@article{KielMoehwaldBargheer2011, author = {Kiel, Mareike and M{\"o}hwald, Helmuth and Bargheer, Matias}, title = {Broadband measurements of the transient optical complex dielectric function of a nanoparticle/polymer composite upon ultrafast excitation}, series = {Physical review : B, Condensed matter and materials physics}, volume = {84}, journal = {Physical review : B, Condensed matter and materials physics}, number = {16}, publisher = {American Physical Society}, address = {College Park}, issn = {1098-0121}, doi = {10.1103/PhysRevB.84.165121}, pages = {6}, year = {2011}, abstract = {We determined experimentally the complex transient optical dielectric function of a well-characterized polyelectrolyte/gold-nanoparticle composite system over a broad spectral range upon short pulse laser excitation by simultaneously measuring the time-dependent reflectance and transmittance of white light pulses with femtosecond pump-probe spectroscopy. We extracted directly the ultrafast changes in the real and imaginary parts of the effective dielectric function, epsilon(eff)(r) (omega,t)and epsilon(eff)(i) (omega,t), from the experiment. This complete experimental set of information on the time-dependent complex dielectric function challenges theories modeling the transient dielectric function of gold particles and the effective medium.}, language = {en} } @article{ActisAgnettaAharonianetal.2011, author = {Actis, M. and Agnetta, G. and Aharonian, Felix A. and Akhperjanian, A. G. and Aleksic, J. and Aliu, E. and Allan, D. and Allekotte, I. and Antico, F. and Antonelli, L. A. and Antoranz, P. and Aravantinos, A. and Arlen, T. and Arnaldi, H. and Artmann, S. and Asano, K. and Asorey, H. G. and Baehr, J. and Bais, A. and Baixeras, C. and Bajtlik, S. and Balis, D. and Bamba, A. and Barbier, C. and Barcelo, M. and Barnacka, Anna and Barnstedt, J{\"u}rgen and de Almeida, U. Barres and Barrio, J. A. and Basso, S. and Bastieri, D. and Bauer, C. and Becerra Gonzalez, J. and Becherini, Yvonne and Bechtol, K. C. and Becker, J. and Beckmann, Volker and Bednarek, W. and Behera, B. and Beilicke, M. and Belluso, M. and Benallou, M. and Benbow, W. and Berdugo, J. and Berger, K. and Bernardino, T. and Bernl{\"o}hr, K. and Biland, A. and Billotta, S. and Bird, T. and Birsin, E. and Bissaldi, E. and Blake, S. and Blanch Bigas, O. and Bobkov, A. A. and Bogacz, L. and Bogdan, M. and Boisson, Catherine and Boix Gargallo, J. and Bolmont, J. and Bonanno, G. and Bonardi, A. and Bonev, T. and Borkowski, Janett and Botner, O. and Bottani, A. and Bourgeat, M. and Boutonnet, C. and Bouvier, A. and Brau-Nogue, S. and Braun, I. and Bretz, T. and Briggs, M. S. and Brun, Pierre and Brunetti, L. and Buckley, H. and Bugaev, V. and Buehler, R. and Bulik, Tomasz and Busetto, G. and Buson, S. and Byrum, K. and Cailles, M. and Cameron, R. A. and Canestrari, R. and Cantu, S. and Carmona, E. and Carosi, A. and Carr, John and Carton, P. H. and Casiraghi, M. and Castarede, H. and Catalano, O. and Cavazzani, S. and Cazaux, S. and Cerruti, B. and Cerruti, M. and Chadwick, M. and Chiang, J. and Chikawa, M. and Cieslar, M. and Ciesielska, M. and Cillis, A. N. and Clerc, C. and Colin, P. and Colome, J. and Compin, M. and Conconi, P. and Connaughton, V. and Conrad, Jan and Contreras, J. L. and Coppi, P. and Corlier, M. and Corona, P. and Corpace, O. and Corti, D. and Cortina, J. and Costantini, H. and Cotter, G. and Courty, B. and Couturier, S. and Covino, S. and Croston, J. and Cusumano, G. and Daniel, M. K. and Dazzi, F. and Deangelis, A. and de Cea del Pozo, E. and Dal Pino, E. M. de Gouveia and de Jager, O. and de la Calle Perez, I. and De La Vega, G. and De Lotto, B. and de Naurois, M. and Wilhelmi, E. de Ona and de Souza, V. and Decerprit, B. and Deil, C. and Delagnes, E. and Deleglise, G. and Delgado, C. and Dettlaff, T. and Di Paolo, A. and Di Pierro, F. and Diaz, C. and Dick, J. and Dickinson, H. and Digel, S. W. and Dimitrov, D. and Disset, G. and Djannati-Ata{\"i}, A. and Doert, M. and Domainko, W. and Dorner, D. and Doro, M. and Dournaux, J. -L. and Dravins, D. and Drury, L. and Dubois, F. and Dubois, R. and Dubus, G. and Dufour, C. and Durand, D. and Dyks, J. and Dyrda, M. and Edy, E. and Egberts, Kathrin and Eleftheriadis, C. and Elles, S. and Emmanoulopoulos, D. and Enomoto, R. and Ernenwein, J. -P. and Errando, M. and Etchegoyen, A. and Falcone, A. D. and Farakos, K. and Farnier, C. and Federici, S. and Feinstein, F. and Ferenc, D. and Fillin-Martino, E. and Fink, D. and Finley, C. and Finley, J. 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J. and Hassan, T. and Haubold, T. and Hauser, M. and Hayashida, M. and Heller, R. and Henri, G. and Hermann, G. and Herrero, A. and Hinton, James Anthony and Hoffmann, D. and Hofmann, W. and Hofverberg, P. and Horns, D. and Hrupec, D. and Huan, H. and Huber, B. and Huet, J. -M. and Hughes, G. and Hultquist, K. and Humensky, T. B. and Huppert, J. -F. and Ibarra, A. and Illa, J. M. and Ingjald, J. and Inoue, S. and Inoue, Y. and Ioka, K. and Jablonski, C. and Jacholkowska, A. and Janiak, M. and Jean, P. and Jensen, H. and Jogler, T. and Jung, I. and Kaaret, P. and Kabuki, S. and Kakuwa, J. and Kalkuhl, C. and Kankanyan, R. and Kapala, M. and Karastergiou, A. and Karczewski, M. and Karkar, S. and Karlsson, N. and Kasperek, J. and Katagiri, H. and Katarzynski, K. and Kawanaka, N. and Kedziora, B. and Kendziorra, E. and Khelifi, B. and Kieda, D. and Kifune, T. and Kihm, T. and Klepser, S. and Kluzniak, W. and Knapp, J. and Knappy, A. 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C. and Maccarone, T. and Maier, G. and Majumdar, P. and Maltezos, S. and Malkiewicz, P. and Mana, C. and Manalaysay, A. and Maneva, G. and Mangano, A. and Manigot, P. and Marin, J. and Mariotti, M. and Markoff, S. and Martinez, G. and Martinez, M. and Mastichiadis, A. and Matsumoto, H. and Mattiazzo, S. and Mazin, D. and McComb, T. J. L. and McCubbin, N. and McHardy, I. and Medina, C. and Melkumyan, D. and Mendes, A. and Mertsch, P. and Meucci, M. and Michalowski, J. and Micolon, P. and Mineo, T. and Mirabal, N. and Mirabel, F. and Miranda, J. M. and Mirzoyan, R. and Mizuno, T. and Moal, B. and Moderski, R. and Molinari, E. and Monteiro, I. and Moralejo, A. and Morello, C. and Mori, K. and Motta, G. and Mottez, F. and Moulin, Emmanuel and Mukherjee, R. and Munar, P. and Muraishi, H. and Murase, K. and Murphy, A. Stj. and Nagataki, S. and Naito, T. and Nakamori, T. and Nakayama, K. and Naumann, C. L. and Naumann, D. and Nayman, P. and Nedbal, D. and Niedzwiecki, A. and Niemiec, J. and Nikolaidis, A. and Nishijima, K. and Nolan, S. J. and Nowak, N. and O'Brien, P. T. and Ochoa, I. and Ohira, Y. and Ohishi, M. and Ohka, H. and Okumura, A. and Olivetto, C. and Ong, R. A. and Orito, R. and Orr, M. and Osborne, J. P. and Ostrowski, M. and Otero, L. and Otte, A. N. and Ovcharov, E. and Oya, I. and Ozieblo, A. and Paiano, S. and Pallota, J. and Panazol, J. L. and Paneque, D. and Panter, M. and Paoletti, R. and Papyan, G. and Paredes, J. M. and Pareschi, G. and Parsons, R. D. and Arribas, M. Paz and Pedaletti, G. and Pepato, A. and Persic, M. and Petrucci, P. O. and Peyaud, B. and Piechocki, W. and Pita, S. and Pivato, G. and Platos, L. and Platzer, R. and Pogosyan, L. and Pohl, Martin and Pojmanski, G. and Ponz, J. 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D. and Sutcliffe, P. and Szanecki, M. and Szepieniec, T. and Szostek, A. and Szymkowiak, A. and Tagliaferri, G. and Tajima, H. and Takahashi, H. and Takahashi, K. and Takalo, L. and Takami, H. and Talbot, R. G. and Tam, P. H. and Tanaka, M. and Tanimori, T. and Tavani, M. and Tavernet, J. -P. and Tchernin, C. and Tejedor, L. A. and Telezhinsky, Igor O. and Temnikov, P. and Tenzer, C. and Terada, Y. and Terrier, R. and Teshima, M. and Testa, V. and Tibaldo, L. and Tibolla, O. and Tluczykont, M. and Peixoto, C. J. Todero and Tokanai, F. and Tokarz, M. and Toma, K. and Torres, D. F. and Tosti, G. and Totani, T. and Toussenel, F. and Vallania, P. and Vallejo, G. and van der Walt, J. and van Eldik, C. and Vandenbroucke, J. and Vankov, H. and Vasileiadis, G. and Vassiliev, V. V. and Vegas, I. and Venter, L. and Vercellone, S. and Veyssiere, C. and Vialle, J. P. and Videla, M. and Vincent, P. and Vink, J. and Vlahakis, N. and Vlahos, L. and Vogler, P. and Vollhardt, A. and Volpe, F. and Von Gunten, H. P. and Vorobiov, S. and Wagner, S. and Wagner, R. M. and Wagner, B. and Wakely, S. P. and Walter, P. and Walter, R. and Warwick, R. and Wawer, P. and Wawrzaszek, R. and Webb, N. and Wegner, P. and Weinstein, A. and Weitzel, Q. and Welsing, R. and Wetteskind, H. and White, R. and Wierzcholska, A. and Wilkinson, M. I. and Williams, D. A. and Winde, M. and Wischnewski, R. and Wisniewski, L. and Wolczko, A. and Wood, M. and Xiong, Q. and Yamamoto, T. and Yamaoka, K. and Yamazaki, R. and Yanagita, S. and Yoffo, B. and Yonetani, M. and Yoshida, A. and Yoshida, T. and Yoshikoshi, T. and Zabalza, V. and Zagdanski, A. and Zajczyk, A. and Zdziarski, A. and Zech, Alraune and Zietara, K. and Ziolkowski, P. and Zitelli, V. and Zychowski, P.}, title = {Design concepts for the Cherenkov Telescope Array CTA an advanced facility for ground-based high-energy gamma-ray astronomy}, series = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis}, volume = {32}, journal = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis}, number = {3}, publisher = {Springer}, address = {Dordrecht}, organization = {CTA Consortium}, issn = {0922-6435}, doi = {10.1007/s10686-011-9247-0}, pages = {193 -- 316}, year = {2011}, abstract = {Ground-based gamma-ray astronomy has had a major breakthrough with the impressive results obtained using systems of imaging atmospheric Cherenkov telescopes. Ground-based gamma-ray astronomy has a huge potential in astrophysics, particle physics and cosmology. CTA is an international initiative to build the next generation instrument, with a factor of 5-10 improvement in sensitivity in the 100 GeV-10 TeV range and the extension to energies well below 100 GeV and above 100 TeV. CTA will consist of two arrays (one in the north, one in the south) for full sky coverage and will be operated as open observatory. The design of CTA is based on currently available technology. This document reports on the status and presents the major design concepts of CTA.}, language = {en} } @article{WinkelmannMartinHaseloffetal.2011, author = {Winkelmann, Ricarda and Martin, Maria A. and Haseloff, Monika and Albrecht, Torsten and Bueler, Ed and Khroulev, C. and Levermann, Anders}, title = {The Potsdam parallel ice sheet model (PISM-PIK) - Part 1: Model description}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {5}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-5-715-2011}, pages = {715 -- 726}, year = {2011}, abstract = {We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011).}, language = {en} } @article{MartinWinkelmannHaseloffetal.2011, author = {Martin, Maria A. and Winkelmann, Ricarda and Haseloff, M. and Albrecht, Tanja and Bueler, Ed and Khroulev, C. and Levermann, Anders}, title = {The Potsdam parallel ice sheet model (PISM-PIK) - Part 2: Dynamic equilibrium simulation of the Antarctic ice sheet}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {5}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-5-727-2011}, pages = {727 -- 740}, year = {2011}, abstract = {We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK). The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model.}, language = {en} } @article{AlbrechtMartinHaseloffetal.2011, author = {Albrecht, Tanja and Martin, M. and Haseloff, M. and Winkelmann, Ricarda and Levermann, Anders}, title = {Parameterization for subgrid-scale motion of ice-shelf calving fronts}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {5}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {1}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-5-35-2011}, pages = {35 -- 44}, year = {2011}, abstract = {A parameterization for the motion of ice-shelf fronts on a Cartesian grid in finite-difference land-ice models is presented. The scheme prevents artificial thinning of the ice shelf at its edge, which occurs due to the finite resolution of the model. The intuitive numerical implementation diminishes numerical dispersion at the ice front and enables the application of physical boundary conditions to improve the calculation of stress and velocity fields throughout the ice-sheet-shelf system. Numerical properties of this subgrid modification are assessed in the Potsdam Parallel Ice Sheet Model (PISM-PIK) for different geometries in one and two horizontal dimensions and are verified against an analytical solution in a flow-line setup.}, language = {en} } @article{KarlowatzScharhagRahnenfuehreretal.2011, author = {Karlowatz, Ruth-Jessica and Scharhag, J{\"u}rgen and Rahnenfuehrer, J{\"o}rg and Schneider, Ulrich and Jakob, Ernst and Kindermann, Wilfried and Zang, Klaus Dieter}, title = {Polymorphisms in the IGF1 signalling pathway including the myostatin gene are associated with left ventricular mass in male athletes}, series = {British journal of sports medicine : the journal of sport and exercise medicine}, volume = {45}, journal = {British journal of sports medicine : the journal of sport and exercise medicine}, number = {1}, publisher = {BMJ Publ. Group}, address = {London}, issn = {0306-3674}, doi = {10.1136/bjsm.2008.050567}, pages = {36 -- 41}, year = {2011}, abstract = {Background Athlete's heart as an adaptation to long-time and intensive endurance training can vary considerably between individuals. Genetic polymorphisms in the cardiological relevant insulin-like growth factor 1 (IGF1) signalling pathway seem to have an essential influence on the extent of physiological hypertrophy. Objective Analysis of polymorphisms in the genes of IGF1, IGF1 receptor (IGF1R) and the negative regulator of the cardiac IGF1 signalling pathway, myostatin (MSTN), and their relation to left ventricular mass (LVM) of endurance athletes. Methods In 110 elite endurance athletes or athletes with a high amount of endurance training (75 males and 35 females) and 27 male controls, which were examined by echocardiographic imaging methods and ergometric exercise-testing, the genotypes of a cytosine-adenine repeat polymorphism in the promoter region of the IGF1 gene and a G/A substitution at position 3174 in the IGF1R gene were determined. Additionally, a mutation screen of the MSTN gene was performed. Results The polymorphisms in the IGF1 and the IGF1R gene showed a significant relation to the LVM for male (IGF1: p=0.003; IGF1R: p=0.01), but not for female athletes. The same applies to a previously unnoticed polymorphism in the 1 intron of the MSTN gene, whose deletion allele (AAA -> AA) appears to increase the myostatic effect (p=0.015). Moreover, combinations of the polymorphisms showed significant synergistic effects on the LVM of the male athletes. Conclusions The authors' results argue for the importance of polymorphisms in the IGF1 signalling pathway in combination with MSTN on the variant degree of physiological hypertrophy of male athletes.}, language = {en} } @inproceedings{LehmannTryggvadottirScheffleretal.2011, author = {Lehmann, Andreas and Tryggvadottir, Laufey and Scheffler, Christiane and Hermanussen, Michael}, title = {Menarcheal age and body height in Iceland in the last century}, series = {Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft f{\"u}r Anthropologie}, volume = {68}, booktitle = {Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft f{\"u}r Anthropologie}, number = {4}, publisher = {Schweizerbart}, address = {Stuttgart}, issn = {0003-5548}, pages = {507 -- 508}, year = {2011}, language = {en} } @article{DenzJurewicz2011, author = {Denz, Rebekka and Jurewicz, Grażyna}, title = {Ghetto : Space and Bordes in Judaism ; Editorial}, issn = {1614-6492}, year = {2011}, language = {en} } @article{OskinovaTodtIgnaceetal.2011, author = {Oskinova, Lidia M. and Todt, Helge Tobias and Ignace, Richard and Brown, John C. and Cassinelli, Joseph P. and Hamann, Wolf-Rainer}, title = {Early magnetic B-type stars X-ray emission and wind properties}, series = {Monthly notices of the Royal Astronomical Society}, volume = {416}, journal = {Monthly notices of the Royal Astronomical Society}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0035-8711}, doi = {10.1111/j.1365-2966.2011.19143.x}, pages = {1456 -- 1474}, year = {2011}, abstract = {We present a comprehensive study of X-ray emission by, and wind properties of, massive magnetic early B-type stars. Dedicated XMM-Newton observations were obtained for three early-type B-type stars, xi(1) CMa, V2052 Oph and zeta Cas, with recently discovered magnetic fields. We report the first detection of X-ray emission from V2052 Oph and zeta Cas. The latter is one the softest X-ray sources among the early-type stars, while the former is one of the X-ray faintest. The observations show that the X-ray spectra of our programme stars are quite soft with the bulk of X-ray emitting material having a temperature of about 1 MK. We compile the complete sample of early B-type stars with detected magnetic fields to date and existing X-ray measurements, in order to study whether the X-ray emission can be used as a general proxy for stellar magnetism. We find that the X-ray properties of early massive B-type magnetic stars are diverse, and that hard and strong X-ray emission does not necessarily correlate with the presence of a magnetic field, corroborating similar conclusions reached earlier for the classical chemically peculiar magnetic Bp-Ap stars. We analyse the ultraviolet (UV) spectra of five non-supergiant B stars with magnetic fields (tau Sco, beta Cep, xi(1) CMa, V2052 Oph and zeta Cas) by means of non-local thermodynamic equilibrium (non-LTE) iron-blanketed model atmospheres. The latter are calculated with the Potsdam Wolf-Rayet (PoWR) code, which treats the photosphere as well as the wind, and also accounts for X-rays. With the exception of t Sco, this is the first analysis of these stars by means of stellar wind models. Our models accurately fit the stellar photospheric spectra in the optical and the UV. The parameters of X-ray emission, temperature and flux are included in the model in accordance with observations. We confirm the earlier findings that the filling factors of X-ray emitting material are very high. Our analysis reveals that the magnetic early-type B stars studied here have weak winds with velocities not significantly exceeding upsilon(esc). The mass-loss rates inferred from the analysis of UV lines are significantly lower than predicted by hydrodynamically consistent models. We find that, although the X-rays strongly affect the ionization structure of the wind, this effect is not sufficient in reducing the total radiative acceleration. When the X-rays are accounted for at the intensity and temperatures observed, there is still sufficient radiative acceleration to drive a stronger mass-loss than we empirically infer from the UV spectral lines.}, language = {en} } @article{GagneFehonSavoyetal.2011, author = {Gagne, Marc and Fehon, Garrett and Savoy, Michael R. and Cohen, David H. and Townsley, Leisa K. and Broos, Patrick S. and Povich, Matthew S. and Corcoran, Michael F. and Walborn, Nolan R. and Evans, Nancy Remage and Moffat, Anthony F. J. and Naze, Yael and Oskinova, Lidia M.}, title = {Carina ob stars: x-ray signatures of wind shocks and magnetic FIELDS}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, volume = {194}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0067-0049}, doi = {10.1088/0067-0049/194/1/5}, pages = {26}, year = {2011}, abstract = {The Chandra Carina Complex contains 200 known O- and B-type stars. The Chandra survey detected 68 of the 70 O stars and 61 of 127 known B0-B3 stars. We have assembled a publicly available optical/X-ray database to identify OB stars that depart from the canonical L-X/L-bol relation or whose average X-ray temperatures exceed 1 keV. Among the single O stars with high kT we identify two candidate magnetically confined wind shock sources: Tr16-22, O8.5 V, and LS 1865, O8.5 V((f)). The O4 III(fc) star HD 93250 exhibits strong, hard, variable X-rays, suggesting that it may be a massive binary with a period of > 30 days. The visual O2 If* binary HD 93129A shows soft 0.6 keV and hard 1.9 keV emission components, suggesting embedded wind shocks close to the O2 If* Aa primary and colliding wind shocks between Aa and Ab. Of the 11 known O-type spectroscopic binaries, the long orbital-period systems HD 93343, HD 93403, and QZ Car have higher shock temperatures than short-period systems such as HD 93205 and FO 15. Although the X-rays from most B stars may be produced in the coronae of unseen, low-mass pre-main-sequence companions, a dozen B stars with high L-X cannot be explained by a distribution of unseen companions. One of these, SS73 24 in the Treasure Chest cluster, is a new candidate Herbig Be star.}, language = {en} } @article{EvansDeGioiaEastwoodGagneetal.2011, author = {Evans, Nancy Remage and DeGioia-Eastwood, Kathleen and Gagne, Marc and Townsley, Leisa and Broos, Patrick S. and Wolk, Scott J. and Naze, Yael and Corcoran, Michael and Oskinova, Lidia M. and Moffat, Anthony F. J. and Wang, Junfeng and Walborn, Nolan R.}, title = {The search for low-mass companions of b stars in the Carina Nebula cluster trumpler 16}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, volume = {194}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0067-0049}, doi = {10.1088/0067-0049/194/1/13}, pages = {9}, year = {2011}, abstract = {We have developed lists of likely B3-A0 stars (called "late B" stars) in the young cluster Trumpler 16. The following criteria were used: location within 3' of eta Car, an appropriate V and B - V combination, and proper motion (where available). Color and magnitude cuts have been made assuming an E(B - V) = 0.55 mag +/- 0.1, which is a good approximation close to the center of Trumpler 16. These lists have been cross-correlated with X-ray sources found in the Chandra Carina Complex Project. Previous studies have shown that only very rarely (if at all) do late main-sequence B stars produce X-rays. We present evidence that the X-ray-detected sources are binaries with low-mass companions, since stars less massive than 1.4 M-circle dot are strong X-ray sources at the age of the cluster. Both the median X-ray energies and X-ray luminosities of these sources are in good agreement with values for typical low-mass coronal X-ray sources. We find that 39\% of the late B stars based on a list with proper motions have low-mass companions. Similarly, 32\% of a sample without proper motions have low-mass companions. We discuss the X-ray detection completeness. These results on low-mass companions of intermediate-mass stars are complementary to spectroscopic and interferometric results and probe new parameter space of low-mass companions at all separations. They do not support a steeply rising distribution of mass ratios to low masses for intermediate-mass (5 M-circle dot) primaries, such as would be found by random pairing from the initial mass function.}, language = {en} } @article{ParkinBroosTownsleyetal.2011, author = {Parkin, E. R. and Broos, Patrick S. and Townsley, L. K. and Pittard, J. M. and Moffat, Anthony F. J. and Naze, Y. and Rauw, G. and Oskinova, Lidia M. and Waldron, W. L.}, title = {X-RAY EMISSION FROM THE DOUBLE-BINARY OB-STAR SYSTEM QZ CAR (HD 93206)}, series = {ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES}, volume = {194}, journal = {ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES}, number = {1}, publisher = {IOP PUBLISHING LTD}, address = {BRISTOL}, issn = {0067-0049}, doi = {10.1088/0067-0049/194/1/8}, pages = {11}, year = {2011}, abstract = {X-ray observations of the double-binary OB-star system QZ Car (HD 93206) obtained with the Chandra X-ray Observatory over a period of roughly 2 years are presented. The respective orbits of systems A (O9.7 I+b2 v, P-A = 21 days) and B (O8 III+o9 v, P-B = 6 days) are reasonably well sampled by the observations, allowing the origin of the X-ray emission to be examined in detail. The X-ray spectra can be well fitted by an attenuated three-temperature thermal plasma model, characterized by cool, moderate, and hot plasma components at kT similar or equal to 0.2, 0.7, and 2 keV, respectively, and a circumstellar absorption of similar or equal to 0.2 x 10(22) cm(-2). Although the hot plasma component could be indicating the presence of wind-wind collision shocks in the system, the model fluxes calculated from spectral fits, with an average value of similar or equal to 7x10(-13) erg s(-1) cm(-2), do not show a clear correlation with the orbits of the two constituent binaries. A semi-analytical model of QZ Car reveals that a stable momentum balance may not be established in either system A or B. Yet, despite this, system B is expected to produce an observed X-ray flux well in excess of the observations. If one considers the wind of the O8 III star to be disrupted by mass transfer, the model and observations are in far better agreement, which lends support to the previous suggestion of mass transfer in the O8 III+o9 v binary. We conclude that the X-ray emission from QZ Car can be reasonably well accounted for by a combination of contributions mainly from the single stars and the mutual wind-wind collision between systems A and B.}, language = {en} } @article{OskinovaHamannCassinellietal.2011, author = {Oskinova, Lidia M. and Hamann, Wolf-Rainer and Cassinelli, Joseph P. and Brown, John C. and Todt, Helge Tobias}, title = {X-ray emission from massive stars with magnetic fields}, series = {Astronomische Nachrichten = Astronomical notes}, volume = {332}, journal = {Astronomische Nachrichten = Astronomical notes}, number = {9-10}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0004-6337}, doi = {10.1002/asna.201111602}, pages = {988 -- 993}, year = {2011}, abstract = {We investigate the connections between the magnetic fields and the X-ray emission from massive stars. Our study shows that the X-ray properties of known strongly magnetic stars are diverse: while some comply to the predictions of the magnetically confined wind model, others do not. We conclude that strong, hard, and variable X-ray emission may be a sufficient attribute of magnetic massive stars, but it is not a necessary one. We address the general properties of X-ray emission from "normal" massive stars, especially the long standing mystery about the correlations between the parameters of X-ray emission and fundamental stellar properties. The recent development in stellar structure modeling shows that small-scale surface magnetic fields may be common. We suggest a "hybrid" scenario which could explain the X-ray emission from massive stars by a combination of magnetic mechanisms on the surface and shocks in the stellar wind. The magnetic mechanisms and the wind shocks are triggered by convective motions in sub-photospheric layers. This scenario opens the door for a natural explanation of the well established correlation between bolometric and X-ray luminosities.}, language = {en} } @article{KholtyginFabrikaRusomarovetal.2011, author = {Kholtygin, A. F. and Fabrika, S. N. and Rusomarov, N. and Hamann, Wolf-Rainer and Kudryavtsev, D. O. and Oskinova, Lidia M. and Chountonov, G. A.}, title = {Line profile variability and magnetic fields of Wolf-Rayet stars: WR 135 and WR 136}, series = {ASTRONOMISCHE NACHRICHTEN}, volume = {332}, journal = {ASTRONOMISCHE NACHRICHTEN}, number = {9-10}, publisher = {WILEY-BLACKWELL}, address = {MALDEN}, issn = {0004-6337}, doi = {10.1002/asna.201111595}, pages = {1008 -- 1011}, year = {2011}, abstract = {We have obtained spectropolarimetric observations of two Wolf-Rayet stars, WR 135 (WC8) and WR 136 (WN6), with the 6-m Russian telescope in July 2009 and July 2010. We have studied the He II 5412 angstrom line region, which contains also the C IV 5469 angstrom line (for WR 135 only). Our goals were to investigate the rapid line-profile variability (LPV) in WR star spectra and to search for magnetic fields. We find small amplitude emission peaks moving from the center of He II line to its wings during the night in spectra of both stars. These emission peaks are likely a signature of accelerating clumps in the stellar wind. We obtained upper limits of the magnetic field strength: approximate to 200G for WR 135 and approximate to 50G for WR 136. (C) 2011 WILEY-VCH Verlag GmbH\&Co. KGaA, Weinheim}, language = {en} } @article{SchoellerHubrigIlyinetal.2011, author = {Schoeller, M. and Hubrig, Swetlana and Ilyin, Ilya and Kharchenko, N. V. and Briquet, Maryline and Gonzalez, J. F. and Langer, Norbert and Oskinova, Lidia M.}, title = {Magnetic field studies of massive main sequence stars}, series = {Astronomische Nachrichten = Astronomical notes}, volume = {332}, journal = {Astronomische Nachrichten = Astronomical notes}, number = {9-10}, publisher = {Wiley-Blackwell}, address = {Malden}, organization = {MAGORI Collaboration}, issn = {0004-6337}, doi = {10.1002/asna.201111606}, pages = {994 -- 997}, year = {2011}, abstract = {We report on the status of our spectropolarimetric observations of massive stars. During the last years, we have discovered magnetic fields in many objects of the upper main sequence, including Be stars, beta Cephei and Slowly Pulsating B stars, and a dozen O stars. Since the effects of those magnetic fields have been found to be substantial by recent models, we are looking into their impact on stellar rotation, pulsation, stellar winds, and chemical abundances. Accurate studies of the age, environment, and kinematic characteristics of the magnetic stars are also promising to give us new insight into the origin of the magnetic fields. Furthermore, longer time series of magnetic field measurements allow us to observe the temporal variability of the magnetic field and to deduce the stellar rotation period and the magnetic field geometry. Studies of the magnetic field in massive stars are indispensable to understand the conditions controlling the presence of those fields and their implications on the stellar physical parameters and evolution.}, language = {en} } @article{HubrigOskinovaSchoeller2011, author = {Hubrig, Swetlana and Oskinova, Lidia M. and Schoeller, M.}, title = {First detection of a magnetic field in the fast rotating runaway Oe star zeta Ophiuchi}, series = {Astronomische Nachrichten = Astronomical notes}, volume = {332}, journal = {Astronomische Nachrichten = Astronomical notes}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0004-6337}, doi = {10.1002/asna.201111516}, pages = {147 -- 152}, year = {2011}, abstract = {The star zeta Ophiuchi is one of the brightest massive stars in the northern hemisphere and was intensively studied in various wavelength domains. The currently available observational material suggests that certain observed phenomena are related to the presence of a magnetic field. We acquired spectropolarimetric observations of zeta Oph with FORS 1 mounted on the 8-m Kueyen telescope of the VLT to investigate if a magnetic field is indeed present in this star. Using all available absorption lines, we detect a mean longitudinal magnetic field < B(z)>(all) = 141 +/- 45 G, confirming the magnetic nature of this star. We review the X-ray properties of zeta Oph with the aim to understand whether the X-ray emission of zeta Oph is dominated by magnetic or by wind instability processes.}, language = {en} } @phdthesis{Thiele2011, author = {Thiele, Sven}, title = {Modeling biological systems with Answer Set Programming}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-59383}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Biology has made great progress in identifying and measuring the building blocks of life. The availability of high-throughput methods in molecular biology has dramatically accelerated the growth of biological knowledge for various organisms. The advancements in genomic, proteomic and metabolomic technologies allow for constructing complex models of biological systems. An increasing number of biological repositories is available on the web, incorporating thousands of biochemical reactions and genetic regulations. Systems Biology is a recent research trend in life science, which fosters a systemic view on biology. In Systems Biology one is interested in integrating the knowledge from all these different sources into models that capture the interaction of these entities. By studying these models one wants to understand the emerging properties of the whole system, such as robustness. However, both measurements as well as biological networks are prone to considerable incompleteness, heterogeneity and mutual inconsistency, which makes it highly non-trivial to draw biologically meaningful conclusions in an automated way. Therefore, we want to promote Answer Set Programming (ASP) as a tool for discrete modeling in Systems Biology. ASP is a declarative problem solving paradigm, in which a problem is encoded as a logic program such that its answer sets represent solutions to the problem. ASP has intrinsic features to cope with incompleteness, offers a rich modeling language and highly efficient solving technology. We present ASP solutions, for the analysis of genetic regulatory networks, determining consistency with observed measurements and identifying minimal causes for inconsistency. We extend this approach for computing minimal repairs on model and data that restore consistency. This method allows for predicting unobserved data even in case of inconsistency. Further, we present an ASP approach to metabolic network expansion. This approach exploits the easy characterization of reachability in ASP and its various reasoning methods, to explore the biosynthetic capabilities of metabolic reaction networks and generate hypotheses for extending the network. Finally, we present the BioASP library, a Python library which encapsulates our ASP solutions into the imperative programming paradigm. The library allows for an easy integration of ASP solution into system rich environments, as they exist in Systems Biology.}, language = {en} } @phdthesis{Gebser2011, author = {Gebser, Martin}, title = {Proof theory and algorithms for answer set programming}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-55425}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Answer Set Programming (ASP) is an emerging paradigm for declarative programming, in which a computational problem is specified by a logic program such that particular models, called answer sets, match solutions. ASP faces a growing range of applications, demanding for high-performance tools able to solve complex problems. ASP integrates ideas from a variety of neighboring fields. In particular, automated techniques to search for answer sets are inspired by Boolean Satisfiability (SAT) solving approaches. While the latter have firm proof-theoretic foundations, ASP lacks formal frameworks for characterizing and comparing solving methods. Furthermore, sophisticated search patterns of modern SAT solvers, successfully applied in areas like, e.g., model checking and verification, are not yet established in ASP solving. We address these deficiencies by, for one, providing proof-theoretic frameworks that allow for characterizing, comparing, and analyzing approaches to answer set computation. For another, we devise modern ASP solving algorithms that integrate and extend state-of-the-art techniques for Boolean constraint solving. We thus contribute to the understanding of existing ASP solving approaches and their interconnections as well as to their enhancement by incorporating sophisticated search patterns. The central idea of our approach is to identify atomic as well as composite constituents of a propositional logic program with Boolean variables. This enables us to describe fundamental inference steps, and to selectively combine them in proof-theoretic characterizations of various ASP solving methods. In particular, we show that different concepts of case analyses applied by existing ASP solvers implicate mutual exponential separations regarding their best-case complexities. We also develop a generic proof-theoretic framework amenable to language extensions, and we point out that exponential separations can likewise be obtained due to case analyses on them. We further exploit fundamental inference steps to derive Boolean constraints characterizing answer sets. They enable the conception of ASP solving algorithms including search patterns of modern SAT solvers, while also allowing for direct technology transfers between the areas of ASP and SAT solving. Beyond the search for one answer set of a logic program, we address the enumeration of answer sets and their projections to a subvocabulary, respectively. The algorithms we develop enable repetition-free enumeration in polynomial space without being intrusive, i.e., they do not necessitate any modifications of computations before an answer set is found. Our approach to ASP solving is implemented in clasp, a state-of-the-art Boolean constraint solver that has successfully participated in recent solver competitions. Although we do here not address the implementation techniques of clasp or all of its features, we present the principles of its success in the context of ASP solving.}, language = {en} } @article{DurzinskyMarwanOstrowskietal.2011, author = {Durzinsky, Markus and Marwan, Wolfgang and Ostrowski, Max and Schaub, Torsten and Wagler, Annegret}, title = {Automatic network reconstruction using ASP}, series = {Theory and practice of logic programming}, volume = {11}, journal = {Theory and practice of logic programming}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068411000287}, pages = {749 -- 766}, year = {2011}, abstract = {Building biological models by inferring functional dependencies from experimental data is an important issue in Molecular Biology. To relieve the biologist from this traditionally manual process, various approaches have been proposed to increase the degree of automation. However, available approaches often yield a single model only, rely on specific assumptions, and/or use dedicated, heuristic algorithms that are intolerant to changing circumstances or requirements in the view of the rapid progress made in Biotechnology. Our aim is to provide a declarative solution to the problem by appeal to Answer Set Programming (ASP) overcoming these difficulties. We build upon an existing approach to Automatic Network Reconstruction proposed by part of the authors. This approach has firm mathematical foundations and is well suited for ASP due to its combinatorial flavor providing a characterization of all models explaining a set of experiments. The usage of ASP has several benefits over the existing heuristic algorithms. First, it is declarative and thus transparent for biological experts. Second, it is elaboration tolerant and thus allows for an easy exploration and incorporation of biological constraints. Third, it allows for exploring the entire space of possible models. Finally, our approach offers an excellent performance, matching existing, special-purpose systems.}, language = {en} } @misc{GebserSchaubThieleetal.2011, author = {Gebser, Martin and Schaub, Torsten and Thiele, Sven and Veber, Philippe}, title = {Detecting inconsistencies in large biological networks with answer set programming}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {561}, issn = {1866-8372}, doi = {10.25932/publishup-41246}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412467}, pages = {38}, year = {2011}, abstract = {We introduce an approach to detecting inconsistencies in large biological networks by using answer set programming. To this end, we build upon a recently proposed notion of consistency between biochemical/genetic reactions and high-throughput profiles of cell activity. We then present an approach based on answer set programming to check the consistency of large-scale data sets. Moreover, we extend this methodology to provide explanations for inconsistencies by determining minimal representations of conflicts. In practice, this can be used to identify unreliable data or to indicate missing reactions.}, language = {en} } @article{MileoSchaubMericoetal.2011, author = {Mileo, Alessandra and Schaub, Torsten and Merico, Davide and Bisiani, Roberto}, title = {Knowledge-based multi-criteria optimization to support indoor positioning}, series = {Annals of mathematics and artificial intelligence}, volume = {62}, journal = {Annals of mathematics and artificial intelligence}, number = {3-4}, publisher = {Springer}, address = {Dordrecht}, issn = {1012-2443}, doi = {10.1007/s10472-011-9241-2}, pages = {345 -- 370}, year = {2011}, abstract = {Indoor position estimation constitutes a central task in home-based assisted living environments. Such environments often rely on a heterogeneous collection of low-cost sensors whose diversity and lack of precision has to be compensated by advanced techniques for localization and tracking. Although there are well established quantitative methods in robotics and neighboring fields for addressing these problems, they lack advanced knowledge representation and reasoning capacities. Such capabilities are not only useful in dealing with heterogeneous and incomplete information but moreover they allow for a better inclusion of semantic information and more general homecare and patient-related knowledge. We address this problem and investigate how state-of-the-art localization and tracking methods can be combined with Answer Set Programming, as a popular knowledge representation and reasoning formalism. We report upon a case-study and provide a first experimental evaluation of knowledge-based position estimation both in a simulated as well as in a real setting.}, language = {en} } @misc{GebserKaminskiSchaub2011, author = {Gebser, Martin and Kaminski, Roland and Schaub, Torsten}, title = {Complex optimization in answer set programming}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {554}, issn = {1866-8372}, doi = {10.25932/publishup-41243}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412436}, pages = {19}, year = {2011}, abstract = {Preference handling and optimization are indispensable means for addressing nontrivial applications in Answer Set Programming (ASP). However, their implementation becomes difficult whenever they bring about a significant increase in computational complexity. As a consequence, existing ASP systems do not offer complex optimization capacities, supporting, for instance, inclusion-based minimization or Pareto efficiency. Rather, such complex criteria are typically addressed by resorting to dedicated modeling techniques, like saturation. Unlike the ease of common ASP modeling, however, these techniques are rather involved and hardly usable by ASP laymen. We address this problem by developing a general implementation technique by means of meta-prpogramming, thus reusing existing ASP systems to capture various forms of qualitative preferences among answer sets. In this way, complex preferences and optimization capacities become readily available for ASP applications.}, language = {en} } @misc{DurzinskyMarwanOstrowskietal.2011, author = {Durzinsky, Markus and Marwan, Wolfgang and Ostrowski, Max and Schaub, Torsten and Wagler, Annegret}, title = {Automatic network reconstruction using ASP}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {560}, issn = {1866-8372}, doi = {10.25932/publishup-41241}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412419}, pages = {18}, year = {2011}, abstract = {Building biological models by inferring functional dependencies from experimental data is an important issue in Molecular Biology. To relieve the biologist from this traditionally manual process, various approaches have been proposed to increase the degree of automation. However, available approaches often yield a single model only, rely on specific assumptions, and/or use dedicated, heuristic algorithms that are intolerant to changing circumstances or requirements in the view of the rapid progress made in Biotechnology. Our aim is to provide a declarative solution to the problem by appeal to Answer Set Programming (ASP) overcoming these difficulties. We build upon an existing approach to Automatic Network Reconstruction proposed by part of the authors. This approach has firm mathematical foundations and is well suited for ASP due to its combinatorial flavor providing a characterization of all models explaining a set of experiments. The usage of ASP has several benefits over the existing heuristic algorithms. First, it is declarative and thus transparent for biological experts. Second, it is elaboration tolerant and thus allows for an easy exploration and incorporation of biological constraints. Third, it allows for exploring the entire space of possible models. Finally, our approach offers an excellent performance, matching existing, special-purpose systems.}, language = {en} } @article{GebserSchaubThieleetal.2011, author = {Gebser, Martin and Schaub, Torsten and Thiele, Sven and Veber, Philippe}, title = {Detecting inconsistencies in large biological networks with answer set programming}, series = {Theory and practice of logic programming}, volume = {11}, journal = {Theory and practice of logic programming}, number = {5-6}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068410000554}, pages = {323 -- 360}, year = {2011}, abstract = {We introduce an approach to detecting inconsistencies in large biological networks by using answer set programming. To this end, we build upon a recently proposed notion of consistency between biochemical/genetic reactions and high-throughput profiles of cell activity. We then present an approach based on answer set programming to check the consistency of large-scale data sets. Moreover, we extend this methodology to provide explanations for inconsistencies by determining minimal representations of conflicts. In practice, this can be used to identify unreliable data or to indicate missing reactions.}, language = {en} } @article{GebserKaminskiSchaub2011, author = {Gebser, Martin and Kaminski, Roland and Schaub, Torsten}, title = {Complex optimization in answer set programming}, series = {Theory and practice of logic programming}, volume = {11}, journal = {Theory and practice of logic programming}, number = {3}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068411000329}, pages = {821 -- 839}, year = {2011}, abstract = {Preference handling and optimization are indispensable means for addressing nontrivial applications in Answer Set Programming (ASP). However, their implementation becomes difficult whenever they bring about a significant increase in computational complexity. As a consequence, existing ASP systems do not offer complex optimization capacities, supporting, for instance, inclusion-based minimization or Pareto efficiency. Rather, such complex criteria are typically addressed by resorting to dedicated modeling techniques, like saturation. Unlike the ease of common ASP modeling, however, these techniques are rather involved and hardly usable by ASP laymen. We address this problem by developing a general implementation technique by means of meta-prpogramming, thus reusing existing ASP systems to capture various forms of qualitative preferences among answer sets. In this way, complex preferences and optimization capacities become readily available for ASP applications.}, language = {en} } @article{GebserKaufmannKaminskietal.2011, author = {Gebser, Martin and Kaufmann, Benjamin and Kaminski, Roland and Ostrowski, Max and Schaub, Torsten and Schneider, Marius}, title = {Potassco the Potsdam answer set solving collection}, series = {AI communications : AICOM ; the European journal on artificial intelligence}, volume = {24}, journal = {AI communications : AICOM ; the European journal on artificial intelligence}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0921-7126}, doi = {10.3233/AIC-2011-0491}, pages = {107 -- 124}, year = {2011}, abstract = {This paper gives an overview of the open source project Potassco, the Potsdam Answer Set Solving Collection, bundling tools for Answer Set Programming developed at the University of Potsdam.}, language = {en} } @article{NazeBroosOskinovaetal.2011, author = {Naze, Y. and Broos, Patrick S. and Oskinova, Lidia M. and Townsley, L. K. and Cohen, David H. and Corcoran, M. F. and Evans, N. R. and Gagne, M. and Moffat, Anthony F. J. and Pittard, J. M. and Rauw, G. and Ud-Doula, A. and Walborn, N. R.}, title = {GLOBAL X-RAY PROPERTIES OF THE O AND B STARS IN CARINA}, series = {ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES}, volume = {194}, journal = {ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES}, number = {1}, publisher = {IOP PUBLISHING LTD}, address = {BRISTOL}, issn = {0067-0049}, doi = {10.1088/0067-0049/194/1/7}, pages = {20}, year = {2011}, abstract = {The key empirical property of the X-ray emission from O stars is a strong correlation between the bolometric and X-ray luminosities. In the framework of the Chandra Carina Complex Project, 129 O and B stars have been detected as X-ray sources; 78 of those, all with spectral type earlier than B3, have enough counts for at least a rough X-ray spectral characterization. This leads to an estimate of the L-X-L-BOL ratio for an exceptional number of 60 O stars belonging to the same region and triples the number of Carina massive stars studied spectroscopically in X-rays. The derived log(L-X/L-BOL) is -7.26 for single objects, with a dispersion of only 0.21 dex. Using the properties of hot massive stars listed in the literature, we compare the X-ray luminosities of different types of objects. In the case of O stars, the L-X-L-BOL ratios are similar for bright and faint objects, as well as for stars of different luminosity classes or spectral types. Binaries appear only slightly harder and slightly more luminous in X-rays than single objects; the differences are not formally significant (at the 1\% level), except for the L-X-L-BOL ratio in the medium (1.0-2.5 keV) energy band. Weak-wind objects have similar X-ray luminosities but they display slightly softer spectra compared with "normal" O stars with the same bolometric luminosity. Discarding three overluminous objects, we find a very shallow trend of harder emission in brighter objects. The properties of the few B stars bright enough to yield some spectral information appear to be different overall (constant X-ray luminosities, harder spectra), hinting that another mechanism for producing X-rays, besides wind shocks, might be at work. However, it must be stressed that the earliest and X-ray brightest among these few detected objects are similar to the latest O stars, suggesting a possibly smooth transition between the two processes.}, language = {en} } @article{TownsleyBroosCorcoranetal.2011, author = {Townsley, Leisa K. and Broos, Patrick S. and Corcoran, Michael F. and Feigelson, Eric D. and Gagne, Marc and Montmerle, Thierry and Oey, M. S. and Smith, Nathan and Garmire, Gordon P. and Getman, Konstantin V. and Povich, Matthew S. and Evans, Nancy Remage and Naze, Yael and Parkin, E. R. and Preibisch, Thomas and Wang, Junfeng and Wou, Scott J. and Chu, You-Hua and Cohen, David H. and Gruendl, Robert A. and Hamaguchi, Kenji and King, Robert R. and Mac Low, Mordecai-Mark and McCaughrean, Mark J. and Moffat, Anthony F. J. and Oskinova, Lidia M. and Pittard, Julian M. and Stassun, Keivan G. and Ud-Doula, Asif and Walborn, Nolan R. and Waldron, Wayne L. and Churchwell, Ed and Nictiols, J. S. and Owocki, Stanley P. and Schulz, Norbert S.}, title = {An introduction to the chandra carina complex project}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, volume = {194}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Supplement series}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0067-0049}, doi = {10.1088/0067-0049/194/1/1}, pages = {28}, year = {2011}, abstract = {The Great Nebula in Carina provides an exceptional view into the violent massive star formation and feedback that typifies giant H II regions and starburst galaxies. We have mapped the Carina star-forming complex in X-rays, using archival Chandra data and a mosaic of 20 new 60 ks pointings using the Chandra X-ray Observatory's Advanced CCD Imaging Spectrometer, as a testbed for understanding recent and ongoing star formation and to probe Carina's regions of bright diffuse X-ray emission. This study has yielded a catalog of properties of > 14,000 X-ray point sources;> 9800 of them have multiwavelength counterparts. Using Chandra's unsurpassed X-ray spatial resolution, we have separated these point sources from the extensive, spatially-complex diffuse emission that pervades the region; X-ray properties of this diffuse emission suggest that it traces feedback from Carina's massive stars. In this introductory paper, we motivate the survey design, describe the Chandra observations, and present some simple results, providing a foundation for the 15 papers that follow in this special issue and that present detailed catalogs, methods, and science results.}, language = {en} } @article{GebserSabuncuSchaub2011, author = {Gebser, Martin and Sabuncu, Orkunt and Schaub, Torsten}, title = {An incremental answer set programming based system for finite model computation}, series = {AI communications : AICOM ; the European journal on artificial intelligence}, volume = {24}, journal = {AI communications : AICOM ; the European journal on artificial intelligence}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0921-7126}, doi = {10.3233/AIC-2011-0496}, pages = {195 -- 212}, year = {2011}, abstract = {We address the problem of Finite Model Computation (FMC) of first-order theories and show that FMC can efficiently and transparently be solved by taking advantage of a recent extension of Answer Set Programming (ASP), called incremental Answer Set Programming (iASP). The idea is to use the incremental parameter in iASP programs to account for the domain size of a model. The FMC problem is then successively addressed for increasing domain sizes until an answer set, representing a finite model of the original first-order theory, is found. We implemented a system based on the iASP solver iClingo and demonstrate its competitiveness by showing that it slightly outperforms the winner of the FNT division of CADE's 2009 Automated Theorem Proving (ATP) competition on the respective benchmark collection.}, language = {en} } @misc{GuerreroChuHamannetal.2011, author = {Guerrero, Mart{\´i}n A. and Chu, You-Hua and Hamann, Wolf-Rainer and Oskinova, Lidia M. and Sch{\"o}nberner, Detlef and Todt, Helge Tobias and Steffen, Matthias and Ruiz, Nieves and Gruendl, Robert A. and Blair, William P.}, title = {Ablation and wind mass-loading in the born-again planetary nebula A 30}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {563}, issn = {1866-8372}, doi = {10.25932/publishup-41234}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412341}, pages = {2}, year = {2011}, abstract = {We present XMM-Newton and Chandra observations of the born-again planetary nebula A 30. These X-ray observations reveal a bright unresolved source at the position of the central star whose X-ray luminosity exceeds by far the model expectations for photospheric emission and for shocks within the stellar wind. We suggest that a "born-again hot bubble" may be responsible for this X-ray emission. Diffuse X-ray emission associated with the petal-like features and one of the H-poor knots seen in the optical is also found. The weakened emission of carbon lines in the spectrum of the diffuse emission can be interpreted as the dilution of stellar wind by mass-loading or as the detection of material ejected during a very late thermal pulse.}, language = {en} } @misc{TodtPenaZuehlkeetal.2011, author = {Todt, Helge Tobias and Pe{\~n}a, Miriam and Z{\"u}hlke, Julia and Oskinova, Lidia M. and Hamann, Wolf-Rainer and Gr{\"a}fener, G{\"o}tz}, title = {Weak emission line central stars of planetary nebulae}, series = {Planetary Nebulae: an Eye to the Future}, journal = {Planetary Nebulae: an Eye to the Future}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413775}, pages = {2}, year = {2011}, abstract = {To understand the evolution and morphology of planetary nebulae, a detailed knowledge of their central stars is required. Central stars that exhibit emission lines in their spectra, indicating stellar mass-loss allow to study the evolution of planetary nebulae in action. Emission line central stars constitute about 10 \% of all central stars. Half of them are practically hydrogen-free Wolf-Rayet type central stars of the carbon sequence, [WC], that show strong emission lines of carbon and oxygen in their spectra. In this contribution we address the weak emission-lines central stars (wels). These stars are poorly analyzed and their hydrogen content is mostly unknown. We obtained optical spectra, that include the important Balmer lines of hydrogen, for four weak emission line central stars. We present the results of our analysis, provide spectral classification and discuss possible explanations for their formation and evolution.}, language = {en} } @article{FettkeNunesNesiFernieetal.2011, author = {Fettke, J{\"o}rg and Nunes-Nesi, Adriano and Fernie, Alisdair and Steup, Martin}, title = {Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana}, series = {Journal of plant physiology : biochemistry, physiology, molecular biology and biotechnology of plants}, volume = {168}, journal = {Journal of plant physiology : biochemistry, physiology, molecular biology and biotechnology of plants}, number = {12}, publisher = {Elsevier}, address = {Jena}, issn = {0176-1617}, doi = {10.1016/j.jplph.2010.09.008}, pages = {1415 -- 1425}, year = {2011}, abstract = {Plastidial degradation of transitory starch yields mainly maltose and glucose. Following the export into the cytosol, maltose acts as donor for a glucosyl transfer to cytosolic heteroglycans as mediated by a cytosolic transglucosidase (DPE2; EC 2.4.1.25) and the second glucosyl residue is liberated as glucose. The cytosolic phosphorylase (Pho2/PHS2; EC 2.4.1.1) also interacts with heteroglycans using the same intramolecular sites as DPE2. Thus, the two glucosyl transferases interconnect the cytosolic pools of glucose and glucose 1-phosphate. Due to the complex monosaccharide pattern, other heteroglycan-interacting proteins (Hips) are expected to exist. Identification of those proteins was approached by using two types of affinity chromatography. Heteroglycans from leaves of Arabidopsis thaliana (Col-0) covalently bound to Sepharose served as ligands that were reacted with a complex mixture of buffer-soluble proteins from Arabidopsis leaves. Binding proteins were eluted by sodium chloride. For identification, SDS-PAGE, tryptic digestion and MALDI-TOF analyses were applied. A strongly interacting polypeptide (approximately 40 kDa; designated as HIP1.3) was observed as product of locus At1g09340. Arabidopsis mutants deficient in HIP1.3 were reduced in growth and contained heteroglycans displaying an altered monosaccharide pattern. Wild type plants express HIP1.3 most strongly in leaves. As revealed by immuno fluorescence, HIP1.3 is located in the cytosol of mesophyll cells but mostly associated with the cytosolic surface of the chloroplast envelope membranes. In an HIP1.3-deficient mutant the immunosignal was undetectable. Metabolic profiles from leaves of this mutant and wild type plants as well were determined by GC-MS. As compared to the wild type control, more than ten metabolites, such as ascorbic acid, fructose, fructose bisphosphate, glucose, glycine, were elevated in darkness but decreased in the light. Although the biochemical function of HIP1.3 has not yet been elucidated, it is likely to possess an important function in the central carbon metabolism of higher plants.}, language = {en} } @article{RohrmannTohgeAlbaetal.2011, author = {Rohrmann, Johannes and Tohge, Takayuki and Alba, Rob and Osorio, Sonia and Caldana, Camila and McQuinn, Ryan and Arvidsson, Samuel Janne and van der Merwe, Margaretha J. and Riano-Pachon, Diego Mauricio and M{\"u}ller-R{\"o}ber, Bernd and Fei, Zhangjun and Nesi, Adriano Nunes and Giovannoni, James J. and Fernie, Alisdair}, title = {Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development}, series = {The plant journal}, volume = {68}, journal = {The plant journal}, number = {6}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0960-7412}, doi = {10.1111/j.1365-313X.2011.04750.x}, pages = {999 -- 1013}, year = {2011}, abstract = {Maturation of fleshy fruits such as tomato (Solanum lycopersicum) is subject to tight genetic control. Here we describe the development of a quantitative real-time PCR platform that allows accurate quantification of the expression level of approximately 1000 tomato transcription factors. In addition to utilizing this novel approach, we performed cDNA microarray analysis and metabolite profiling of primary and secondary metabolites using GC-MS and LC-MS, respectively. We applied these platforms to pericarp material harvested throughout fruit development, studying both wild-type Solanum lycopersicum cv. Ailsa Craig and the hp1 mutant. This mutant is functionally deficient in the tomato homologue of the negative regulator of the light signal transduction gene DDB1 from Arabidopsis, and is furthermore characterized by dramatically increased pigment and phenolic contents. We choose this particular mutant as it had previously been shown to have dramatic alterations in the content of several important fruit metabolites but relatively little impact on other ripening phenotypes. The combined dataset was mined in order to identify metabolites that were under the control of these transcription factors, and, where possible, the respective transcriptional regulation underlying this control. The results are discussed in terms of both programmed fruit ripening and development and the transcriptional and metabolic shifts that occur in parallel during these processes.}, language = {en} }