@phdthesis{Kamprath2014, author = {Kamprath, Martin}, title = {A microfoundations perspectives on fresight and business models}, pages = {224}, year = {2014}, language = {en} } @phdthesis{Supaporn2014, author = {Supaporn, Worakrit}, title = {Categorical equivalence of clones}, pages = {89}, year = {2014}, language = {en} } @article{HaferKiyLucke2014, author = {Hafer, J{\"o}rg and Kiy, Alexander and Lucke, Ulrike}, title = {Moodle \& Co. auf dem Weg zur Personal Learning Environment}, series = {eleed}, volume = {2014}, journal = {eleed}, number = {10}, issn = {1860-7470}, year = {2014}, abstract = {Ausgehend von der typischen IT-Infrastruktur f{\"u}r E-Learning an Hochschulen auf der einen Seite sowie vom bisherigen Stand der Forschung zu Personal Learning Environments (PLEs) auf der anderen Seite zeigt dieser Beitrag auf, wie bestehende Werkzeuge bzw. Dienste zusammengef{\"u}hrt und f{\"u}r die Anforderungen der modernen, rechnergest{\"u}tzten Pr{\"a}senzlehre aufbereitet werden k{\"o}nnen. F{\"u}r diesen interdisziplin{\"a}ren Entwicklungsprozess bieten sowohl klassische Softwareentwicklungsverfahren als auch bestehende PLE-Modelle wenig Hilfestellung an. Der Beitrag beschreibt die in einem campusweiten Projekt an der Universit{\"a}t Potsdam verfolgten Ans{\"a}tze und die damit erzielten Ergebnisse. Daf{\"u}r werden zun{\"a}chst typische Lehr-/Lern-bzw. Kommunikations-Szenarien identifiziert, aus denen Anforderungen an eine unterst{\"u}tzende Plattform abgeleitet werden. Dies f{\"u}hrt zu einer umfassenden Sammlung zu ber{\"u}cksichtigender Dienste und deren Funktionen, die gem{\"a}ß den Spezifika ihrer Nutzung in ein Gesamtsystem zu integrieren sind. Auf dieser Basis werden grunds{\"a}tzliche Integrationsans{\"a}tze und technische Details dieses Mash-Ups in einer Gesamtschau aller relevanten Dienste betrachtet und in eine integrierende Systemarchitektur {\"u}berf{\"u}hrt. Deren konkrete Realisierung mit Hilfe der Portal-Technologie Liferay wird dargestellt, wobei die eingangs definierten Szenarien aufgegriffen und exemplarisch vorgestellt werden. Erg{\"a}nzende Anpassungen im Sinne einer personalisierbaren bzw. adaptiven Lern-(und Arbeits-)Umgebung werden ebenfalls unterst{\"u}tzt und kurz aufgezeigt.}, language = {en} } @article{BoggioBodenmuellerFrembergetal.2014, author = {Boggio, Jose M. Chavez and Bodenmueller, D. and Fremberg, T. and Haynes, R. and Roth, Martin M. and Eisermann, R. and Lisker, M. and Zimmermann, L. and Boehm, Michael}, title = {Dispersion engineered silicon nitride waveguides by geometrical and refractive-index optimization}, series = {Journal of the Optical Society of America : B, Optical physics}, volume = {31}, journal = {Journal of the Optical Society of America : B, Optical physics}, number = {11}, publisher = {Optical Society of America}, address = {Washington}, issn = {0740-3224}, doi = {10.1364/JOSAB.31.002846}, pages = {2846 -- 2857}, year = {2014}, abstract = {Dispersion engineering in silicon nitride (SiXNY) waveguides is investigated through the optimization of the waveguide transversal dimensions and refractive indices in a multicladding arrangement. Ultraflat dispersion of -84.0 +/- 0.5 ps/nm/km between 1700 and 2440 nm and 1.5 +/- 3 ps/nm/km between 1670 and 2500 nm is numerically demonstrated. It is shown that typical refractive index fluctuations as well as dimension fluctuations during fabrication of the SiXNY waveguides are a limitation for obtaining ultraflat dispersion profiles. Single- and multicladding waveguides are fabricated and their dispersion profiles measured (over nearly 1000 nm) using a low-coherence frequency domain interferometric technique. By appropriate thickness optimization, the zero-dispersion wavelength is tuned over a large spectral range in single-and multicladding waveguides with small refractive index contrast (3\%). A flat dispersion profile with +/- 3.2 ps/nm/km variation over 500 nm is obtained in a multicladding waveguide fabricated with a refractive index contrast of 37\%. Finally, we generate a nearly three-octave supercontinuum in this dispersion flattened multicladding SiXNY waveguide. (C) 2014 Optical Society of America}, language = {en} } @article{SchmaelzlinMoralejoRutowskaetal.2014, author = {Schmaelzlin, Elmar and Moralejo, Benito and Rutowska, Monika and Monreal-Ibero, Ana and Sandin, Christer and Tarcea, Nicolae and Popp, Juergen and Roth, Martin M.}, title = {Raman imaging with a fiber-coupled multichannel spectrograph}, series = {Sensors}, volume = {14}, journal = {Sensors}, number = {11}, publisher = {MDPI}, address = {Basel}, issn = {1424-8220}, doi = {10.3390/s141121968}, pages = {21968 -- 21980}, year = {2014}, abstract = {Until now, spatially resolved Raman Spectroscopy has required to scan a sample under investigation in a time-consuming step-by-step procedure. Here, we present a technique that allows the capture of an entire Raman image with only one single exposure. The Raman scattering arising from the sample was collected with a fiber-coupled high-performance astronomy spectrograph. The probe head consisting of an array of 20 x 20 multimode fibers was linked to the camera port of a microscope. To demonstrate the high potential of this new concept, Raman images of reference samples were recorded. Entire chemical maps were received without the need for a scanning procedure.}, language = {en} } @article{BeisheimLiese2014, author = {Beisheim, Marianne and Liese, Andrea Margit}, title = {Summing up : key findings and avenues for future research}, isbn = {978-1-137-35925-0}, year = {2014}, language = {en} } @book{HaferHenzeMattheetal.2014, author = {Hafer, J{\"o}rg and Henze, Luise and Matth{\´e}, Frederic and Schumann, Marlen}, title = {Bestandsaufnahme E-Learning an der Universit{\"a}t Potsdam}, number = {1}, issn = {2199-6520}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70670}, publisher = {Universit{\"a}t Potsdam}, pages = {33}, year = {2014}, abstract = {Der vorliegende Text gibt eine Bestandserhebung der bisher stattgefundenen Aktivit{\"a}ten im E-Learning an der Universit{\"a}t Potsdam wieder, andererseits dient er auch dazu, Potenziale zu sichten und in einem n{\"a}chstem Schritt daraus Ideen und Vorschl{\"a}ge f{\"u}r eine hochschulweite E-Learning-Strategie abzuleiten. Zielsetzung der Bestandsaufnahme ist es, die relevanten Informationen darzustellen, {\"u}ber den Platz der Universit{\"a}t Potsdam in der hochschulischen E-Learning-Landschaft zu orientieren und den Stand der Entwicklung zu bewerten.}, language = {de} } @phdthesis{Faber2014, author = {Faber, Eike}, title = {Von Ulfila bis Rekkared}, series = {Potsdamer altertumswissenschaftliche Beitr{\"a}ge ; Bd. 51}, journal = {Potsdamer altertumswissenschaftliche Beitr{\"a}ge ; Bd. 51}, publisher = {Steiner}, address = {Stuttgart}, isbn = {978-3-515-10929-1}, doi = {10.25162/9783515109291}, pages = {300}, year = {2014}, abstract = {F{\"u}r etwa 200 Jahre, vom Ende des 4. Jahrhunderts bis 589 n. Chr., geh{\"o}ren die Westgoten einem von der Orthodoxie der Reichskirche abweichenden christlichen Bekenntnis an. Auf dem 3. Konzil von Toledo beendet K{\"o}nig Rekkared diesen Zustand religi{\"o}ser Alterit{\"a}t durch die Konversion zum Katholizismus. Die antiken Berichte zeichnen nur vordergr{\"u}ndig ein koh{\"a}rentes Bild des Christentums der Goten. Dagegen weist Eike Faber Widerspr{\"u}che und Fehler in der {\"U}berlieferung nach und bietet eine Reihe neuer Interpretationen an. Die genauere Betrachtung vermag dabei sowohl den dogmatischen Gehalt des Christentums der Goten sch{\"a}rfer zu konturieren als auch die Beweggr{\"u}nde f{\"u}r die Annahme des neuen Glaubens herauszustellen und die traditionelle Datierung dieses Vorgangs zu widerlegen. Schließlich wird deutlich, welche Funktion das fortgesetzte Festhalten an einer demonstrativ anderen religi{\"o}sen {\"U}berzeugung f{\"u}r die Goten hatte. Pr{\"a}gnante Wegmarken der gotischen Geschichte, wie die Bibel{\"u}bersetzung Ulfilas, die Eroberung und Pl{\"u}nderung Roms 410 n. Chr. oder die demonstrative Aufgabe der religi{\"o}sen Differenz durch K{\"o}nig Rekkared, werden erst durch diesen neuen, umfassenden Kontext verst{\"a}ndlich.}, language = {de} } @article{SultanowWeber2014, author = {Sultanow, Eldar and Weber, Edzard}, title = {Prozessleitst{\"a}nde f{\"u}r verteilte und nichtplanbare Organisationsprozesse}, series = {Handbuch prozessorientiertes Wissensmanagement}, journal = {Handbuch prozessorientiertes Wissensmanagement}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {335 -- 344}, year = {2014}, language = {de} } @article{HenkePodtschaske2014, author = {Henke, Klaus-Dirk and Podtschaske, Beatrice}, title = {Chancen und Risiken genossenschaftlicher Leistungserbringung im Gesundheitssektor}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71045}, pages = {63 -- 71}, year = {2014}, abstract = {Klaus-Dirk Henke, em. Lehrstuhlinhaber f{\"u}r {\"O}ffentliche Finanzen und Gesundheits{\"o}konomie am Institut f{\"u}r Volkswirtschaftslehre und Wirtschaftsrecht der TU Berlin, behandelt, ausgehend von der derzeitigen Leistungserbringung im Gesundheitssektor, Chancen und Risiken der Leistungserbringung durch Genossenschaften.}, language = {de} } @article{Wandersleb2014, author = {Wandersleb, Michael}, title = {IT-Genossenschaften im digitalen Rathaus}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71068}, pages = {81 -- 92}, year = {2014}, abstract = {Matthias Klipp, Beigeordneter f{\"u}r Stadtentwicklung und Bauen der Stadtverwaltung Potsdam, diskutiert die Rolle von Genossenschaften als Bausteine kommunaler Wohnungspolitik. Am Beispiel der Landeshauptstadt Potsdam zeigt er Potenziale von Wohnungsbaugenossenschaften f{\"u}r die Sicherung einer attraktiven und ausreichenden Wohnungsversorgung f{\"u}r die B{\"u}rgerInnen auf. Er res{\"u}miert, dass sich die Strategien der Stadt f{\"u}r Neubau und Bestand auch in Kooperation mit Wohnungsgenossenschaften gerade auch bei der sozialen Wohnraumversorgung f{\"u}r die Bev{\"o}lkerung bew{\"a}hrt haben.}, language = {de} } @article{Wieg2014, author = {Wieg, Andreas}, title = {Krisenerprobung und Krisenresistenz des genossenschaftlichen Ordnungsmodells}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71005}, pages = {23 -- 31}, year = {2014}, abstract = {Andreas Wieg, Abteilungsleiter Vorstandsstab des „Deutschen Genossenschafts- und Raiffeisenverband e. V.", befasst sich in seinem Beitrag mit der Krisenerprobung und Krisenresistenz des genossenschaftlichen Ordnungsmodells. Dabei geht er auf die genossenschaftliche Organisationsstruktur und auf die Genossenschaftsarten ein. Er beschreibt M{\"o}glichkeiten von Genossenschaftsgr{\"u}ndungen und geht abschließend auf die Nachhaltigkeit neuer Genossenschaften ein.}, language = {de} } @article{Amschler2014, author = {Amschler, Helmut}, title = {„NEW" - Neue Energien West eG und B{\"u}rger-Energiegenossenschaft West eG}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71037}, pages = {57 -- 62}, year = {2014}, abstract = {Helmut Amschler, Vorstand der Stadtwerke Grafenw{\"o}hr, stellt in seinem Beitrag 2 konkrete Genossenschaften - die Neue Energien West eG und die B{\"u}rger-Energiegenossenschaft West eG vor. Dabei diskutiert er u. a. Kriterien wie B{\"u}rgerbeteiligung und Transparenz.}, language = {de} } @article{Klipp2014, author = {Klipp, Matthias}, title = {Genossenschaften}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71058}, pages = {73 -- 80}, year = {2014}, abstract = {Matthias Klipp, Beigeordneter f{\"u}r Stadtentwicklung und Bauen der Stadtverwaltung Potsdam, diskutiert die Rolle von Genossenschaften als Bausteine kommunaler Wohnungspolitik. Am Beispiel der Landeshauptstadt Potsdam zeigt er Potenziale von Wohnungsbaugenossenschaften f{\"u}r die Sicherung einer attraktiven und ausreichenden Wohnungsversorgung f{\"u}r die B{\"u}rgerInnen auf. Er res{\"u}miert, dass sich die Strategien der Stadt f{\"u}r Neubau und Bestand auch in Kooperation mit Wohnungsgenossenschaften gerade auch bei der sozialen Wohnraumversorgung f{\"u}r die Bev{\"o}lkerung bew{\"a}hrt haben.}, language = {de} } @inproceedings{KnothKiy2014, author = {Knoth, Alexander Henning and Kiy, Alexander}, title = {(Self-)confident through the introductory study phase with the Reflect App}, series = {CEUR Workshop Proceedings}, booktitle = {CEUR Workshop Proceedings}, number = {1227}, publisher = {CEUR-WS}, address = {Freiburg}, issn = {1613-0073}, pages = {172 -- 179}, year = {2014}, language = {en} } @misc{ArniCaliendoKuennetal.2014, author = {Arni, Patrick and Caliendo, Marco and K{\"u}nn, Steffen and Zimmermann, Klaus F.}, title = {The IZA evaluation dataset survey}, series = {Postprints der Universit{\"a}t Potsdam : Wirtschafts- und Sozialwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Wirtschafts- und Sozialwissenschaftliche Reihe}, number = {122}, issn = {1867-5808}, doi = {10.25932/publishup-43520}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-435204}, pages = {22}, year = {2014}, abstract = {This reference paper describes the sampling and contents of the IZA Evaluation Dataset Survey and outlines its vast potential for research in labor economics. The data have been part of a unique IZA project to connect administrative data from the German Federal Employment Agency with innovative survey data to study the out-mobility of individuals to work. This study makes the survey available to the research community as a Scientific Use File by explaining the development, structure, and access to the data. Furthermore, it also summarizes previous findings with the survey data.}, language = {en} } @article{VladovaBahrs2014, author = {Vladova, Gergana and Bahrs, Julian}, title = {Wissenstransfer als Mittel der internen Unternehmenskommunikation}, series = {Handbuch prozessorientiertes Wissensmanagment}, journal = {Handbuch prozessorientiertes Wissensmanagment}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {37 -- 47}, year = {2014}, language = {de} } @article{Apelojg2014, author = {Apelojg, Benjamin}, title = {Innovationen-Kreativit{\"a}t-Schule}, series = {Wissenschaft - Innovation- Technologie}, volume = {37}, journal = {Wissenschaft - Innovation- Technologie}, editor = {Banse, Gerhard and Grimmeis, Hermann}, publisher = {Trafo-Verlag}, address = {Berlin}, isbn = {978-3864640537}, pages = {325 -- 340}, year = {2014}, language = {de} } @article{HohensteinKliegl2014, author = {Hohenstein, Sven and Kliegl, Reinhold}, title = {Semantic preview benefit during reading}, series = {Journal of experimental psychology : Learning, memory, and cognition}, volume = {40}, journal = {Journal of experimental psychology : Learning, memory, and cognition}, number = {1}, publisher = {American Psychological Association}, address = {Washington}, issn = {0278-7393}, doi = {10.1037/a0033670}, pages = {166 -- 190}, year = {2014}, abstract = {Word features in parafoveal vision influence eye movements during reading. The question of whether readers extract semantic information from parafoveal words was studied in 3 experiments by using a gaze-contingent display change technique. Subjects read German sentences containing 1 of several preview words that were replaced by a target word during the saccade to the preview (boundary paradigm). In the 1st experiment the preview word was semantically related or unrelated to the target. Fixation durations on the target were shorter for semantically related than unrelated previews, consistent with a semantic preview benefit. In the 2nd experiment, half the sentences were presented following the rules of German spelling (i.e., previews and targets were printed with an initial capital letter), and the other half were presented completely in lowercase. A semantic preview benefit was obtained under both conditions. In the 3rd experiment, we introduced 2 further preview conditions, an identical word and a pronounceable nonword, while also manipulating the text contrast. Whereas the contrast had negligible effects, fixation durations on the target were reliably different for all 4 types of preview. Semantic preview benefits were greater for pretarget fixations closer to the boundary (large preview space) and, although not as consistently, for long pretarget fixation durations (long preview time). The results constrain theoretical proposals about eye movement control in reading.}, language = {en} } @article{BadalyanDierichStibaetal.2014, author = {Badalyan, Artavazd and Dierich, Marlen and Stiba, Konstanze and Schwuchow, Viola and Leimk{\"u}hler, Silke and Wollenberger, Ulla}, title = {Electrical wiring of the aldehyde oxidoreductase PaoABC with a polymer containing osmium redox centers}, series = {Biosensors}, volume = {4}, journal = {Biosensors}, number = {4}, publisher = {MDPI}, address = {Basel}, doi = {10.3390/bios4040403}, pages = {403 -- 421}, year = {2014}, abstract = {Biosensors for the detection of benzaldehyde and g-aminobutyric acid (GABA) are reported using aldehyde oxidoreductase PaoABC from Escherichia coli immobilized in a polymer containing bound low potential osmium redox complexes. The electrically connected enzyme already electrooxidizes benzaldehyde at potentials below -0.15 V (vs. Ag|AgCl, 1 M KCl). The pH-dependence of benzaldehyde oxidation can be strongly influenced by the ionic strength. The effect is similar with the soluble osmium redox complex and therefore indicates a clear electrostatic effect on the bioelectrocatalytic efficiency of PaoABC in the osmium containing redox polymer. At lower ionic strength, the pH-optimum is high and can be switched to low pH-values at high ionic strength. This offers biosensing at high and low pH-values. A "reagentless" biosensor has been formed with enzyme wired onto a screen-printed electrode in a flow cell device. The response time to addition of benzaldehyde is 30 s, and the measuring range is between 10-150 µM and the detection limit of 5 µM (signal to noise ratio 3:1) of benzaldehyde. The relative standard deviation in a series (n = 13) for 200 µM benzaldehyde is 1.9\%. For the biosensor, a response to succinic semialdehyde was also identified. Based on this response and the ability to work at high pH a biosensor for GABA is proposed by coimmobilizing GABA-aminotransferase (GABA-T) and PaoABC in the osmium containing redox polymer.}, language = {en} } @inproceedings{WochatzKopinskiEngeletal.2014, author = {Wochatz, Monique and Kopinski, Stephan and Engel, Tilman and M{\"u}ller, Steffen and Mayer, Frank}, title = {Flexion-extension ratio of trunk peak torque measures and antagonistic activity in males and females}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {46}, booktitle = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, number = {5}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, pages = {148 -- 148}, year = {2014}, language = {en} } @article{George2014, author = {George, Wolfgang}, title = {Regionalentwicklung durch genossenschaftlich organisiertes Engagement}, series = {KWI-Schriften}, journal = {KWI-Schriften}, number = {8}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1867-951X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71013}, pages = {33 -- 48}, year = {2014}, abstract = {Wolfgang George, Honorarprofessor der TH Mittelhessen und Vorstand der Andramedos eG, diskutiert ausgehend von seiner Definition der Regionalit{\"a}t Potenziale genossenschaftlicher L{\"o}sungen am Beispiel der Regionalen Energieversorgung (REV). Er res{\"u}miert, dass das Potenzial genossenschaftlicher L{\"o}sungen bis heute in diesem Feld nicht ann{\"a}hernd ausgesch{\"o}pft sei.}, language = {de} } @article{FritzschWangdosSantosetal.2014, author = {Fritzsch, Claire and Wang, Jing and dos Santos, Luara Ferreira and Mauritz, Karl-Heinz and Brunetti, Maddalena and Dohle, Christian}, title = {Different effects of the mirror illusion on motor and somatosensory processing}, series = {Restorative neurology and neuroscience}, volume = {32}, journal = {Restorative neurology and neuroscience}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0922-6028}, doi = {10.3233/RNN-130343}, pages = {269 -- 280}, year = {2014}, abstract = {Purpose: Mirror therapy can improve motor and sensory functions, but effects of the mirror illusion on primary motor and somatosensory cortex could not be established consistently. Methods: Fifteen right handed healthy volunteers performed or observed a finger-thumb opposition task. Cerebral activations during normal movement (NOR), mirrored movement (MIR) and movement observation (OBS) by means of a video chain were recorded with functional magnetic resonance imaging (fMRI). Activation sizes in movement > static conditions were identified using SPM8 (p < 0.001, unc.) and attributed to predefined areas employing the Anatomy toolbox 1.8. Laterality indices for the responsive areas were calculated on the basis of the number of activated voxels. Results: Relevant bilateral BOLD responses were found in primary motor (M1) and somatosensory (S1 - BA 2, 3b and 3a) cortex, premotor and parietal areas and V5. When comparing MIR to NOR, no significant change of contralateral activation in M1 was found, but clearly at S1 with differences between hands. Conclusion: The mirror illusion does not elicit immediate changes in motor areas, yet there is a direct effect on somatosensory areas, especially for left hand movements. These results suggest different effects of mirror therapy on processing and rehabilitation of motor and sensory function.}, language = {en} } @article{LohmannTietjenBlaumetal.2014, author = {Lohmann, Dirk and Tietjen, Britta and Blaum, Niels and Joubert, David Francois and Jeltsch, Florian}, title = {Prescribed fire as a tool for managing shrub encroachment in semi-arid savanna rangelands}, series = {Journal of arid environments}, volume = {107}, journal = {Journal of arid environments}, publisher = {Elsevier}, address = {London}, issn = {0140-1963}, doi = {10.1016/j.jaridenv.2014.04.003}, pages = {49 -- 56}, year = {2014}, abstract = {Savanna rangelands worldwide are threatened by shrub encroachment, i.e. the increase of woody plant species at the cost of perennial grasses, causing a strong decline in the productivity of domestic livestock production. Although recent studies indicate that fire might be of great importance for semi-arid and arid savanna dynamics, it is largely not applied in the management of semi-arid rangelands especially with regard to woody plant control. We used the eco-hydrological savanna model EcoHyD to simulate the effects of different fire management strategies on semi-arid savanna vegetation and to assess their longterm suitability for semi-arid rangeland management. Simulation results show that prescribed fires, timed to kill tree seedlings prevented shrub encroachment for a broad range of livestock densities while the possible maximum long-term cattle densities on the simulated semi-arid rangeland in Namibia increased by more than 30\%. However, when grazing intensity was too high, fire management failed in preventing shrub encroachment. Our findings indicate that with regard to fire management a clear distinction between mesic and more arid savannas is necessary: While the frequency of fires is of relevance for mesic savannas, we recommend a fire management focussing on the timing of fire for semi-arid and arid savannas. (C) 2014 Elsevier Ltd. All rights reserved.}, language = {en} } @article{LohmannFalkGeissleretal.2014, author = {Lohmann, Dirk and Falk, Thomas and Geissler, Katja and Blaum, Niels and Jeltsch, Florian}, title = {Determinants of semi-arid rangeland management in a land reform setting in Namibia}, series = {Journal of arid environments}, volume = {100}, journal = {Journal of arid environments}, publisher = {Elsevier}, address = {London}, issn = {0140-1963}, doi = {10.1016/j.jaridenv.2013.10.005}, pages = {23 -- 30}, year = {2014}, abstract = {To assess the ecological and economic implications of the redistributive land reform in semi-arid Namibia, we investigated to what extent land reform beneficiaries adjust herd size and herd composition according to environmental (rainfall, vegetation) and economic variables (herd size, financial assets, running costs). We performed model-based role-plays with Namibian land reform beneficiaries, simulating 10 years of rangeland management. Our study revealed that the farmers surveyed mainly manage their herds according to their economic situation (herd size and account balance) but do not take environmental variability (rainfall and vegetation) into account. Further, our results indicate that, due to financial pressure, farmers are not able to apply their desired management strategies, and that owners of small farms face a higher risk of economic failure. However, farmers apply rather conservative and constant stocking rates and will thus, given the current economic limitations, likely not contribute to semi-arid savanna degradation. We conclude that land reform beneficiaries need support to be able to apply straightforward and efficient management strategies. This could be achieved by facilitating cooperation between small farming businesses and by supporting initial investment in productive cattle herds at the time of redistribution of the land.}, language = {en} } @article{Wyrwa2014, author = {Wyrwa, Ulrich}, title = {For the Hundredth nothing New German Language New Releases to the First World War (Part I)}, series = {Deutsche Zeitschrift f{\"u}r Geschichtswissenschaft}, volume = {62}, journal = {Deutsche Zeitschrift f{\"u}r Geschichtswissenschaft}, number = {11}, publisher = {Metropol-Verl.}, address = {Berlin}, issn = {0044-2828}, pages = {921 -- 940}, year = {2014}, language = {de} } @article{Crome2014, author = {Crome, Erhard}, title = {Deutschland und die USA : eine geopolitische Perspektive}, year = {2014}, language = {de} } @article{Roeder2014, author = {R{\"o}der, Katrin}, title = {Reparative reading, post-structuralist Hermeneutics and T. S. Eliot's four quartets}, series = {Anglia : journal of English philology}, volume = {132}, journal = {Anglia : journal of English philology}, number = {1}, publisher = {De Gruyter}, address = {Berlin}, issn = {0340-5222}, doi = {10.1515/anglia-2014-0004}, pages = {58 -- 77}, year = {2014}, abstract = {This essay approaches T. S. Eliot's Four Quartets (1935-1942) from the perspectives of Eve Kosofsky Sedgwick's critical practice of reparative reading and of Paul Ricoeur's poststructuralist hermeneutics. It demonstrates that Sedgwick's and Ricoeur's approaches can be productively combined to investigate hermeneutic processes in which the textual energy of a dissemination of meaning is redirected by a reparative or integrative impulse. In Four Quartets, this impetus induces the creation of semantic innovation through a violation of semantic pertinence, that is, through novel, tensional and provisional connections between formerly separate textual elements and semantic units.}, language = {en} } @article{DolgenerFreudenbergerSchneeweissetal.2014, author = {Dolgener, Nicola and Freudenberger, L. and Schneeweiss, N. and Ibisch, P. L. and Tiedemann, Ralph}, title = {Projecting current and potential future distribution of the Fire-bellied toad Bombina bombina under climate change in north-eastern Germany}, series = {Regional environmental change}, volume = {14}, journal = {Regional environmental change}, number = {3}, publisher = {Springer}, address = {Heidelberg}, issn = {1436-3798}, doi = {10.1007/s10113-013-0468-9}, pages = {1063 -- 1072}, year = {2014}, abstract = {Environmental change is likely to have a strong impact on biodiversity, and many species may shift their distribution in response. In this study, we aimed at projecting the availability of suitable habitat for an endangered amphibian species, the Fire-bellied toad Bombina bombina, in Brandenburg (north-eastern Germany). We modelled a potential habitat distribution map based on (1) a database with 10,581 presence records for Bombina from the years 1990 to 2009, (2) current estimates for ecogeographical variables (EGVs) and (3) the future projection of these EGVs according to the statistical regional model, respectively, the soil and water integrated model, applying the maximum entropy approach (Maxent). By comparing current and potential future distributions, we evaluated the projected change in distribution of suitable habitats and identified the environmental variables most associated with habitat suitability that turned out to be climatic variables related to the hydrological cycle. Under the applied scenario, our results indicate increasing habitat suitability in many areas and an extended range of suitable habitats. However, even if the environmental conditions in Brandenburg may change as predicted, it is questionable whether the Fire-bellied toad will truly benefit, as dispersal abilities of amphibian species are limited and strongly influenced by anthropogenic disturbances, that is, intensive agriculture, habitat destruction and fragmentation. Furthermore, agronomic pressure is likely to increase on productive areas with fertile soils and high water retention capacities, indeed those areas suitable for B. bombina. All these changes may affect temporary pond hydrology as well as the reproductive success and breeding phenology of toads.}, language = {en} } @article{DolgenerFreudenbergerSchlucketal.2014, author = {Dolgener, N. and Freudenberger, L. and Schluck, M. and Schneeweiss, N. and Ibisch, P. L. and Tiedemann, Ralph}, title = {Environmental niche factor analysis (ENFA) relates environmental parameters to abundance and genetic diversity in an endangered amphibian, the fire-bellied-toad (Bombina bombina)}, series = {Conservation genetics}, volume = {15}, journal = {Conservation genetics}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {1566-0621}, doi = {10.1007/s10592-013-0517-4}, pages = {11 -- 21}, year = {2014}, abstract = {Increasing attempts are made to understand the factors responsible for both the demographic and genetic depletion in amphibian populations. Landscape genetics aims at a spatially explicit correlation of genetic population parameters to landscape features. Using data from the endangered fire-bellied toad Bombina bombina in Brandenburg (Northeastern Germany), we performed an environmental niche factor analysis (ENFA), relating demographic (abundance) and genetic (diversity at 17 microsatellite loci and partial sequences of the mitochondrial control region in 434 individuals from 16 populations) parameters to ecological and anthropogenic variables such as temperature, precipitation, soil wetness, water runoff, vegetation density, and road/traffic impact. We found significant correlations between road disturbance and observed heterozygosity and between soil wetness and mitochondrial diversity. As the influences of the environmental variables can differ between different indicators for genetic diversity, population size and abundance data, our ENFA-based landscape genetics approach allows us to put various aspects of long- versus short term effective population size and genetic connectivity into an ecological and spatially explicit context, enabling potentially even forecast assessment under future environmental scenarios.}, language = {en} } @article{Fenn2014, author = {Fenn, Monika}, title = {Konstruktivistisches Geschichtsverst{\"a}ndnis im Unterricht f{\"o}rdern : Studierende {\"a}ndern ihr Lehrverhalten von einseitig instruktional in problemorientiert}, isbn = {978-3- 0355-0022-6}, year = {2014}, language = {de} } @article{FennBrandt2014, author = {Fenn, Monika and Brandt, Christopher Georg}, title = {Time-Travel-Treasures}, series = {T{\"u}r an T{\"u}r und Haus an Haus Nachbarschaften in der historischen Stadt Themenbuch 2014}, journal = {T{\"u}r an T{\"u}r und Haus an Haus Nachbarschaften in der historischen Stadt Themenbuch 2014}, publisher = {Arbeitsgemeinschaft St{\"a}dte mit historischen Stadkernen des Landes Brandenburg}, address = {Potsdam}, isbn = {978-3-00-047888-8}, pages = {76 -- 79}, year = {2014}, language = {de} } @article{TiedemannSchneiderHavensteinetal.2014, author = {Tiedemann, Ralph and Schneider, Anja R. R. and Havenstein, Katja and Blanck, Torsten and Meier, Elmar and Raffel, Martina and Zwartepoorte, Henk and Plath, Martin}, title = {New microsatellite markers allow high-resolution taxon delimitation in critically endangered Asian box turtles, genus Cuora}, series = {Salamandra : German journal of herpetology}, volume = {50}, journal = {Salamandra : German journal of herpetology}, number = {3}, publisher = {Deutsche Gesellschaft f{\"u}r Herpetologie und Terrarienkunde}, address = {Darmstadt}, issn = {0036-3375}, pages = {139 -- 146}, year = {2014}, abstract = {We isolated and characterized 16 new di- and tetranudeotide microsatellite markers for the critically endangered Asian box turtle genus Cuora, focusing on the "Cuora trifasciata" species complex. The new markers were then used to analyse genetic variability and divergence amongst five described species within this complex, namely C. aurocapitata (n = 18), C. cyclornata (n = 31), C. pani (n = 6), C. trifasciata (n = 58), and C. zhoui (n = 7). Our results support the view that all five species represent valid taxa. Within two species (C. trifasciata and C. cyclornata), two distinct morphotypes were corroborated by microsatellite divergence. For three individuals, morphologically identified as being of hybrid origin, the hybrid status was confirmed by our genetic analysis. Our results confirm the controversial species (Cuora aurocapitata, C. cyclornata) and subspecies/morphotypes (C. cyclornata meieri, C. trifasciata cf. trifasciata) to be genetically distinct, which has critical implications for conservation strategies.}, language = {en} } @phdthesis{Orgis2014, author = {Orgis, Thomas}, title = {Unstetige Galerkin-Diskretisierung niedriger Ordnung in einem atmosph{\"a}rischen Multiskalenmodell}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70687}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Die Dynamik der Atmosph{\"a}re der Erde umfasst einen Bereich von mikrophysikalischer Turbulenz {\"u}ber konvektive Prozesse und Wolkenbildung bis zu planetaren Wellenmustern. F{\"u}r Wettervorhersage und zur Betrachtung des Klimas {\"u}ber Jahrzehnte und Jahrhunderte ist diese Gegenstand der Modellierung mit numerischen Verfahren. Mit voranschreitender Entwicklung der Rechentechnik sind Neuentwicklungen der dynamischen Kerne von Klimamodellen, die mit der feiner werdenden Aufl{\"o}sung auch entsprechende Prozesse aufl{\"o}sen k{\"o}nnen, notwendig. Der dynamische Kern eines Modells besteht in der Umsetzung (Diskretisierung) der grundlegenden dynamischen Gleichungen f{\"u}r die Entwicklung von Masse, Energie und Impuls, so dass sie mit Computern numerisch gel{\"o}st werden k{\"o}nnen. Die vorliegende Arbeit untersucht die Eignung eines unstetigen Galerkin-Verfahrens niedriger Ordnung f{\"u}r atmosph{\"a}rische Anwendungen. Diese Eignung f{\"u}r Gleichungen mit Wirkungen von externen Kr{\"a}ften wie Erdanziehungskraft und Corioliskraft ist aus der Theorie nicht selbstverst{\"a}ndlich. Es werden n{\"o}tige Anpassungen beschrieben, die das Verfahren stabilisieren, ohne sogenannte „slope limiter" einzusetzen. F{\"u}r das unmodifizierte Verfahren wird belegt, dass es nicht geeignet ist, atmosph{\"a}rische Gleichgewichte stabil darzustellen. Das entwickelte stabilisierte Modell reproduziert eine Reihe von Standard-Testf{\"a}llen der atmosph{\"a}rischen Dynamik mit Euler- und Flachwassergleichungen in einem weiten Bereich von r{\"a}umlichen und zeitlichen Skalen. Die L{\"o}sung der thermischen Windgleichung entlang der mit den Isobaren identischen charakteristischen Kurven liefert atmosph{\"a}rische Gleichgewichtszust{\"a}nde mit durch vorgegebenem Grundstrom einstellbarer Neigung zu(barotropen und baroklinen)Instabilit{\"a}ten, die f{\"u}r die Entwicklung von Zyklonen wesentlich sind. Im Gegensatz zu fr{\"u}heren Arbeiten sind diese Zust{\"a}nde direkt im z-System(H{\"o}he in Metern)definiert und m{\"u}ssen nicht aus Druckkoordinaten {\"u}bertragen werden.Mit diesen Zust{\"a}nden, sowohl als Referenzzustand, von dem lediglich die Abweichungen numerisch betrachtet werden, und insbesondere auch als Startzustand, der einer kleinen St{\"o}rung unterliegt, werden verschiedene Studien der Simulation von barotroper und barokliner Instabilit{\"a}t durchgef{\"u}hrt. Hervorzuheben ist dabei die durch die Formulierung von Grundstr{\"o}men mit einstellbarer Baroklinit{\"a}t erm{\"o}glichte simulationsgest{\"u}tzte Studie des Grades der baroklinen Instabilit{\"a}t verschiedener Wellenl{\"a}ngen in Abh{\"a}ngigkeit von statischer Stabilit{\"a}t und vertikalem Windgradient als Entsprechung zu Stabilit{\"a}tskarten aus theoretischen Betrachtungen in der Literatur.}, language = {de} } @phdthesis{Schultheiss2014, author = {Schultheiss, Corinna}, title = {Die Bewertung der pharyngalen Schluckphase mittels Bioimpedanz : Evaluation eines Mess- und Diagnostikverfahrens}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-284-1}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-69589}, school = {Universit{\"a}t Potsdam}, pages = {XV, 108}, year = {2014}, abstract = {Schlucken ist ein lebensnotwendiger Prozess, dessen Diagnose und Therapie eine enorme Herausforderung bedeutet. Die Erkennung und Beurteilung von Schlucken und Schluckst{\"o}rungen erfordert den Einsatz von technisch aufwendigen Verfahren, wie Videofluoroskopie (VFSS) und fiberoptisch-endoskopische Schluckuntersuchung (FEES), die eine hohe Belastung f{\"u}r die Patienten darstellen. Beide Verfahren werden als Goldstandard in der Diagnostik von Schluckst{\"o}rungen eingesetzt. Die Durchf{\"u}hrung obliegt in der Regel {\"a}rztlichem Personal. Dar{\"u}ber hinaus erfordert die Auswertung des Bildmaterials der Diagnostik eine ausreichend hohe Erfahrung. In der Therapie findet neben den klassischen Therapiemethoden, wie z.B. di{\"a}tetische Modifikationen und Schluckman{\"o}ver, auch zunehmend die funktionelle Elektrostimulation Anwendung. Ziel der vorliegenden Dissertationsschrift ist die Evaluation eines im Verbundprojekt BigDysPro entwickelten Bioimpedanz (BI)- und Elektromyographie (EMG)-Messsystems. Es wurde gepr{\"u}ft, ob sich das BI- und EMG-Messsystem eignet, sowohl in der Diagnostik als auch in der Therapie als eigenst{\"a}ndiges Messsystem und im Rahmen einer Schluckneuroprothese eingesetzt zu werden. In verschiedenen Studien wurden gesunde Probanden f{\"u}r die {\"U}berpr{\"u}fung der Reproduzierbarkeit (Intra-und Interrater-Reliabilit{\"a}t), der Unterscheidbarkeit von Schluck- und Kopfbewegungen und der Beeinflussung der Biosignale (BI, EMG) durch verschiedene Faktoren (Geschlecht der Probanden, Leitf{\"a}higkeit, Konsistenz und Menge der Nahrung) untersucht. Durch zus{\"a}tzliche Untersuchungen mit Patienten wurde einerseits der Einfluss der Elektrodenart gepr{\"u}ft. Andererseits wurden parallel zur BI- und EMG-Messung auch endoskopische (FEES) und radiologische Schluckuntersuchungen (VFSS) durchgef{\"u}hrt, um die Korrelation der Biosignale mit der Bewegung anatomischer Strukturen (VFSS) und mit der Schluckqualit{\"a}t (FEES) zu pr{\"u}fen. Es wurden 31 gesunde Probanden mit 1819 Schlucken und 60 Patienten mit 715 Schlucken untersucht. Die Messkurven zeigten einen typischen, reproduzierbaren Signalverlauf, der mit anatomischen und funktionellen {\"A}nderungen w{\"a}hrend der pharyngalen Schluckphase in der VFSS korrelierte (r > 0,7). Aus dem Bioimpedanzsignal konnten Merkmale extrahiert werden, die mit physiologischen Merkmalen eines Schluckes, wie verz{\"o}gerter laryngealer Verschluss und Kehlkopfhebung, korrelierten und eine Einsch{\"a}tzung der Schluckqualit{\"a}t in {\"U}bereinstimmung mit der FEES erm{\"o}glichten. In den Signalverl{\"a}ufen der Biosignale konnten signifikante Unterschiede zwischen Schluck- und Kopfbewegungen und den Nahrungsmengen und -konsistenzen nachgewiesen werden. Im Gegensatz zur Nahrungsmenge und -konsistenz zeigte die Leitf{\"a}higkeit der zu schluckenden Nahrung, das Geschlecht der Probanden und die Art der Elektroden keinen signifikanten Einfluss auf die Messsignale. Mit den Ergebnissen der Evaluation konnte gezeigt werden, dass mit dem BI- und EMG-Messsystem ein neuartiges und nicht-invasives Verfahren zur Verf{\"u}gung steht, das eine reproduzierbare Darstellung der pharyngalen Schluckphase und ihrer Ver{\"a}nderungen erm{\"o}glicht. Daraus ergeben sich vielseitige Einsatzm{\"o}glichkeiten in der Diagnostik, z.B. Langzeitmessung zur Schluckfrequenz und Einsch{\"a}tzung der Schluckqualit{\"a}t, und in der Therapie, z.B. der Einsatz in einer Schluckneuroprothese oder als Biofeedback zur Darstellung des Schluckes, von Schluckst{\"o}rungen.}, language = {de} } @article{Klein2014, author = {Klein, Eckart}, title = {Entstehung des Grundgesetzes der Bundesrepublik Deutschland}, series = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, journal = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70856}, pages = {9 -- 16}, year = {2014}, language = {de} } @article{FranzkeBuechner2014, author = {Franzke, Jochen and B{\"u}chner, Christiane}, title = {Entstehung der Verfassung des Landes Brandenburg}, series = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, journal = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70868}, pages = {17 -- 27}, year = {2014}, language = {de} } @article{Doroshenko2014, author = {Doroshenko, Egor N.}, title = {{\"A}nderungen der Verfassung der Russischen F{\"o}deration}, series = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, journal = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70872}, pages = {29 -- 36}, year = {2014}, language = {de} } @article{Thiele2014, author = {Thiele, Carmen}, title = {Stabilit{\"a}t und Dynamik der Verfassungsprinzipien des Grundgesetzes der Bundesrepublik Deutschland}, series = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, journal = {Verfassungsentwicklung in Russland und Deutschland : Materialien des russisch-deutschen Symposiums anl{\"a}sslich des 20. Jahrestages der Verfassung der Russischen F{\"o}deration am 25. und 26. September 2013 an der Universit{\"a}t Potsdam}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70908}, pages = {55 -- 64}, year = {2014}, language = {de} } @phdthesis{Herenz2014, author = {Herenz, Peter}, title = {A study of the absorption characteristics of gaseous galaxy halos in the local Universe}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70513}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Today, it is well known that galaxies like the Milky Way consist not only of stars but also of gas and dust. The galactic halo, a sphere of gas that surrounds the stellar disk of a galaxy, is especially interesting. It provides a wealth of information about in and outflowing gaseous material towards and away from galaxies and their hierarchical evolution. For the Milky Way, the so-called high-velocity clouds (HVCs), fast moving neutral gas complexes in the halo that can be traced by absorption-line measurements, are believed to play a crucial role in the overall matter cycle in our Galaxy. Over the last decades, the properties of these halo structures and their connection to the local circumgalactic and intergalactic medium (CGM and IGM, respectively) have been investigated in great detail by many different groups. So far it remains unclear, however, to what extent the results of these studies can be transferred to other galaxies in the local Universe. In this thesis, we study the absorption properties of Galactic HVCs and compare the HVC absorption characteristics with those of intervening QSO absorption-line systems at low redshift. The goal of this project is to improve our understanding of the spatial extent and physical conditions of gaseous galaxy halos in the local Universe. In the first part of the thesis we use HST /STIS ultraviolet spectra of more than 40 extragalactic background sources to statistically analyze the absorption properties of the HVCs in the Galactic halo. We determine fundamental absorption line parameters including covering fractions of different weakly/intermediately/highly ionized metals with a particular focus on SiII and MgII. Due to the similarity in the ionization properties of SiII and MgII, we are able to estimate the contribution of HVC-like halo structures to the cross section of intervening strong MgII absorbers at z = 0. Our study implies that only the most massive HVCs would be regarded as strong MgII absorbers, if the Milky Way halo would be seen as a QSO absorption line system from an exterior vantage point. Combining the observed absorption-cross section of Galactic HVCs with the well-known number density of intervening strong MgII absorbers at z = 0, we conclude that the contribution of infalling gas clouds (i.e., HVC analogs) in the halos of Milky Way-type galaxies to the cross section of strong MgII absorbers is 34\%. This result indicates that only about one third of the strong MgII absorption can be associated with HVC analogs around other galaxies, while the majority of the strong MgII systems possibly is related to galaxy outflows and winds. The second part of this thesis focuses on the properties of intervening metal absorbers at low redshift. The analysis of the frequency and physical conditions of intervening metal systems in QSO spectra and their relation to nearby galaxies offers new insights into the typical conditions of gaseous galaxy halos. One major aspect in our study was to regard intervening metal systems as possible HVC analogs. We perform a detailed analysis of absorption line properties and line statistics for 57 metal absorbers along 78 QSO sightlines using newly-obtained ultraviolet spectra obtained with HST /COS. We find clear evidence for bimodal distribution in the HI column density in the absorbers, a trend that we interpret as sign for two different classes of absorption systems (with HVC analogs at the high-column density end). With the help of the strong transitions of SiII λ1260, SiIII λ1206, and CIII λ977 we have set up Cloudy photoionization models to estimate the local ionization conditions, gas densities, and metallicities. We find that the intervening absorption systems studied by us have, on average, similar physical conditions as Galactic HVC absorbers, providing evidence that many of them represent HVC analogs in the vicinity of other galaxies. We therefore determine typical halo sizes for SiII, SiIII, and CIII for L = 0.01L∗ and L = 0.05L∗ galaxies. Based on the covering fractions of the different ions in the Galactic halo, we find that, for example, the typical halo size for SiIII is ∼ 160 kpc for L = 0.05L∗ galaxies. We test the plausibility of this result by searching for known galaxies close to the QSO sightlines and at similar redshifts as the absorbers. We find that more than 34\% of the measured SiIII absorbers have galaxies associated with them, with the majority of the absorbers indeed being at impact parameters ρ ≤160 kpc.}, language = {en} } @phdthesis{Raiser2014, author = {Raiser, Christoph}, title = {Kompromisse im Europ{\"a}ischen Parlament : eine kultursoziologische Analyse von Entscheidungsprozessen in einer supranationalen Institution}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-283-4}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-69560}, school = {Universit{\"a}t Potsdam}, pages = {xxiii, 313}, year = {2014}, abstract = {Das Europ{\"a}ische Parlament ist zweifelsohne die m{\"a}chtigste parlamentarische Versammlung auf supranationaler Ebene. Das provoziert die Frage, wie Entscheidungen in diesem Parlament gef{\"a}llt werden und wie sie begr{\"u}ndet werden k{\"o}nnen. Darin liegt das Hauptanliegen dieser Arbeit, die zur Beantwortung dieser Frage auf soziologische Ans{\"a}tze der Erkl{\"a}rung sozialen Handelns zur{\"u}ckgreift und damit einen neuen Zugang zur Beobachtung parlamentarischen Handelns schafft. Dabei arbeitet sie heraus, wie wichtig es ist, bei der Analyse politischer Entscheidungsprozesse zu beachten, wie politische Probleme von Akteuren interpretiert und gegen{\"u}ber Verhandlungspartnern dargestellt werden. An den Fallbeispielen der Entscheidungsprozesse zur Dienstleistungsrichtlinie, zur Chemikalien-Verordnung REACH und dem TDIP (CIA)-Ausschuss in der Legislaturperiode 2004-2009, wird der soziale Mechanismus dargestellt, der hinter Einigungen im Europ{\"a}ischen Parlament steckt. Kultur als Interpretation der Welt wird so zum Schl{\"u}ssel des Verst{\"a}ndnisses politischer Entscheidungen auf supranationaler Ebene.}, language = {de} } @phdthesis{RoggeSolti2014, author = {Rogge-Solti, Andreas}, title = {Probabilistic Estimation of Unobserved Process Events}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70426}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Organizations try to gain competitive advantages, and to increase customer satisfaction. To ensure the quality and efficiency of their business processes, they perform business process management. An important part of process management that happens on the daily operational level is process controlling. A prerequisite of controlling is process monitoring, i.e., keeping track of the performed activities in running process instances. Only by process monitoring can business analysts detect delays and react to deviations from the expected or guaranteed performance of a process instance. To enable monitoring, process events need to be collected from the process environment. When a business process is orchestrated by a process execution engine, monitoring is available for all orchestrated process activities. Many business processes, however, do not lend themselves to automatic orchestration, e.g., because of required freedom of action. This situation is often encountered in hospitals, where most business processes are manually enacted. Hence, in practice it is often inefficient or infeasible to document and monitor every process activity. Additionally, manual process execution and documentation is prone to errors, e.g., documentation of activities can be forgotten. Thus, organizations face the challenge of process events that occur, but are not observed by the monitoring environment. These unobserved process events can serve as basis for operational process decisions, even without exact knowledge of when they happened or when they will happen. An exemplary decision is whether to invest more resources to manage timely completion of a case, anticipating that the process end event will occur too late. This thesis offers means to reason about unobserved process events in a probabilistic way. We address decisive questions of process managers (e.g., "when will the case be finished?", or "when did we perform the activity that we forgot to document?") in this thesis. As main contribution, we introduce an advanced probabilistic model to business process management that is based on a stochastic variant of Petri nets. We present a holistic approach to use the model effectively along the business process lifecycle. Therefore, we provide techniques to discover such models from historical observations, to predict the termination time of processes, and to ensure quality by missing data management. We propose mechanisms to optimize configuration for monitoring and prediction, i.e., to offer guidance in selecting important activities to monitor. An implementation is provided as a proof of concept. For evaluation, we compare the accuracy of the approach with that of state-of-the-art approaches using real process data of a hospital. Additionally, we show its more general applicability in other domains by applying the approach on process data from logistics and finance.}, language = {en} } @phdthesis{Ahmad2014, author = {Ahmad, Nadeem}, title = {People centered HMI's for deaf and functionally illiterate users}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70391}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The objective and motivation behind this research is to provide applications with easy-to-use interfaces to communities of deaf and functionally illiterate users, which enables them to work without any human assistance. Although recent years have witnessed technological advancements, the availability of technology does not ensure accessibility to information and communication technologies (ICT). Extensive use of text from menus to document contents means that deaf or functionally illiterate can not access services implemented on most computer software. Consequently, most existing computer applications pose an accessibility barrier to those who are unable to read fluently. Online technologies intended for such groups should be developed in continuous partnership with primary users and include a thorough investigation into their limitations, requirements and usability barriers. In this research, I investigated existing tools in voice, web and other multimedia technologies to identify learning gaps and explored ways to enhance the information literacy for deaf and functionally illiterate users. I worked on the development of user-centered interfaces to increase the capabilities of deaf and low literacy users by enhancing lexical resources and by evaluating several multimedia interfaces for them. The interface of the platform-independent Italian Sign Language (LIS) Dictionary has been developed to enhance the lexical resources for deaf users. The Sign Language Dictionary accepts Italian lemmas as input and provides their representation in the Italian Sign Language as output. The Sign Language dictionary has 3082 signs as set of Avatar animations in which each sign is linked to a corresponding Italian lemma. I integrated the LIS lexical resources with MultiWordNet (MWN) database to form the first LIS MultiWordNet(LMWN). LMWN contains information about lexical relations between words, semantic relations between lexical concepts (synsets), correspondences between Italian and sign language lexical concepts and semantic fields (domains). The approach enhances the deaf users' understanding of written Italian language and shows that a relatively small set of lexicon can cover a significant portion of MWN. Integration of LIS signs with MWN made it useful tool for computational linguistics and natural language processing. The rule-based translation process from written Italian text to LIS has been transformed into service-oriented system. The translation process is composed of various modules including parser, semantic interpreter, generator, and spatial allocation planner. This translation procedure has been implemented in the Java Application Building Center (jABC), which is a framework for extreme model driven design (XMDD). The XMDD approach focuses on bringing software development closer to conceptual design, so that the functionality of a software solution could be understood by someone who is unfamiliar with programming concepts. The transformation addresses the heterogeneity challenge and enhances the re-usability of the system. For enhancing the e-participation of functionally illiterate users, two detailed studies were conducted in the Republic of Rwanda. In the first study, the traditional (textual) interface was compared with the virtual character-based interactive interface. The study helped to identify usability barriers and users evaluated these interfaces according to three fundamental areas of usability, i.e. effectiveness, efficiency and satisfaction. In another study, we developed four different interfaces to analyze the usability and effects of online assistance (consistent help) for functionally illiterate users and compared different help modes including textual, vocal and virtual character on the performance of semi-literate users. In our newly designed interfaces the instructions were automatically translated in Swahili language. All the interfaces were evaluated on the basis of task accomplishment, time consumption, System Usability Scale (SUS) rating and number of times the help was acquired. The results show that the performance of semi-literate users improved significantly when using the online assistance. The dissertation thus introduces a new development approach in which virtual characters are used as additional support for barely literate or naturally challenged users. Such components enhanced the application utility by offering a variety of services like translating contents in local language, providing additional vocal information, and performing automatic translation from text to sign language. Obviously, there is no such thing as one design solution that fits for all in the underlying domain. Context sensitivity, literacy and mental abilities are key factors on which I concentrated and the results emphasize that computer interfaces must be based on a thoughtful definition of target groups, purposes and objectives.}, language = {en} } @phdthesis{Tenenboim2014, author = {Tenenboim, Yehezkel}, title = {Characterization of a Chlamydomonas protein involved in cell division and autophagy}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70650}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The contractile vacuole (CV) is an osmoregulatory organelle found exclusively in algae and protists. In addition to expelling excessive water out of the cell, it also expels ions and other metabolites and thereby contributes to the cell's metabolic homeostasis. The interest in the CV reaches beyond its immediate cellular roles. The CV's function is tightly related to basic cellular processes such as membrane dynamics and vesicle budding and fusion; several physiological processes in animals, such as synaptic neurotransmission and blood filtration in the kidney, are related to the CV's function; and several pathogens, such as the causative agents of sleeping sickness, possess CVs, which may serve as pharmacological targets. The green alga Chlamydomonas reinhardtii has two CVs. They are the smallest known CVs in nature, and they remain relatively untouched in the CV-related literature. Many genes that have been shown to be related to the CV in other organisms have close homologues in C. reinhardtii. We attempted to silence some of these genes and observe the effect on the CV. One of our genes, VMP1, caused striking, severe phenotypes when silenced. Cells exhibited defective cytokinesis and aberrant morphologies. The CV, incidentally, remained unscathed. In addition, mutant cells showed some evidence of disrupted autophagy. Several important regulators of the cell cycle as well as autophagy were found to be underexpressed in the mutant. Lipidomic analysis revealed many meaningful changes between wild-type and mutant cells, reinforcing the compromised-autophagy observation. VMP1 is a singular protein, with homologues in numerous eukaryotic organisms (aside from fungi), but usually with no relatives in each particular genome. Since its first characterization in 2002 it has been associated with several cellular processes and functions, namely autophagy, programmed cell-death, secretion, cell adhesion, and organelle biogenesis. It has been implicated in several human diseases: pancreatitis, diabetes, and several types of cancer. Our results reiterate some of the observations in VMP1's six reported homologues, but, importantly, show for the first time an involvement of this protein in cell division. The mechanisms underlying this involvement in Chlamydomonas, as well as other key aspects, such as VMP1's subcellular localization and interaction partners, still await elucidation.}, language = {en} } @misc{LiuTkachovKomberetal.2014, author = {Liu, W. and Tkachov, R. and Komber, H. and Senkovskyy, V. and Schubert, M. and Wei, Z. and Facchetti, A. and Neher, Dieter and Kiriy, A.}, title = {Chain-growth polycondensation of perylene diimide-based copolymers}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98724}, pages = {8}, year = {2014}, abstract = {Herein, we report the chain-growth tin-free room temperature polymerization method to synthesize n-type perylene diimide-dithiophene-based conjugated polymers (PPDIT2s) suitable for solar cell and transistor applications. The palladium/electron-rich tri-tert-butylphosphine catalyst is effective to enable the chain-growth polymerization of anion-radical monomer Br-TPDIT-Br/Zn to PPDIT2 with a molecular weight up to Mw ≈ 50 kg mol-1 and moderate polydispersity. This is the second example of the polymerization of unusual anion-radical aromatic complexes formed in a reaction of active Zn and electron-deficient diimide-based aryl halides. As such, the discovered polymerization method is not a specific reactivity feature of the naphthalene-diimide derivatives but is rather a general polymerization tool. This is an important finding, given the significantly higher maximum external quantum efficiency that can be reached with PDI-based copolymers (32-45\%) in all-polymer solar cells compared to NDI-based materials (15-30\%). Our studies revealed that PPDIT2 synthesized by the new method and the previously published polymer prepared by step-growth Stille polycondensation show similar electron mobility and all-polymer solar cell performance. At the same time, the polymerization reported herein has several technological advantages as it proceeds relatively fast at room temperature and does not involve toxic tin-based compounds. Because several chain-growth polymerization reactions are well-suited for the preparation of well-defined multi-functional polymer architectures, the next target is to explore the utility of the discovered polymerization in the synthesis of end-functionalized polymers and block copolymers. Such materials would be helpful to improve the nanoscale morphology of polymer blends in all-polymer solar cells.}, language = {en} } @misc{SchottKretzschmarAckeretal.2014, author = {Schott, Juliane and Kretzschmar, Jerome and Acker, Margret and Eidner, Sascha and Kumke, Michael Uwe and Drobot, Bj{\"o}rn and Barkleit, Astrid and Taut, Steffen and Brendler, Vinzenz and Stumpf, Thorsten}, title = {Formation of a Eu(III) borate solid species from a weak Eu(III) borate complex in aqueous solution}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98774}, pages = {13}, year = {2014}, abstract = {In the presence of polyborates (detected by 11B-NMR) the formation of a weak Eu(III) borate complex (lg β11 ∼ 2, estimated) was observed by time-resolved laser-induced fluorescence spectroscopy (TRLFS). This complex is a precursor for the formation of a solid Eu(III) borate species. The formation of this solid in solution was investigated by TRLFS as a function of the total boron concentration: the lower the total boron concentration, the slower is the solid formation. The solid Eu(III) borate was characterized by IR spectroscopy, powder XRD and solid-state TRLFS. The determination of the europium to boron ratio portends the existence of pentaborate units in the amorphous solid.}, language = {en} } @misc{PlehnMegowMay2014, author = {Plehn, Thomas and Megow, J{\"o}rg and May, Volkhard}, title = {Concerted charge and energy transfer processes in a highly flexible fullerene-dye system}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98791}, pages = {10}, year = {2014}, abstract = {Photoinduced excitation energy transfer and accompanying charge separation are elucidated for a supramolecular system of a single fullerene covalently linked to six pyropheophorbide-a dye molecules. Molecular dynamics simulations are performed to gain an atomistic picture of the architecture and the surrounding solvent. Excitation energy transfer among the dye molecules and electron transfer from the excited dyes to the fullerene are described by a mixed quantum-classical version of the F{\"o}rster rate and the semiclassical Marcus rate, respectively. The mean characteristic time of energy redistribution lies in the range of 10 ps, while electron transfer proceeds within 150 ps. In between, on a 20 to 50 ps time-scale, conformational changes take place in the system. This temporal hierarchy of processes guarantees efficient charge separation, if the structure is exposed to a solvent. The fast energy transfer can adopt the dye excitation to the actual conformation. In this sense, the probability to achieve charge separation is large enough since any dominance of unfavorable conformations that exhibit a large dye-fullerene distance is circumvented. And the slow electron transfer may realize an averaging with respect to different conformations. To confirm the reliability of our computations, ensemble measurements on the charge separation dynamics are simulated and a very good agreement with the experimental data is obtained.}, language = {en} } @misc{WęcławskiTasiorHammannetal.2014, author = {Węcławski, Marek K. and Tasior, Mariusz and Hammann, Tommy and Cywiński, Piotr J. and Gryko, Daniel T.}, title = {From π-expanded coumarins to π-expanded pentacenes}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98822}, pages = {4}, year = {2014}, abstract = {The synthesis of two novel types of π-expanded coumarins has been developed. Modified Knoevenagel bis-condensation afforded 3,9-dioxa-perylene-2,8-diones. Subsequent oxidative aromatic coupling or light driven electrocyclization reaction led to dibenzo-1,7-dioxacoronene-2,8-dione. Unparalleled synthetic simplicity, straightforward purification and superb optical properties have the potential to bring these perylene and coronene analogs towards various applications.}, language = {en} } @misc{CiuciuCywiński2014, author = {Ciuciu, Adina I. and Cywiński, Piotr J.}, title = {Two-photon polymerization of hydrogels - versatile solutions to fabricate well-defined 3D structures}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-99450}, year = {2014}, abstract = {Hydrogels are cross-linked water-containing polymer networks that are formed by physical, ionic or covalent interactions. In recent years, they have attracted significant attention because of their unique physical properties, which make them promising materials for numerous applications in food and cosmetic processing, as well as in drug delivery and tissue engineering. Hydrogels are highly water-swellable materials, which can considerably increase in volume without losing cohesion, are biocompatible and possess excellent tissue-like physical properties, which can mimic in vivo conditions. When combined with highly precise manufacturing technologies, such as two-photon polymerization (2PP), well-defined three-dimensional structures can be obtained. These structures can become scaffolds for selective cell-entrapping, cell/drug delivery, sensing and prosthetic implants in regenerative medicine. 2PP has been distinguished from other rapid prototyping methods because it is a non-invasive and efficient approach for hydrogel cross-linking. This review discusses the 2PP-based fabrication of 3D hydrogel structures and their potential applications in biotechnology. A brief overview regarding the 2PP methodology and hydrogel properties relevant to biomedical applications is given together with a review of the most important recent achievements in the field.}, language = {en} } @misc{Peitsch2014, author = {Peitsch, Helmut}, title = {Die Vorgeschichte der ‚Brecht-Luk{\´a}cs-Debatte'}, series = {Postprints der Universit{\"a}t Potsdam : Philosophische Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Philosophische Reihe}, number = {113}, issn = {1866-8380}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94165}, pages = {33}, year = {2014}, abstract = {Werner Mittenzwei's article of 1967, the title of which coined the term "Brecht-Luk{\´a}cs-Debatte", is widely considered as a milestone in the development of East German literary criticism towards an "emancipation" from party politics. By placing Mittenzwei's contribution in the wider context of discussions about the literature of the GDR, within the SED and the writers' union as well as at international conferences, this article attempts to trace the emergence of "Umfunktionierung" both as a key term and in its official approval by the party.}, language = {de} } @misc{Berner2014, author = {Berner, Elisabeth}, title = {Albrecht Greule, J{\"o}rg Meier u. Arne Ziegler (Hgg.), Kanzleisprachenforschung. Ein internationales Handbuch / [rezensiert von] Elisabeth Berner}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94122}, pages = {654 -- 660}, year = {2014}, abstract = {Rezensiertes Werk: Albrecht Greule, J{\"o}rg Meier u. Arne Ziegler (Hgg.): Kanzleisprachenforschung. Ein internationales Handbuch. - Berlin u. Boston: de Gruyter 2012 - 680 S. - (XVI)}, language = {de} } @article{Ippolito2014, author = {Ippolito, Antonella}, title = {L' Inferno nel ciclo dei Contorni danteschi di Bonaventura Genelli}, series = {Dante e l' Arte}, volume = {2014}, journal = {Dante e l' Arte}, number = {1}, publisher = {Univ. Aut{\`o}noma de Barcelona}, address = {Bellaterra}, issn = {2385-5355}, pages = {241 -- 270}, year = {2014}, abstract = {Il ciclo dei trentasei Contorni danteschi del pittore e disegnatore berlinese Giovanni Bonaventura Genelli (1798-1868) rappresenta un interessante tentativo d'interpretare il testo della Commedia alla luce dei principi del classicismo tedesco, sull'esempio di Carstens e di Koch e, in parte di Flaxman da cui per{\`o} Genelli si distingue per continua ricerca volta ad esprimere la plasticit{\`a} delle forme. Caratteristica precipua delle sue illustrazioni {\`e} inoltre il ricorso continuo sia alla scultura antica che agli affreschi michelangioleschi della Sistina come repertorio iconografico. L'articolo approfondisce questi aspetti con particolare riferimento alle sedici tavole dedicate all'Inferno.}, language = {it} } @book{OPUS4-9618, title = {Otto Braun}, editor = {G{\"o}rtemaker, Manfred}, publisher = {Be.bra-Verl.}, address = {Berlin}, isbn = {978-3-89809-116-9}, publisher = {Universit{\"a}t Potsdam}, pages = {208}, year = {2014}, abstract = {Otto Braun war von 1921 bis 1932 mit kurzen Unterbrechungen Ministerpr{\"a}sident des Freistaates Preußen. Er war sowohl {\"u}berzeugter sozialer Demokrat als auch Preuße und betrieb eine entschlossene Reformpolitik, die zwar umstritten war, sich aber stets im Rahmen der Legalit{\"a}t bewegte. Die Grenzen dieses Ansatzes wurden am Ende der Weimarer Republik deutlich, als seine Regierung mit dem sogenannten »Preußenschlag« vom 20. Juli 1932 entmachtet wurde und Braun in Verkennung der neuen machtpolitischen Realit{\"a}ten vergeblich versuchte, mit legalen Maßnahmen dem illegalen Vorgehen der Reichsregierung entgegenzutreten.}, language = {de} } @incollection{Goertemaker2014, author = {G{\"o}rtemaker, Manfred}, title = {Zwischen Demokratie und Diktatur}, series = {Otto Braun : ein preußischer Demokrat}, booktitle = {Otto Braun : ein preußischer Demokrat}, publisher = {Be.bra-Verl.}, address = {Berlin}, isbn = {978-3-89809-116-9}, publisher = {Universit{\"a}t Potsdam}, pages = {11 -- 33}, year = {2014}, language = {de} } @incollection{ApostolowDetjens2014, author = {Apostolow, Markus and Detjens, Florian}, title = {Das wichtigste Postulat wahrer Demokratie}, series = {Otto Braun : ein preußischer Demokrat}, booktitle = {Otto Braun : ein preußischer Demokrat}, publisher = {Be.bra-Verl.}, address = {Berlin}, isbn = {978-3-89809-116-9}, publisher = {Universit{\"a}t Potsdam}, pages = {35 -- 57}, year = {2014}, language = {de} } @misc{CywińskiNonoCharbonniereetal.2014, author = {Cywiński, Piotr J. and Nono, Katia Nchimi and Charbonni{\`e}re, Lo{\"i}c J. and Hammann, Tommy and L{\"o}hmannsr{\"o}ben, Hans-Gerd}, title = {Photophysical evaluation of a new functional terbium complex in FRET-based time-resolved homogenous fluoroassays}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-95390}, pages = {6060 -- 6067}, year = {2014}, abstract = {A new functional luminescent lanthanide complex (LLC) has been synthesized with terbium as a central lanthanide ion and biotin as a functional moiety. Unlike in typical lanthanide complexes assembled via carboxylic moieties, in the presented complex, four phosphate groups are chelating the central lanthanide ion. This special chemical assembly enhances the complex stability in phosphate buffers conventionally used in biochemistry. The complex synthesis strategy and photophysical properties are described as well as the performance in time-resolved F{\"o}rster Resonance Energy Transfer (FRET) assays. In those assays, this biotin-LLC transferred energy either to acceptor organic dyes (Cy5 or AF680) labelled on streptavidin or to quantum dots (QD655 or QD705) surface-functionalised with streptavidins. The permanent spatial donor-acceptor proximity is assured through strong and stable biotin-streptavidin binding. The energy transfer is evidenced from the quenching observed in donor emission and from a decrease in donor luminescence decay, both associated with simultaneous increase in acceptor intensity and in the decay time. The dye-based assays are realised in TRIS and in PBS, whereas QD-based systems are studied in borate buffer. The delayed emission analysis allows for quantifying the recognition process and for auto-fluorescence-free detection, which is particularly relevant for application in bioanalysis. In accordance with F{\"o}rster theory, F{\"o}rster-radii (R0) were found to be around 60 {\AA} for organic dyes and around 105 {\AA} for QDs. The FRET efficiency (η) reached 80\% and 25\% for dye and QD acceptors, respectively. Physical donor-acceptor distances (r) have been determined in the range 45-60 {\AA} for organic dye acceptors, while for acceptor QDs between 120 {\AA} and 145 {\AA}. This newly synthesised biotin-LLC extends the class of highly sensitive analytical tools to be applied in the bioanalytical methods such as time-resolved fluoroimmunoassays (TR-FIA), luminescent imaging and biosensing.}, language = {en} } @phdthesis{Strauss2014, author = {Strauß, Jens}, title = {Organic carbon in ice-rich permafrost}, doi = {10.25932/publishup-7523}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-75236}, school = {Universit{\"a}t Potsdam}, pages = {XIII, 107, 102}, year = {2014}, abstract = {Permafrost, defined as ground that is frozen for at least two consecutive years, is a distinct feature of the terrestrial unglaciated Arctic. It covers approximately one quarter of the land area of the Northern Hemisphere (23,000,000 km²). Arctic landscapes, especially those underlain by permafrost, are threatened by climate warming and may degrade in different ways, including active layer deepening, thermal erosion, and development of rapid thaw features. In Siberian and Alaskan late Pleistocene ice-rich Yedoma permafrost, rapid and deep thaw processes (called thermokarst) can mobilize deep organic carbon (below 3 m depth) by surface subsidence due to loss of ground ice. Increased permafrost thaw could cause a feedback loop of global significance if its stored frozen organic carbon is reintroduced into the active carbon cycle as greenhouse gases, which accelerate warming and inducing more permafrost thaw and carbon release. To assess this concern, the major objective of the thesis was to enhance the understanding of the origin of Yedoma as well as to assess the associated organic carbon pool size and carbon quality (concerning degradability). The key research questions were: - How did Yedoma deposits accumulate? - How much organic carbon is stored in the Yedoma region? - What is the susceptibility of the Yedoma region's carbon for future decomposition? To address these three research questions, an interdisciplinary approach, including detailed field studies and sampling in Siberia and Alaska as well as methods of sedimentology, organic biogeochemistry, remote sensing, statistical analyses, and computational modeling were applied. To provide a panarctic context, this thesis additionally includes results both from a newly compiled northern circumpolar carbon database and from a model assessment of carbon fluxes in a warming Arctic. The Yedoma samples show a homogeneous grain-size composition. All samples were poorly sorted with a multi-modal grain-size distribution, indicating various (re-) transport processes. This contradicts the popular pure loess deposition hypothesis for the origin of Yedoma permafrost. The absence of large-scale grinding processes via glaciers and ice sheets in northeast Siberian lowlands, processes which are necessary to create loess as material source, suggests the polygenetic origin of Yedoma deposits. Based on the largest available data set of the key parameters, including organic carbon content, bulk density, ground ice content, and deposit volume (thickness and coverage) from Siberian and Alaskan study sites, this thesis further shows that deep frozen organic carbon in the Yedoma region consists of two distinct major reservoirs, Yedoma deposits and thermokarst deposits (formed in thaw-lake basins). Yedoma deposits contain ~80 Gt and thermokarst deposits ~130 Gt organic carbon, or a total of ~210 Gt. Depending on the approach used for calculating uncertainty, the range for the total Yedoma region carbon store is ±75 \% and ±20 \% for conservative single and multiple bootstrapping calculations, respectively. Despite the fact that these findings reduce the Yedoma region carbon pool by nearly a factor of two compared to previous estimates, this frozen organic carbon is still capable of inducing a permafrost carbon feedback to climate warming. The complete northern circumpolar permafrost region contains between 1100 and 1500 Gt organic carbon, of which ~60 \% is perennially frozen and decoupled from the short-term carbon cycle. When thawed and reintroduced into the active carbon cycle, the organic matter qualities become relevant. Furthermore, results from investigations into Yedoma and thermokarst organic matter quality studies showed that Yedoma and thermokarst organic matter exhibit no depth-dependent quality trend. This is evidence that after freezing, the ancient organic matter is preserved in a state of constant quality. The applied alkane and fatty-acid-based biomarker proxies including the carbon-preference and the higher-land-plant-fatty-acid indices show a broad range of organic matter quality and thus no significantly different qualities of the organic matter stored in thermokarst deposits compared to Yedoma deposits. This lack of quality differences shows that the organic matter biodegradability depends on different decomposition trajectories and the previous decomposition/incorporation history. Finally, the fate of the organic matter has been assessed by implementing deep carbon pools and thermokarst processes in a permafrost carbon model. Under various warming scenarios for the northern circumpolar permafrost region, model results show a carbon release from permafrost regions of up to ~140 Gt and ~310 Gt by the years 2100 and 2300, respectively. The additional warming caused by the carbon release from newly-thawed permafrost contributes 0.03 to 0.14°C by the year 2100. The model simulations predict that a further increase by the 23rd century will add 0.4°C to global mean surface air temperatures. In conclusion, Yedoma deposit formation during the late Pleistocene was dominated by water-related (alluvial/fluvial/lacustrine) as well as aeolian processes under periglacial conditions. The circumarctic permafrost region, including the Yedoma region, contains a substantial amount of currently frozen organic carbon. The carbon of the Yedoma region is well-preserved and therefore available for decomposition after thaw. A missing quality-depth trend shows that permafrost preserves the quality of ancient organic matter. When the organic matter is mobilized by deep degradation processes, the northern permafrost region may add up to 0.4°C to the global warming by the year 2300.}, language = {en} } @phdthesis{Kipp2014, author = {Kipp, Anna Patricia}, title = {Physiologische und Tumor-Assoziierte Funktionen von Selen und Selenoproteinen}, pages = {IV, 198}, year = {2014}, language = {de} } @phdthesis{Cao2014, author = {Cao, Xianyong}, title = {Vegetation and climate change in eastern continental Asia during the last 22 ka inferred from pollen data synthesis}, pages = {156}, year = {2014}, language = {en} } @book{OPUS4-7534, title = {Process design for natural scientists}, series = {Communications in computer and information science ; 500}, journal = {Communications in computer and information science ; 500}, editor = {Lambrecht, Anna-Lena and Margaria, Tizian}, publisher = {Springer}, address = {Wiesbaden}, isbn = {978-3-662-45005-5}, pages = {X, 251}, year = {2014}, abstract = {This book presents an agile and model-driven approach to manage scientific workflows. The approach is based on the Extreme Model Driven Design (XMDD) paradigm and aims at simplifying and automating the complex data analysis processes carried out by scientists in their day-to-day work. Besides documenting the impact the workflow modeling might have on the work of natural scientists, this book serves three major purposes: 1. It acts as a primer for practitioners who are interested to learn how to think in terms of services and workflows when facing domain-specific scientific processes. 2. It provides interesting material for readers already familiar with this kind of tools, because it introduces systematically both the technologies used in each case study and the basic concepts behind them. 3. As the addressed thematic field becomes increasingly relevant for lectures in both computer science and experimental sciences, it also provides helpful material for teachers that plan similar courses.}, language = {en} } @phdthesis{Giordano2014, author = {Giordano, Cristina}, title = {A neglected world: transition metal nitride and metal carbide based nanostructures}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-75375}, school = {Universit{\"a}t Potsdam}, pages = {191}, year = {2014}, abstract = {Potentiality of nanosized materials has been largely proved but a closer look shows that a significant percentage of this research is related to oxides and metals, while the number drastically drops for metallic ceramics, namely transition metal nitrides and metal carbides. The lack of related publications do not reflect their potential but rather the difficulties related to their synthesis as dense and defect-free structures, fundamental prerequisites for advanced mechanical applications. The present habilitation work aims to close the gap between preparation and processing, indicating novel synthetic pathways for a simpler and sustainable synthesis of transition metal nitride (MN) and carbide (MC) based nanostructures and easier processing thereafter. In spite of simplicity and reliability, the designed synthetic processes allow the production of functional materials, with the demanded size and morphology. The goal was achieved exploiting classical and less-classical precursors, ranging from common metal salts and molecules (e.g. urea, gelatin, agar, etc), to more exotic materials, such as leafs, filter paper and even wood. It was found that the choice of precursors and reaction conditions makes it possible to control chemical composition (going for instance from metal oxides to metal oxy-nitrides to metal nitrides, or from metal nitrides to metal carbides, up to quaternary systems), size (from 5 to 50 nm) and morphology (going from mere spherical nanoparticles to rod-like shapes, fibers, layers, meso-porous and hierarchical structures, etc). The nature of the mixed precursors also allows the preparation of metal nitrides/carbides based nanocomposites, thus leading to multifunctional materials (e.g. MN/MC@C, MN/MC@PILs, etc) but also allowing dispersion in liquid media. Control over composition, size and morphology is obtained with simple adjustment of the main route, but also coupling it with processes such as electrospin, aerosol spray, bio-templating, etc. Last but not least, the nature of the precursor materials also allows easy processing, including printing, coating, casting, film and thin layers preparation, etc). The designed routes are, concept-wise, similar and they all start by building up a secondary metal ion-N/C precursor network, which converts, upon heat treatment, into an intermediate "glass". This glass stabilizes the nascent nanoparticles during their nucleation and impairs their uncontrolled growth during the heat treatment (scheme 1). This way, one of the main problems related to the synthesis of MN/MC, i.e. the need of very high temperature, could also be overcome (from up to 2000°C, for classical synthesis, down to 700°C in the present cases). The designed synthetic pathways are also conceived to allow usage of non-toxic compounds and to minimize (or even avoid) post-synthesis purification, still bringing to phase pure and well-defined (crystalline) nanoparticles. This research aids to simplify the preparation of MN/MC, making these systems now readily available in suitable amounts both for fundamental and applied science. The prepared systems have been tested (in some cases for the first time) in many different fields, e.g. battery (MnN0.43@C shown a capacity stabilized at a value of 230 mAh/g, with coulombic efficiencies close to 100\%), as alternative magnetic materials (Fe3C nanoparticles were prepared with different size and therefore different magnetic behavior, superparamagnetic or ferromagnetic, showing a saturation magnetization value up to 130 emu/g, i.e. similar to the value expected for the bulk material), as filters and for the degradation of organic dyes (outmatching the performance of carbon), as catalysts (both as active phase but also as active support, leading to high turnover rate and, more interesting, to tunable selectivity). Furthermore, with this route, it was possible to prepare for the first time, to the best of our knowledge, well-defined and crystalline MnN0.43, Fe3C and Zn1.7GeN1.8O nanoparticles via bottom-up approaches. Once the synthesis of these materials can be made straightforward, any further modification, combination, manipulation, is in principle possible and new systems can be purposely conceived (e.g. hybrids, nanocomposites, ferrofluids, etc).}, language = {en} } @phdthesis{Schmidt2014, author = {Schmidt, Lukas}, title = {Aerosols and boundary layer structure over Arctic sea ice based on airborne lidar and dropsonde measurements}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-75076}, school = {Universit{\"a}t Potsdam}, pages = {vii, 98, xiii}, year = {2014}, abstract = {The atmosphere over the Arctic Ocean is strongly influenced by the distribution of sea ice and open water. Leads in the sea ice produce strong convective fluxes of sensible and latent heat and release aerosol particles into the atmosphere. They increase the occurrence of clouds and modify the structure and characteristics of the atmospheric boundary layer (ABL) and thereby influence the Arctic climate. In the course of this study aircraft measurements were performed over the western Arctic Ocean as part of the campaign PAMARCMIP 2012 of the Alfred Wegener Institute for Polar and Marine Research (AWI). Backscatter from aerosols and clouds within the lower troposphere and the ABL were measured with the nadir pointing Airborne Mobile Aerosol Lidar (AMALi) and dropsondes were launched to obtain profiles of meteorological variables. Furthermore, in situ measurements of aerosol properties, meteorological variables and turbulence were part of the campaign. The measurements covered a broad range of atmospheric and sea ice conditions. In this thesis, properties of the ABL over Arctic sea ice with a focus on the influence of open leads are studied based on the data from the PAMARCMIP campaign. The height of the ABL is determined by different methods that are applied to dropsonde and AMALi backscatter profiles. ABL heights are compared for different flights representing different conditions of the atmosphere and of sea ice and open water influence. The different criteria for ABL height that are applied show large variation in terms of agreement among each other, depending on the characteristics of the ABL and its history. It is shown that ABL height determination from lidar backscatter by methods commonly used under mid-latitude conditions is applicable to the Arctic ABL only under certain conditions. Aerosol or clouds within the ABL are needed as a tracer for ABL height detection from backscatter. Hence an aerosol source close to the surface is necessary, that is typically found under the present influence of open water and therefore convective conditions. However it is not always possible to distinguish residual layers from the actual ABL. Stable boundary layers are generally difficult to detect. To illustrate the complexity of the Arctic ABL and processes therein, four case studies are analyzed each of which represents a snapshot of the interplay between atmosphere and underlying sea ice or water surface. Influences of leads and open water on the aerosol and clouds within the ABL are identified and discussed. Leads are observed to cause the formation of fog and cloud layers within the ABL by humidity emission. Furthermore they decrease the stability and increase the height of the ABL and consequently facilitate entrainment of air and aerosol layers from the free troposphere.}, language = {en} } @phdthesis{Meissner2014, author = {Meissner, Sven}, title = {Implications of Microcystin Production in Microcystis aeruginosa PCC 7806}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-75199}, school = {Universit{\"a}t Potsdam}, pages = {VII, 141}, year = {2014}, abstract = {Cyanobacteria produce about 40 percent of the world's primary biomass, but also a variety of often toxic peptides such as microcystin. Mass developments, so called blooms, can pose a real threat to the drinking water supply in many parts of the world. This study aimed at characterizing the biological function of microcystin production in one of the most common bloom-forming cyanobacterium Microcystis aeruginosa. In a first attempt, the effect of elevated light intensity on microcystin production and its binding to cellular proteins was studied. Therefore, conventional microcystin quantification techniques were combined with protein-biochemical methods. RubisCO, the key enzyme for primary carbon fixation was a major microcystin interaction partner. High light exposition strongly stimulated microcystin-protein interactions. Up to 60 percent of the total cellular microcystin was detected bound to proteins, i.e. inaccessible for standard quantification procedures. Underestimation of total microcystin contents when neglecting the protein fraction was also demonstrated in field samples. Finally, an immuno-fluorescence based method was developed to identify microcystin producing cyanobacteria in mixed populations. The high light induced microcystin interaction with proteins suggested an impact of the secondary metabolite on the primary metabolism of Microcystis by e.g. modulating the activity of enzymes. For addressing that question, a comprehensive GC/MS-based approach was conducted to compare the accumulation of metabolites in the wild-type of Microcystis aeruginosa PCC 7806 and the microcystin deficient ΔmcyB mutant. From all 501 detected non-redundant metabolites 85 (17 percent) accumulated significantly different in either of both genotypes upon high light exposition. Accumulation of compatible solutes in the ΔmcyB mutant suggests a role of microcystin in fine-tuning the metabolic flow to prevent stress related to excess light, high oxygen concentration and carbon limitation. Co-analysis of the widely used model cyanobacterium Synechocystis PCC 6803 revealed profound metabolic differences between species of cyanobacteria. Whereas Microcystis channeled more resources towards carbohydrate synthesis, Synechocystis invested more in amino acids. These findings were supported by electron microscopy of high light treated cells and the quantification of storage compounds. While Microcystis accumulated mainly glycogen to about 8.5 percent of its fresh weight within three hours, Synechocystis produced higher amounts of cyanophycin. The results showed that the characterization of species-specific metabolic features should gain more attention with regard to the biotechnological use of cyanobacteria.}, language = {en} } @article{MetzlerJeonCherstvyetal.2014, author = {Metzler, Ralf and Jeon, Jae-Hyung and Cherstvy, Andrey G. and Barkai, Eli}, title = {Anomalous diffusion models and their properties}, series = {physical chemistry, chemical physics : PCCP}, volume = {2014}, journal = {physical chemistry, chemical physics : PCCP}, number = {16}, issn = {1463-9076}, doi = {10.1039/c4cp03465a}, pages = {24128 -- 24164}, year = {2014}, abstract = {Modern microscopic techniques following the stochastic motion of labelled tracer particles have uncovered significant deviations from the laws of Brownian motion in a variety of animate and inanimate systems. Such anomalous diffusion can have different physical origins, which can be identified from careful data analysis. In particular, single particle tracking provides the entire trajectory of the traced particle, which allows one to evaluate different observables to quantify the dynamics of the system under observation. We here provide an extensive overview over different popular anomalous diffusion models and their properties. We pay special attention to their ergodic properties, highlighting the fact that in several of these models the long time averaged mean squared displacement shows a distinct disparity to the regular, ensemble averaged mean squared displacement. In these cases, data obtained from time averages cannot be interpreted by the standard theoretical results for the ensemble averages. Here we therefore provide a comparison of the main properties of the time averaged mean squared displacement and its statistical behaviour in terms of the scatter of the amplitudes between the time averages obtained from different trajectories. We especially demonstrate how anomalous dynamics may be identified for systems, which, on first sight, appear to be Brownian. Moreover, we discuss the ergodicity breaking parameters for the different anomalous stochastic processes and showcase the physical origins for the various behaviours. This Perspective is intended as a guidebook for both experimentalists and theorists working on systems, which exhibit anomalous diffusion.}, language = {en} } @misc{MetzlerJeonCherstvyetal.2014, author = {Metzler, Ralf and Jeon, Jae-Hyung and Cherstvy, Andrey G. and Barkai, Eli}, title = {Anomalous diffusion models and their properties}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74448}, pages = {24128 -- 24164}, year = {2014}, abstract = {Modern microscopic techniques following the stochastic motion of labelled tracer particles have uncovered significant deviations from the laws of Brownian motion in a variety of animate and inanimate systems. Such anomalous diffusion can have different physical origins, which can be identified from careful data analysis. In particular, single particle tracking provides the entire trajectory of the traced particle, which allows one to evaluate different observables to quantify the dynamics of the system under observation. We here provide an extensive overview over different popular anomalous diffusion models and their properties. We pay special attention to their ergodic properties, highlighting the fact that in several of these models the long time averaged mean squared displacement shows a distinct disparity to the regular, ensemble averaged mean squared displacement. In these cases, data obtained from time averages cannot be interpreted by the standard theoretical results for the ensemble averages. Here we therefore provide a comparison of the main properties of the time averaged mean squared displacement and its statistical behaviour in terms of the scatter of the amplitudes between the time averages obtained from different trajectories. We especially demonstrate how anomalous dynamics may be identified for systems, which, on first sight, appear to be Brownian. Moreover, we discuss the ergodicity breaking parameters for the different anomalous stochastic processes and showcase the physical origins for the various behaviours. This Perspective is intended as a guidebook for both experimentalists and theorists working on systems, which exhibit anomalous diffusion.}, language = {en} } @article{WessigGerngrossPapeetal.2014, author = {Wessig, Pablo and Gerngroß, Maik and Pape, Simon and Bruhns, Philipp and Weber, Jens}, title = {Novel porous materials based on oligospiroketals (OSK)}, series = {RSC Advances : an international journal to further the chemical sciences}, volume = {2014}, journal = {RSC Advances : an international journal to further the chemical sciences}, number = {4}, issn = {2046-2069}, doi = {10.1039/c4ra04437a}, pages = {31123 -- 31129}, year = {2014}, abstract = {New porous materials based on covalently connected monomers are presented. The key step of the synthesis is an acetalisation reaction. In previous years we used acetalisation reactions extensively to build up various molecular rods. Based on this approach, investigations towards porous polymeric materials were conducted by us. Here we wish to present the results of these studies in the synthesis of 1D polyacetals and porous 3D polyacetals. By scrambling experiments with 1D acetals we could prove that exchange reactions occur between different building blocks (evidenced by MALDI-TOF mass spectrometry). Based on these results we synthesized porous 3D polyacetals under the same mild conditions.}, language = {en} } @misc{WessigGerngrossPapeetal.2014, author = {Wessig, Pablo and Gerngroß, Maik and Pape, Simon and Bruhns, Philipp and Weber, Jens}, title = {Novel porous materials based on oligospiroketals (OSK)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74466}, pages = {31123 -- 31129}, year = {2014}, abstract = {New porous materials based on covalently connected monomers are presented. The key step of the synthesis is an acetalisation reaction. In previous years we used acetalisation reactions extensively to build up various molecular rods. Based on this approach, investigations towards porous polymeric materials were conducted by us. Here we wish to present the results of these studies in the synthesis of 1D polyacetals and porous 3D polyacetals. By scrambling experiments with 1D acetals we could prove that exchange reactions occur between different building blocks (evidenced by MALDI-TOF mass spectrometry). Based on these results we synthesized porous 3D polyacetals under the same mild conditions.}, language = {en} } @article{ZamponiPenfoldNachtegaaletal.2014, author = {Zamponi, Flavio and Penfold, Thomas J. and Nachtegaal, Maarten and L{\"u}bcke, Andrea and Rittmann, Jochen and Milne, Chris J. and Chergui, Majed and van Bokhoven, Jeroen A.}, title = {Probing the dynamics of plasmon-excited hexanethiol-capped gold nanoparticles by picosecond X-ray absorption spectroscopy}, series = {physical chemistry, chemical physics : PCCP}, volume = {2014}, journal = {physical chemistry, chemical physics : PCCP}, number = {16}, issn = {1463-9076}, doi = {10.1039/c4cp03301a}, pages = {23157 -- 23163}, year = {2014}, abstract = {Picosecond X-ray absorption spectroscopy (XAS) is used to investigate the electronic and structural dynamics initiated by plasmon excitation of 1.8 nm diameter Au nanoparticles (NPs) functionalised with 1-hexanethiol. We show that 100 ps after photoexcitation the transient XAS spectrum is consistent with an 8\% expansion of the Au-Au bond length and a large increase in disorder associated with melting of the NPs. Recovery of the ground state occurs with a time constant of ∼1.8 ns, arising from thermalisation with the environment. Simulations reveal that the transient spectrum exhibits no signature of charge separation at 100 ps and allows us to estimate an upper limit for the quantum yield (QY) of this process to be <0.1.}, language = {en} } @misc{ZamponiPenfoldNachtegaaletal.2014, author = {Zamponi, Flavio and Penfold, Thomas J. and Nachtegaal, Maarten and L{\"u}bcke, Andrea and Rittmann, Jochen and Milne, Chris J. and Chergui, Majed and van Bokhoven, Jeroen A.}, title = {Probing the dynamics of plasmon-excited hexanethiol-capped gold nanoparticles by picosecond X-ray absorption spectroscopy}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74492}, pages = {23157 -- 23163}, year = {2014}, abstract = {Picosecond X-ray absorption spectroscopy (XAS) is used to investigate the electronic and structural dynamics initiated by plasmon excitation of 1.8 nm diameter Au nanoparticles (NPs) functionalised with 1-hexanethiol. We show that 100 ps after photoexcitation the transient XAS spectrum is consistent with an 8\% expansion of the Au-Au bond length and a large increase in disorder associated with melting of the NPs. Recovery of the ground state occurs with a time constant of ∼1.8 ns, arising from thermalisation with the environment. Simulations reveal that the transient spectrum exhibits no signature of charge separation at 100 ps and allows us to estimate an upper limit for the quantum yield (QY) of this process to be <0.1.}, language = {en} } @article{CherstvyChechkinMetzler2014, author = {Cherstvy, Andrey G. and Chechkin, Aleksei V. and Metzler, Ralf}, title = {Particle invasion, survival, and non-ergodicity in 2D diffusion processes with space-dependent diffusivity}, series = {Soft matter}, volume = {2014}, journal = {Soft matter}, number = {10}, publisher = {Royal Society of Chemistry}, issn = {2046-2069}, doi = {10.1039/c3sm52846d}, pages = {1591 -- 1601}, year = {2014}, abstract = {We study the thermal Markovian diffusion of tracer particles in a 2D medium with spatially varying diffusivity D(r), mimicking recently measured, heterogeneous maps of the apparent diffusion coefficient in biological cells. For this heterogeneous diffusion process (HDP) we analyse the mean squared displacement (MSD) of the tracer particles, the time averaged MSD, the spatial probability density function, and the first passage time dynamics from the cell boundary to the nucleus. Moreover we examine the non-ergodic properties of this process which are important for the correct physical interpretation of time averages of observables obtained from single particle tracking experiments. From extensive computer simulations of the 2D stochastic Langevin equation we present an in-depth study of this HDP. In particular, we find that the MSDs along the radial and azimuthal directions in a circular domain obey anomalous and Brownian scaling, respectively. We demonstrate that the time averaged MSD stays linear as a function of the lag time and the system thus reveals a weak ergodicity breaking. Our results will enable one to rationalise the diffusive motion of larger tracer particles such as viruses or submicron beads in biological cells.}, language = {en} } @misc{CherstvyChechkinMetzler2014, author = {Cherstvy, Andrey G. and Chechkin, Aleksei V. and Metzler, Ralf}, title = {Particle invasion, survival, and non-ergodicity in 2D diffusion processes with space-dependent diffusivity}, number = {168}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74021}, pages = {1591 -- 1601}, year = {2014}, abstract = {We study the thermal Markovian diffusion of tracer particles in a 2D medium with spatially varying diffusivity D(r), mimicking recently measured, heterogeneous maps of the apparent diffusion coefficient in biological cells. For this heterogeneous diffusion process (HDP) we analyse the mean squared displacement (MSD) of the tracer particles, the time averaged MSD, the spatial probability density function, and the first passage time dynamics from the cell boundary to the nucleus. Moreover we examine the non-ergodic properties of this process which are important for the correct physical interpretation of time averages of observables obtained from single particle tracking experiments. From extensive computer simulations of the 2D stochastic Langevin equation we present an in-depth study of this HDP. In particular, we find that the MSDs along the radial and azimuthal directions in a circular domain obey anomalous and Brownian scaling, respectively. We demonstrate that the time averaged MSD stays linear as a function of the lag time and the system thus reveals a weak ergodicity breaking. Our results will enable one to rationalise the diffusive motion of larger tracer particles such as viruses or submicron beads in biological cells.}, language = {en} } @article{MeyerMatissekMuelleretal.2014, author = {Meyer, S{\"o}ren and Matissek, M. and M{\"u}ller, Sandra Marie and Taleshi, M. S. and Ebert, Franziska and Francesconi, Kevin A. and Schwerdtle, Tanja}, title = {In vitro toxicological characterisation of three arsenic-containing hydrocarbons}, series = {Metallomics}, volume = {2014}, journal = {Metallomics}, number = {6}, issn = {1756-591X}, doi = {10.1039/c4mt00061g}, pages = {1023 -- 1033}, year = {2014}, abstract = {Arsenic-containing hydrocarbons are one group of fat-soluble organic arsenic compounds (arsenolipids) found in marine fish and other seafood. A risk assessment of arsenolipids is urgently needed, but has not been possible because of the total lack of toxicological data. In this study the cellular toxicity of three arsenic-containing hydrocarbons was investigated in cultured human bladder (UROtsa) and liver (HepG2) cells. Cytotoxicity of the arsenic-containing hydrocarbons was comparable to that of arsenite, which was applied as the toxic reference arsenical. A large cellular accumulation of arsenic, as measured by ICP-MS/MS, was observed after incubation of both cell lines with the arsenolipids. Moreover, the toxic mode of action shown by the three arsenic-containing hydrocarbons seemed to differ from that observed for arsenite. Evidence suggests that the high cytotoxic potential of the lipophilic arsenicals results from a decrease in the cellular energy level. This first in vitro based risk assessment cannot exclude a risk to human health related to the presence of arsenolipids in seafood, and indicates the urgent need for further toxicity studies in experimental animals to fully assess this possible risk.}, language = {en} } @misc{MeyerMatissekMuelleretal.2014, author = {Meyer, S{\"o}ren and Matissek, M. and M{\"u}ller, Sandra Marie and Taleshi, M. S. and Ebert, Franziska and Francesconi, Kevin A. and Schwerdtle, Tanja}, title = {In vitro toxicological characterisation of three arsenic-containing hydrocarbons}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74201}, pages = {1023 -- 1033}, year = {2014}, abstract = {Arsenic-containing hydrocarbons are one group of fat-soluble organic arsenic compounds (arsenolipids) found in marine fish and other seafood. A risk assessment of arsenolipids is urgently needed, but has not been possible because of the total lack of toxicological data. In this study the cellular toxicity of three arsenic-containing hydrocarbons was investigated in cultured human bladder (UROtsa) and liver (HepG2) cells. Cytotoxicity of the arsenic-containing hydrocarbons was comparable to that of arsenite, which was applied as the toxic reference arsenical. A large cellular accumulation of arsenic, as measured by ICP-MS/MS, was observed after incubation of both cell lines with the arsenolipids. Moreover, the toxic mode of action shown by the three arsenic-containing hydrocarbons seemed to differ from that observed for arsenite. Evidence suggests that the high cytotoxic potential of the lipophilic arsenicals results from a decrease in the cellular energy level. This first in vitro based risk assessment cannot exclude a risk to human health related to the presence of arsenolipids in seafood, and indicates the urgent need for further toxicity studies in experimental animals to fully assess this possible risk.}, language = {en} } @phdthesis{Schmitt2014, author = {Schmitt, Clemens Nikolaus Zeno}, title = {The role of protein metal complexes in the mechanics of Mytilus californianus byssal threads}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-74216}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 93}, year = {2014}, abstract = {Protein-metal coordination complexes are well known as active centers in enzymatic catalysis, and to contribute to signal transduction, gas transport, and to hormone function. Additionally, they are now known to contribute as load-bearing cross-links to the mechanical properties of several biological materials, including the jaws of Nereis worms and the byssal threads of marine mussels. The primary aim of this thesis work is to better understand the role of protein-metal cross-links in the mechanical properties of biological materials, using the mussel byssus as a model system. Specifically, the focus is on histidine-metal cross-links as sacrificial bonds in the fibrous core of the byssal thread (Chapter 4) and L-3,4-dihydroxyphenylalanine (DOPA)-metal bonds in the protective thread cuticle (Chapter 5). Byssal threads are protein fibers, which mussels use to attach to various substrates at the seashore. These relatively stiff fibers have the ability to extend up to about 100 \% strain, dissipating large amounts of mechanical energy from crashing waves, for example. Remarkably, following damage from cyclic loading, initial mechanical properties are subsequently recovered by a material-intrinsic self-healing capability. Histidine residues coordinated to transition metal ions in the proteins comprising the fibrous thread core have been suggested as reversible sacrificial bonds that contribute to self-healing; however, this remains to be substantiated in situ. In the first part of this thesis, the role of metal coordination bonds in the thread core was investigated using several spectroscopic methods. In particular, X-ray absorption spectroscopy (XAS) was applied to probe the coordination environment of zinc in Mytilus californianus threads at various stages during stretching and subsequent healing. Analysis of the extended X-ray absorption fine structure (EXAFS) suggests that tensile deformation of threads is correlated with the rupture of Zn-coordination bonds and that self-healing is connected with the reorganization of Zn-coordination bond topologies rather than the mere reformation of Zn-coordination bonds. These findings have interesting implications for the design of self-healing metallopolymers. The byssus cuticle is a protective coating surrounding the fibrous thread core that is both as hard as an epoxy and extensible up to 100 \% strain before cracking. It was shown previously that cuticle stiffness and hardness largely depend on the presence of Fe-DOPA coordination bonds. However, the byssus is known to concentrate a large variety of metals from seawater, some of which are also capable of binding DOPA (e.g. V). Therefore, the question arises whether natural variation of metal composition can affect the mechanical performance of the byssal thread cuticle. To investigate this hypothesis, nanoindentation and confocal Raman spectroscopy were applied to the cuticle of native threads, threads with metals removed (EDTA treated), and threads in which the metal ions in the native tissue were replaced by either Fe or V. Interestingly, replacement of metal ions with either Fe or V leads to the full recovery of native mechanical properties with no statistical difference between each other or the native properties. This likely indicates that a fixed number of metal coordination sites are maintained within the byssal thread cuticle - possibly achieved during thread formation - which may provide an evolutionarily relevant mechanism for maintaining reliable mechanics in an unpredictable environment. While the dynamic exchange of bonds plays a vital role in the mechanical behavior and self-healing in the thread core by allowing them to act as reversible sacrificial bonds, the compatibility of DOPA with other metals allows an inherent adaptability of the thread cuticle to changing circumstances. The requirements to both of these materials can be met by the dynamic nature of the protein-metal cross-links, whereas covalent cross-linking would fail to provide the adaptability of the cuticle and the self-healing of the core. In summary, these studies of the thread core and the thread cuticle serve to underline the important and dynamic roles of protein-metal coordination in the mechanical function of load-bearing protein fibers, such as the mussel byssus.}, language = {en} } @article{Groezinger2014, author = {Gr{\"o}zinger, Karl E.}, title = {J{\"u}dische Mystik}, series = {Handbuch zur Geschichte der Juden in Europa}, journal = {Handbuch zur Geschichte der Juden in Europa}, publisher = {Primus Verlag}, address = {Frankfurt a.M.}, isbn = {978-3-86312-363-5}, pages = {127 -- 137}, year = {2014}, abstract = {Das Handbuch umreißt das gesamte Spektrum der 2000j{\"a}hrigen Geschichte der Juden auf europ{\"a}ischem Boden. Wissenschaftler aus Europa und den USA haben ihre Forschungsergebnisse allgemein verst{\"a}ndlich aufbereitet mit dem Ziel, das Leben und Wirken der Juden, aber auch die ihnen entgegengebrachte Intoleranz und deren Ursachen aufzuzeigen. Der erste Teil konzentriert sich systematisch auf die L{\"a}nder und Regionen, in denen Juden siedelten bzw. nach Vertreibungen aus anderen Staaten Aufnahme fanden. Es wird sowohl auf die innere Entwicklung der j{\"u}dischen Gemeinden als auch auf die Beziehungen zwischen Juden und der sie umgebenden andersgl{\"a}ubigen Gesellschaft eingegangen. Der zweite Teil behandelt themenspezifische Schwerpunkte. Gemeindeleben und Religion, Familie und Stellung der Frau, kulturelle und geistige Entwicklung, aber auch Judenfeindschaft der sie umgebenden Gesellschaft - vom Antijudaismus bis zur Shoa und zum Antisemitismus der Gegenwart - werden in großangelegten Beitr{\"a}gen dargelegt.}, language = {de} } @misc{Karwat2014, type = {Master Thesis}, author = {Karwat, Alexandra}, title = {Entwicklung von Strategien zur Attraktivit{\"a}tssteigerung von Fortbildungen im Gesundheitsmanagement}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76151}, school = {Universit{\"a}t Potsdam}, pages = {VII, 45, XI}, year = {2014}, abstract = {Die Herausforderungen des 21. Jahrhunderts bewirken sowohl im Bundesministerium der Finanzen BMF als auch im franz{\"o}sischen Wirtschafts- und Finanzministerium MINEFI, der Gesunderhaltung der Besch{\"a}ftigten besondere Aufmerksamkeit zu schenken. Beide Verwaltungen sehen dabei die Referatsleiter/innen (RL) in der Pflicht und bieten deshalb Fortbildungen im Gesundheitsmanagement an. Das Interesse der RL f{\"u}r dieses Angebot ist bisher gering. Die vorliegende Masterarbeit untersucht die Ursachen f{\"u}r das in der deutschen und franz{\"o}sischen Finanzverwaltung unterschiedlich geringe Interesse und kommt zu dem Schluss, dass die Hemmnisse im MINEFI st{\"a}rker durch soziokulturelle und institutionelle Faktoren (republikanische Elitenbildung und Positionsmacht der jeweiligen Hierarchiestufe) bedingt sind, w{\"a}hrend im BMF institutionelle und pers{\"o}nlichkeitsspezifische Gr{\"u}nde zusammentreffen. Die Beh{\"o}rdenkultur beider Ministerien fokussiert die Arbeitsergebnisse der RL und l{\"a}sst ihr Verh{\"a}ltnis zu den Referatsangeh{\"o}rigen weitestgehend außer Acht. Eine Attraktivit{\"a}tssteigerung des Fortbildungsangebots im Gesundheitsmanagement setzt in beiden Verwaltungen voraus, Marketingstrategien innerhalb der Beh{\"o}rde zu etablieren, die die Wertigkeit des Gesundheitsmanagements im Organisationsgef{\"u}ge erh{\"o}hen und dadurch die RL st{\"a}rker motivieren. Dieser Change-Prozess erfordert Ausdauer und Geduld.}, language = {de} } @article{UnterbergLeffersHuebneretal.2014, author = {Unterberg, Marlies and Leffers, Larissa and H{\"u}bner, Florian and Humpf, Hans-Ulrich and Lepikhov, Konstantin and Walter, J{\"o}rn and Ebert, Franziska and Schwerdtle, Tanja}, title = {Toxicity of arsenite and thio-DMAV after long-term (21 days) incubation of human urothelial cells: cytotoxicity, genotoxicity and epigenetics}, series = {Toxicology Research}, volume = {3}, journal = {Toxicology Research}, number = {6}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2045-4538}, pages = {456 -- 464}, year = {2014}, abstract = {This study aims to further mechanistically understand toxic modes of action after chronic inorganic arsenic exposure. Therefore long-term incubation studies in cultured cells were carried out, to display chronically attained changes, which cannot be observed in the generally applied in vitro short-term incubation studies. Particularly, the cytotoxic, genotoxic and epigenetic effects of an up to 21 days incubation of human urothelial (UROtsa) cells with pico- to nanomolar concentrations of iAsIII and its metabolite thio-DMAV were compared. After 21 days of incubation, cytotoxic effects were strongly enhanced in the case of iAsIII and might partly be due to glutathione depletion and genotoxic effects on the chromosomal level. These results are in strong contrast to cells exposed to thio-DMAV. Thus, cells seemed to be able to adapt to this arsenical, as indicated among others by an increase in the cellular glutathione level. Most interestingly, picomolar concentrations of both iAsIII and thio-DMAV caused global DNA hypomethylation in UROtsa cells, which was quantified in parallel by 5-medC immunostaining and a newly established, reliable, high resolution mass spectrometry (HRMS)-based test system. This is the first time that epigenetic effects are reported for thio-DMAV; iAsIII induced epigenetic effects occur in at least 8000 fold lower concentrations as reported in vitro before. The fact that both arsenicals cause DNA hypomethylation at really low, exposure-relevant concentrations in human urothelial cells suggests that this epigenetic effect might contribute to inorganic arsenic induced carcinogenicity, which for sure has to be further investigated in future studies.}, language = {en} } @misc{UnterbergLeffersHuebneretal.2014, author = {Unterberg, Marlies and Leffers, Larissa and H{\"u}bner, Florian and Humpf, Hans-Ulrich and Lepikhov, Konstantin and Walter, J{\"o}rn and Ebert, Franziska and Schwerdtle, Tanja}, title = {Toxicity of arsenite and thio-DMAV after long-term (21 days) incubation of human urothelial cells: cytotoxicity, genotoxicity and epigenetics}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76239}, pages = {456 -- 464}, year = {2014}, abstract = {This study aims to further mechanistically understand toxic modes of action after chronic inorganic arsenic exposure. Therefore long-term incubation studies in cultured cells were carried out, to display chronically attained changes, which cannot be observed in the generally applied in vitro short-term incubation studies. Particularly, the cytotoxic, genotoxic and epigenetic effects of an up to 21 days incubation of human urothelial (UROtsa) cells with pico- to nanomolar concentrations of iAsIII and its metabolite thio-DMAV were compared. After 21 days of incubation, cytotoxic effects were strongly enhanced in the case of iAsIII and might partly be due to glutathione depletion and genotoxic effects on the chromosomal level. These results are in strong contrast to cells exposed to thio-DMAV. Thus, cells seemed to be able to adapt to this arsenical, as indicated among others by an increase in the cellular glutathione level. Most interestingly, picomolar concentrations of both iAsIII and thio-DMAV caused global DNA hypomethylation in UROtsa cells, which was quantified in parallel by 5-medC immunostaining and a newly established, reliable, high resolution mass spectrometry (HRMS)-based test system. This is the first time that epigenetic effects are reported for thio-DMAV; iAsIII induced epigenetic effects occur in at least 8000 fold lower concentrations as reported in vitro before. The fact that both arsenicals cause DNA hypomethylation at really low, exposure-relevant concentrations in human urothelial cells suggests that this epigenetic effect might contribute to inorganic arsenic induced carcinogenicity, which for sure has to be further investigated in future studies.}, language = {en} } @article{PalyulinAlaNissilaMetzler2014, author = {Palyulin, Vladimir V. and Ala-Nissila, Tapio and Metzler, Ralf}, title = {Polymer translocation: the first two decades and the recent diversification}, series = {Soft matter}, volume = {45}, journal = {Soft matter}, number = {10}, editor = {Metzler, Ralf}, publisher = {the Royal Society of Chemistry}, address = {Cambridge}, issn = {1744-683X}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76266}, pages = {9016 -- 9037}, year = {2014}, abstract = {Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous-infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis.}, language = {en} } @misc{PalyulinAlaNissilaMetzler2014, author = {Palyulin, Vladimir V. and Ala-Nissila, Tapio and Metzler, Ralf}, title = {Polymer translocation: the first two decades and the recent diversification}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76287}, pages = {9016 -- 9037}, year = {2014}, abstract = {Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous-infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis.}, language = {en} } @article{JeonChechkinMetzler2014, author = {Jeon, Jae-Hyung and Chechkin, Aleksei V. and Metzler, Ralf}, title = {Scaled Brownian motion: a paradoxical process with a time dependent diffusivity for the description of anomalous diffusion}, series = {Physical chemistry, chemical physics : PCCP}, volume = {30}, journal = {Physical chemistry, chemical physics : PCCP}, number = {16}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, doi = {10.1039/C4CP02019G}, pages = {15811 -- 15817}, year = {2014}, abstract = {Anomalous diffusion is frequently described by scaled Brownian motion (SBM){,} a Gaussian process with a power-law time dependent diffusion coefficient. Its mean squared displacement is ?x2(t)? [similar{,} equals] 2K(t)t with K(t) [similar{,} equals] t[small alpha]-1 for 0 < [small alpha] < 2. SBM may provide a seemingly adequate description in the case of unbounded diffusion{,} for which its probability density function coincides with that of fractional Brownian motion. Here we show that free SBM is weakly non-ergodic but does not exhibit a significant amplitude scatter of the time averaged mean squared displacement. More severely{,} we demonstrate that under confinement{,} the dynamics encoded by SBM is fundamentally different from both fractional Brownian motion and continuous time random walks. SBM is highly non-stationary and cannot provide a physical description for particles in a thermalised stationary system. Our findings have direct impact on the modelling of single particle tracking experiments{,} in particular{,} under confinement inside cellular compartments or when optical tweezers tracking methods are used.}, language = {en} } @phdthesis{Sachse2014, author = {Sachse, Rita}, title = {Biological membranes in cell-free systems}, pages = {111, XIX}, year = {2014}, language = {en} } @article{Berner2014, author = {Berner, Elisabeth}, title = {Von der Schwierigkeit, einer Stadt eine Kunsthalle zu schenken}, series = {Emotionalit{\"a}t im Text}, journal = {Emotionalit{\"a}t im Text}, number = {85}, publisher = {Stauffenburg}, address = {T{\"u}bingen}, isbn = {978-3-95809-506-9}, issn = {1430-4139}, pages = {231 -- 248}, year = {2014}, language = {de} } @article{Teske2014, author = {Teske, Daniel}, title = {Geocoder accuracy ranking}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {161 -- 174}, year = {2014}, abstract = {Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address.}, language = {en} } @article{Sens2014, author = {Sens, Henriette}, title = {Web-Based map generalization tools put to the test: a jABC workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {175 -- 185}, year = {2014}, abstract = {Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview.}, language = {en} } @article{Noack2014, author = {Noack, Franziska}, title = {CREADED: Colored-Relief application for digital elevation data}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {186 -- 199}, year = {2014}, abstract = {In the geoinformatics field, remote sensing data is often used for analyzing the characteristics of the current investigation area. This includes DEMs, which are simple raster grids containing grey scales representing the respective elevation values. The project CREADED that is presented in this paper aims at making these monochrome raster images more significant and more intuitively interpretable. For this purpose, an executable interactive model for creating a colored and relief-shaded Digital Elevation Model (DEM) has been designed using the jABC framework. The process is based on standard jABC-SIBs and SIBs that provide specific GIS functions, which are available as Web services, command line tools and scripts.}, language = {en} } @article{Respondek2014, author = {Respondek, Tobias}, title = {A workflow for computing potential areas for wind turbines}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, pages = {200 -- 215}, year = {2014}, abstract = {This paper describes the implementation of a workflow model for service-oriented computing of potential areas for wind turbines in jABC. By implementing a re-executable model the manual effort of a multi-criteria site analysis can be reduced. The aim is to determine the shift of typical geoprocessing tools of geographic information systems (GIS) from the desktop to the web. The analysis is based on a vector data set and mainly uses web services of the "Center for Spatial Information Science and Systems" (CSISS). This paper discusses effort, benefits and problems associated with the use of the web services.}, language = {en} } @article{Scheele2014, author = {Scheele, Lasse}, title = {Location analysis for placing artificial reefs}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {216 -- 228}, year = {2014}, abstract = {Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs.}, language = {en} } @article{Kind2014, author = {Kind, Josephine}, title = {Creation of topographic maps}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, pages = {229 -- 238}, year = {2014}, abstract = {Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs.}, language = {en} } @article{Holler2014, author = {Holler, Robin}, title = {GraffDok - a graffiti documentation application}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {239 -- 251}, year = {2014}, abstract = {GraffDok is an application helping to maintain an overview over sprayed images somewhere in a city. At the time of writing it aims at vandalism rather than at beautiful photographic graffiti in an underpass. Looking at hundreds of tags and scribbles on monuments, house walls, etc. it would be interesting to not only record them in writing but even make them accessible electronically, including images. GraffDok's workflow is simple and only requires an EXIF-GPS-tagged photograph of a graffito. It automatically determines its location by using reverse geocoding with the given GPS-coordinates and the Gisgraphy WebService. While asking the user for some more meta data, GraffDok analyses the image in parallel with this and tries to detect fore- and background - before extracting the drawing lines and make them stand alone. The command line based tool ImageMagick is used here as well as for accessing EXIF data. Any meta data is written to csv-files, which will stay easily accessible and can be integrated in TeX-files as well. The latter ones are converted to PDF at the end of the workflow, containing a table about all graffiti and a summary for each - including the generated characteristic graffiti pattern image.}, language = {en} } @article{Kosta2014, author = {Kosta, Peter}, title = {Die Tschechoslowakai seit 1918 : der rechtliche Status der Juden nach der Verfassung und dem Sprachengesetz von 1920}, series = {Handbuch zur Geschichte der Juden in Europa}, journal = {Handbuch zur Geschichte der Juden in Europa}, publisher = {Primus Verlag}, address = {Frankfurt a.M.}, isbn = {978-3-86312-363-5}, pages = {143 -- 150}, year = {2014}, language = {de} } @article{FranzJilge2014, author = {Franz, Norbert P. and Jilge, Wilfried}, title = {Rußland, Ukraine, Weißrußland, Baltikum (Lettland, Estland)}, series = {Handbuch zur Geschichte der Juden in Europa}, journal = {Handbuch zur Geschichte der Juden in Europa}, publisher = {Primus Verlag}, address = {Frankfurt a.M.}, isbn = {978-3-86312-363-5}, pages = {167 -- 227}, year = {2014}, language = {de} } @article{LamprechtWickert2014, author = {Lamprecht, Anna-Lena and Wickert, Alexander}, title = {The Course's SIB Libraries}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {30 -- 44}, year = {2014}, abstract = {This chapter gives a detailed description of the service framework underlying all the example projects that form the foundation of this book. It describes the different SIB libraries that we made available for the course "Process modeling in the natural sciences" to provide the functionality that was required for the envisaged applications. The students used these SIB libraries to realize their projects.}, language = {en} } @article{LamprechtWickertMargaria2014, author = {Lamprecht, Anna-Lena and Wickert, Alexander and Margaria, Tiziana}, title = {Lessons Learned}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {45 -- 64}, year = {2014}, abstract = {This chapter summarizes the experience and the lessons we learned concerning the application of the jABC as a framework for design and execution of scientific workflows. It reports experiences from the domain modeling (especially service integration) and workflow design phases and evaluates the resulting models statistically with respect to the SIB library and hierarchy levels.}, language = {en} } @article{Reso2014, author = {Reso, Judith}, title = {Protein Classification Workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {65 -- 72}, year = {2014}, abstract = {The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins.}, language = {en} } @article{Schulze2014, author = {Schulze, Gunnar}, title = {Workflow for rapid metagenome analysis}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {88 -- 100}, year = {2014}, abstract = {Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database}, language = {en} } @article{Vierheller2014, author = {Vierheller, Janine}, title = {Exploratory Data Analysis}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Axel Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {110 -- 126}, year = {2014}, abstract = {In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R.}, language = {en} } @article{Schuett2014, author = {Sch{\"u}tt, Christine}, title = {Identification of differentially expressed genes}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {127 -- 139}, year = {2014}, abstract = {With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment.}, language = {en} } @article{Kuntzsch2014, author = {Kuntzsch, Christian}, title = {Visualization of data transfer paths}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {140 -- 148}, year = {2014}, abstract = {A workflow for visualizing server connections using the Google Maps API was built in the jABC. It makes use of three basic services: An XML-based IP address geolocation web service, a command line tool and the Static Maps API. The result of the workflow is an URL leading to an image file of a map, showing server connections between a client and a target host.}, language = {en} } @article{Hibbe2014, author = {Hibbe, Marcel}, title = {Spotlocator - Guess Where the Photo Was Taken!}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {149 -- 160}, year = {2014}, abstract = {Spotlocator is a game wherein people have to guess the spots of where photos were taken. The photos of a defined area for each game are from panoramio.com. They are published at http://spotlocator. drupalgardens.com with an ID. Everyone can guess the photo spots by sending a special tweet via Twitter that contains the hashtag \#spotlocator, the guessed coordinates and the ID of the photo. An evaluation is published for all tweets. The players are informed about the distance to the real photo spots and the positions are shown on a map.}, language = {en} }