investigation on 1,2-bis(o-carboxyphenoxy) ethane molecule}, year = {2012}, abstract = {The minima on the potential energy surface of 1,2-bis(o-carboxyphenoxy) ethane (CPE) molecule in its electronic ground state were searched by a molecular dynamics simulation performed with MM2 force field. For each of the found minimum-energy conformers, the corresponding equilibrium geometry, charge distribution, HOMO-LUMO energy gap, force field, vibrational normal modes and associated IR and Raman spectral data were determined by means of the density functional theory (DFT) based electronic structure calculations carried out by using B3LYP method and various Pople- style basis sets. The obtained theoretical data confirmed the significant effects of the intra- and inter-molecular hydrogen bonding interactions on the conformational structure, force field, and group vibrations of the molecule. The same data have also revealed that two of the determined stable conformers, both of which exhibit pseudo-crown structure, are considerably more favorable in energy to the others and accordingly provide the major c ntribution to the experimental spectra of CPE. In the light of the improved vibrational spectral data obtained within the "SQM FF" methodology and "Dual Scale Factors" approach for the monomer and dimer forms of these two conformers, a reliable assignment of the fundamental bands observed in the experimental room-temperature IR and Raman spectra of the molecule was given, and the sensitivities of its group vibratb20s to conformation, substitution and dimerization were discussed.}, language = {en} } @article{KleinpeterBranacStojanoviKoch2012, author = {Kleinpeter, Erich and Branac-Stojanovi, Marija and Koch, Andreas}, title = {Is the Conventional Interpretation of the Anisotropic Effects of CC Double Bonds and Aromatic Rings in NMR Spectra in Terms of the -Electron Shielding/Deshielding Contributions Correct?}, issn = {1521-3765}, year = {2012}, abstract = {Based on the nucleus-independent chemical shift (NICS) concept, isotropic magnetic shielding values have been computed along the three Cartesian axes for ethene, cyclobutadiene, benzene, naphthalene, and benzocyclobutadiene, starting from the molecular/ring center up to 10;{\AA} away. These through-space NMR spectroscopic shielding (TSNMRS) values, which reflect the anisotropic effects, have been broken down into contributions from localized- and canonical molecular orbitals (LMOs and CMOs); these contributions revealed that the proton NMR spectroscopic chemical shifts of nuclei that are spatially close to the C=C double bond or the aromatic ring should not be explained in terms of the conventionally accepted ;-electron shielding/deshielding effects. In fact, these effects followed the predictions only for the antiaromatic cyclobutadiene ring.}, language = {en} } @article{KleinpeterLazarevaShainyanetal.2012, author = {Kleinpeter, Erich and Lazareva, Nataliya F. and Shainyan, Bagrat A. and Schilde, Uwe and Chipania, Nina N.}, title = {Synthesis, Molecular Structure, Conformational Analysis, and Chemical Properties of Silicon-Containing Derivatives of Quinolizidine}, issn = {0022-3263}, year = {2012}, language = {en} } @article{KleinpeterStojanovicMarkovicetal.2012, author = {Kleinpeter, Erich and Stojanovic, Milovan and Markovic, Rade and Baranac-Stojanovic, Marija}, title = {Synthesis of thiazolidine-fused heterocycles via exo-mode cyclizations of vinylogous N-acyliminium ions}, issn = {1477-0520}, year = {2012}, abstract = {Syntheses of thiazolidine-fused heterocycles via exo-mode cyclizations of vinylogous N-acyliminium ions incorporating heteroatom-based nucleophiles have been examined and discussed. The formation of (5,6)-membered systems was feasible with all nucleophiles tried (O, S and N), while the closing of the five-membered ring was restricted to O- and S-nucleophiles. The closure of a four-membered ring failed. Instead, the bicyclic (5,6)-membered acetal derivative and the tricyclic system with an eight-membered central ring were obtained from the substrates containing O and S nucleophilic moieties, respectively. The reaction outcome and stereochemistry are rationalized using quantum chemical calculations at B3LYP/6-31G(d) level. The exclusive cis-stereoselectivity in the formation of (5,6)- and (5,5)-membered systems results from thermodynamic control, whereas the formation of the eight-membered ring was kinetically controlled.}, language = {en} } @article{KleinpeterNeuvonenNeuvonenetal.2012, author = {Kleinpeter, Erich and Neuvonen, Kari and Neuvonen, Helmi and Koch, Andreas}, title = {Taft equation in the light of NBO computations : Introduction of a novel polar computational substituent constant scale for alkyl groups}, issn = {2210-271X}, year = {2012}, language = {en} }