@phdthesis{Šustr2020, author = {Šustr, David}, title = {Molecular diffusion in polyelectrolyte multilayers}, doi = {10.25932/publishup-48903}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-489038}, school = {Universit{\"a}t Potsdam}, pages = {106}, year = {2020}, abstract = {Research on novel and advanced biomaterials is an indispensable step towards their applications in desirable fields such as tissue engineering, regenerative medicine, cell culture, or biotechnology. The work presented here focuses on such a promising material: polyelectrolyte multilayer (PEM) composed of hyaluronic acid (HA) and poly(L-lysine) (PLL). This gel-like polymer surface coating is able to accumulate (bio-)molecules such as proteins or drugs and release them in a controlled manner. It serves as a mimic of the extracellular matrix (ECM) in composition and intrinsic properties. These qualities make the HA/PLL multilayers a promising candidate for multiple bio-applications such as those mentioned above. The work presented aims at the development of a straightforward approach for assessment of multi-fractional diffusion in multilayers (first part) and at control of local molecular transport into or from the multilayers by laser light trigger (second part). The mechanism of the loading and release is governed by the interaction of bioactives with the multilayer constituents and by the diffusion phenomenon overall. The diffusion of a molecule in HA/PLL multilayers shows multiple fractions of different diffusion rate. Approaches, that are able to assess the mobility of molecules in such a complex system, are limited. This shortcoming motivated the design of a novel evaluation tool presented here. The tool employs a simulation-based approach for evaluation of the data acquired by fluorescence recovery after photobleaching (FRAP) method. In this approach, possible fluorescence recovery scenarios are primarily simulated and afterwards compared with the data acquired while optimizing parameters of a model until a sufficient match is achieved. Fluorescent latex particles of different sizes and fluorescein in an aqueous medium are utilized as test samples validating the analysis results. The diffusion of protein cytochrome c in HA/PLL multilayers is evaluated as well. This tool significantly broadens the possibilities of analysis of spatiotemporal FRAP data, which originate from multi-fractional diffusion, while striving to be widely applicable. This tool has the potential to elucidate the mechanisms of molecular transport and empower rational engineering of the drug release systems. The second part of the work focuses on the fabrication of such a spatiotemporarily-controlled drug release system employing the HA/PLL multilayer. This release system comprises different layers of various functionalities that together form a sandwich structure. The bottom layer, which serves as a reservoir, is formed by HA/PLL PEM deposited on a planar glass substrate. On top of the PEM, a layer of so-called hybrids is deposited. The hybrids consist of thermoresponsive poly(N-isopropylacrylamide) (PNIPAM) -based hydrogel microparticles with surface-attached gold nanorods. The layer of hybrids is intended to serve as a gate that controls the local molecular transport through the PEM-solution-interface. The possibility of stimulating the molecular transport by near-infrared (NIR) laser irradiation is being explored. From several tested approaches for the deposition of hybrids onto the PEM surface, the drying-based approach was identified as optimal. Experiments, that examine the functionality of the fabricated sandwich at elevated temperature, document the reversible volume phase transition of the PEM-attached hybrids while sustaining the sandwich stability. Further, the gold nanorods were shown to effectively absorb light radiation in the tissue- and cell-friendly NIR spectral region while transducing the energy of light into heat. The rapid and reversible shrinkage of the PEM-attached hybrids was thereby achieved. Finally, dextran was employed as a model transport molecule. It loads into the PEM reservoir in a few seconds with the partition constant of 2.4, while it spontaneously releases in a slower, sustained manner. The local laser irradiation of the sandwich, which contains the fluorescein isothiocyanate tagged dextran, leads to a gradual reduction of fluorescence intensity in the irradiated region. The release system fabricated employs renowned photoresponsivity of the hybrids in an innovative setting. The results of the research are a step towards a spatially-controlled on-demand drug release system that paves the way to spatiotemporally controlled drug release. The approaches developed in this work have the potential to elucidate the molecular dynamics in ECM and to foster engineering of multilayers with properties tuned to mimic the ECM. The work aims at spatiotemporal control over the diffusion of bioactives and their presentation to the cells.}, language = {en} } @techreport{ŠedovaČizmaziovaCook2021, type = {Working Paper}, author = {Šedov{\´a}, Barbora and Čizmaziov{\´a}, Lucia and Cook, Athene}, title = {A meta-analysis of climate migration literature}, series = {CEPA Discussion Papers}, journal = {CEPA Discussion Papers}, number = {29}, issn = {2628-653X}, doi = {10.25932/publishup-49982}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-499827}, pages = {83}, year = {2021}, abstract = {The large literature that aims to find evidence of climate migration delivers mixed findings. This meta-regression analysis i) summarizes direct links between adverse climatic events and migration, ii) maps patterns of climate migration, and iii) explains the variation in outcomes. Using a set of limited dependent variable models, we meta-analyze thus-far the most comprehensive sample of 3,625 estimates from 116 original studies and produce novel insights on climate migration. We find that extremely high temperatures and drying conditions increase migration. We do not find a significant effect of sudden-onset events. Climate migration is most likely to emerge due to contemporaneous events, to originate in rural areas and to take place in middle-income countries, internally, to cities. The likelihood to become trapped in affected areas is higher for women and in low-income countries, particularly in Africa. We uniquely quantify how pitfalls typical for the broader empirical climate impact literature affect climate migration findings. We also find evidence of different publication biases.}, language = {en} } @phdthesis{Šedova2022, author = {Šedov{\´a}, Barbora}, title = {Heterogeneous effects of weather and climate change on human migration}, doi = {10.25932/publishup-53673}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-536733}, school = {Universit{\"a}t Potsdam}, pages = {xix, 284}, year = {2022}, abstract = {While estimated numbers of past and future climate migrants are alarming, the growing empirical evidence suggests that the association between adverse climate-related events and migration is not universally positive. This dissertation seeks to advance our understanding of when and how climate migration emerges by analyzing heterogeneous climatic influences on migration in low- and middle-income countries. To this end, it draws on established economic theories of migration, datasets from physical and social sciences, causal inference techniques and approaches from systematic literature review. In three of its five chapters, I estimate causal effects of processes of climate change on inequality and migration in India and Sub-Saharan Africa. By employing interaction terms and by analyzing sub-samples of data, I explore how these relationships differ for various segments of the population. In the remaining two chapters, I present two systematic literature reviews. First, I undertake a comprehensive meta-regression analysis of the econometric climate migration literature to summarize general climate migration patterns and explain the conflicting findings. Second, motivated by the broad range of approaches in the field, I examine the literature from a methodological perspective to provide best practice guidelines for studying climate migration empirically. Overall, the evidence from this dissertation shows that climatic influences on human migration are highly heterogeneous. Whether adverse climate-related impacts materialize in migration depends on the socio-economic characteristics of the individual households, such as wealth, level of education, agricultural dependence or access to adaptation technologies and insurance. For instance, I show that while adverse climatic shocks are generally associated with an increase in migration in rural India, they reduce migration in the agricultural context of Sub-Saharan Africa, where the average wealth levels are much lower so that households largely cannot afford the upfront costs of moving. I find that unlike local climatic shocks which primarily enhance internal migration to cities and hence accelerate urbanization, shocks transmitted via agricultural producer prices increase migration to neighboring countries, likely due to the simultaneous decrease in real income in nearby urban areas. These findings advance our current understanding by showing when and how economic agents respond to climatic events, thus providing explicit contexts and mechanisms of climate change effects on migration in the future. The resulting collection of findings can guide policy interventions to avoid or mitigate any present and future welfare losses from climate change-related migration choices.}, language = {en} } @misc{ŚlęzakMetzlerMagdziarz2019, author = {Ślęzak, Jakub and Metzler, Ralf and Magdziarz, Marcin}, title = {Codifference can detect ergodicity breaking and non-Gaussianity}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {748}, doi = {10.25932/publishup-43617}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436178}, pages = {25}, year = {2019}, abstract = {We show that the codifference is a useful tool in studying the ergodicity breaking and non-Gaussianity properties of stochastic time series. While the codifference is a measure of dependence that was previously studied mainly in the context of stable processes, we here extend its range of applicability to random-parameter and diffusing-diffusivity models which are important in contemporary physics, biology and financial engineering. We prove that the codifference detects forms of dependence and ergodicity breaking which are not visible from analysing the covariance and correlation functions. We also discuss a related measure of dispersion, which is a nonlinear analogue of the mean squared displacement.}, language = {en} } @misc{ŚlęzakMetzlerMagdziarz2018, author = {Ślęzak, Jakub and Metzler, Ralf and Magdziarz, Marcin}, title = {Superstatistical generalised Langevin equation}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409315}, pages = {25}, year = {2018}, abstract = {Recent advances in single particle tracking and supercomputing techniques demonstrate the emergence of normal or anomalous, viscoelastic diffusion in conjunction with non-Gaussian distributions in soft, biological, and active matter systems. We here formulate a stochastic model based on a generalised Langevin equation in which non-Gaussian shapes of the probability density function and normal or anomalous diffusion have a common origin, namely a random parametrisation of the stochastic force. We perform a detailed analysis demonstrating how various types of parameter distributions for the memory kernel result in exponential, power law, or power-log law tails of the memory functions. The studied system is also shown to exhibit a further unusual property: the velocity has a Gaussian one point probability density but non-Gaussian joint distributions. This behaviour is reflected in the relaxation from a Gaussian to a non-Gaussian distribution observed for the position variable. We show that our theoretical results are in excellent agreement with stochastic simulations.}, language = {en} } @misc{ŚlęzakBurneckiMetzler2019, author = {Ślęzak, Jakub and Burnecki, Krzysztof and Metzler, Ralf}, title = {Random coefficient autoregressive processes describe Brownian yet non-Gaussian diffusion in heterogeneous systems}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {765}, issn = {1866-8372}, doi = {10.25932/publishup-43792}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-437923}, pages = {18}, year = {2019}, abstract = {Many studies on biological and soft matter systems report the joint presence of a linear mean-squared displacement and a non-Gaussian probability density exhibiting, for instance, exponential or stretched-Gaussian tails. This phenomenon is ascribed to the heterogeneity of the medium and is captured by random parameter models such as 'superstatistics' or 'diffusing diffusivity'. Independently, scientists working in the area of time series analysis and statistics have studied a class of discrete-time processes with similar properties, namely, random coefficient autoregressive models. In this work we try to reconcile these two approaches and thus provide a bridge between physical stochastic processes and autoregressive models.Westart from the basic Langevin equation of motion with time-varying damping or diffusion coefficients and establish the link to random coefficient autoregressive processes. By exploring that link we gain access to efficient statistical methods which can help to identify data exhibiting Brownian yet non-Gaussian diffusion.}, language = {en} } @misc{ĆwiekKupczyńskaAltmannArendetal.2016, author = {Ćwiek-Kupczyńska, Hanna and Altmann, Thomas and Arend, Daniel and Arnaud, Elizabeth and Chen, Dijun and Cornut, Guillaume and Fiorani, Fabio and Frohmberg, Wojciech and Junker, Astrid and Klukas, Christian and Lange, Matthias and Mazurek, Cezary and Nafissi, Anahita and Neveu, Pascal and van Oeveren, Jan and Pommier, Cyril and Poorter, Hendrik and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and Scholz, Uwe and van Schriek, Marco and Seren, {\"U}mit and Usadel, Bj{\"o}rn and Weise, Stephan and Kersey, Paul and Krajewski, Paweł}, title = {Measures for interoperability of phenotypic data}, series = {Plant methods}, journal = {Plant methods}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407299}, pages = {18}, year = {2016}, abstract = {Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time ‑consuming experiments, the findings can be fostered by reusing and combin‑ ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑ ment called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA ‑Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA ‑Tab ‑formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.}, language = {en} } @misc{UestuenBartetzkoBoernke2015, author = {{\"U}st{\"u}n, Suayib and Bartetzko, Verena and B{\"o}rnke, Frederik}, title = {The Xanthomonas effector XopJ triggers a conditional hypersensitive response upon treatment of N. benthamiana leaves with salicylic acid}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-406537}, pages = {11}, year = {2015}, abstract = {XopJ is a Xanthomonas type III effector protein that promotes bacterial virulence on susceptible pepper plants through the inhibition of the host cell proteasome and a resultant suppression of salicylic acid (SA) - dependent defense responses. We show here that Nicotiana benthamiana leaves transiently expressing XopJ display hypersensitive response (HR) -like symptoms when exogenously treated with SA. This apparent avirulence function of XopJ was further dependent on effector myristoylation as well as on an intact catalytic triad, suggesting a requirement of its enzymatic activity for HR-like symptom elicitation. The ability of XopJ to cause a HR-like symptom development upon SA treatment was lost upon silencing of SGT1 and NDR1, respectively, but was independent of EDS1 silencing, suggesting that XopJ is recognized by an R protein of the CC-NBS-LRR class. Furthermore, silencing of NPR1 abolished the elicitation of HR-like symptoms in XopJ expressing leaves after SA application. Measurement of the proteasome activity indicated that proteasome inhibition by XopJ was alleviated in the presence of SA, an effect that was not observed in NPR1 silenced plants. Our results suggest that XopJ - triggered HR-like symptoms are closely related to the virulence function of the effector and that XopJ follows a two-signal model in order to elicit a response in the non-host plant N. benthamiana.}, language = {en} } @phdthesis{Oeztuerk2018, author = {{\"O}zt{\"u}rk, Ugur}, title = {Learning more to predict landslides}, doi = {10.25932/publishup-42643}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426439}, school = {Universit{\"a}t Potsdam}, pages = {xxi, 104}, year = {2018}, abstract = {Landslides are frequent natural hazards in rugged terrain, when the resisting frictional force of the surface of rupture yields to the gravitational force. These forces are functions of geological and morphological factors, such as angle of internal friction, local slope gradient or curvature, which remain static over hundreds of years; whereas more dynamic triggering events, such as rainfall and earthquakes, compromise the force balance by temporarily reducing resisting forces or adding transient loads. This thesis investigates landslide distribution and orientation due to landslide triggers (e.g. rainfall) at different scales (6-4∙10^5 km^2) and aims to link rainfall movement with the landslide distribution. It additionally explores the local impacts of the extreme rainstorms on landsliding and the role of precursory stability conditions that could be induced by an earlier trigger, such as an earthquake. Extreme rainfall is a common landslide trigger. Although several studies assessed rainfall intensity and duration to study the distribution of thus triggered landslides, only a few case studies quantified spatial rainfall patterns (i.e. orographic effect). Quantifying the regional trajectories of extreme rainfall could aid predicting landslide prone regions in Japan. To this end, I combined a non-linear correlation metric, namely event synchronization, and radial statistics to assess the general pattern of extreme rainfall tracks over distances of hundreds of kilometers using satellite based rainfall estimates. Results showed that, although the increase in rainfall intensity and duration positively correlates with landslide occurrence, the trajectories of typhoons and frontal storms were insufficient to explain landslide distribution in Japan. Extreme rainfall trajectories inclined northwestwards and were concentrated along some certain locations, such as coastlines of southern Japan, which was unnoticed in the landslide distribution of about 5000 rainfall-triggered landslides. These landslides seemed to respond to the mean annual rainfall rates. Above mentioned findings suggest further investigation on a more local scale to better understand the mechanistic response of landscape to extreme rainfall in terms of landslides. On May 2016 intense rainfall struck southern Germany triggering high waters and landslides. The highest damage was reported at the Braunsbach, which is located on the tributary-mouth fan formed by the Orlacher Bach. Orlacher Bach is a ~3 km long creek that drains a catchment of about ~6 km^2. I visited this catchment in June 2016 and mapped 48 landslides along the creek. Such high landslide activity was not reported in the nearby catchments within ~3300 km^2, despite similar rainfall intensity and duration based on weather radar estimates. My hypothesis was that several landslides were triggered by rainfall-triggered flash floods that undercut hillslope toes along the Orlacher Bach. I found that morphometric features such as slope and curvature play an important role in landslide distribution on this micro scale study site (<10 km^2). In addition, the high number of landslides along the Orlacher Bach could also be boosted by accumulated damages on hillslopes due karst weathering over longer time scales. Precursory damages on hillslopes could also be induced by past triggering events that effect landscape evolution, but this interaction is hard to assess independently from the latest trigger. For example, an earthquake might influence the evolution of a landscape decades long, besides its direct impacts, such as landslides that follow the earthquake. Here I studied the consequences of the 2016 Kumamoto Earthquake (MW 7.1) that triggered some 1500 landslides in an area of ~4000 km^2 in central Kyushu, Japan. Topography, i.e. local slope and curvature, both amplified and attenuated seismic waves, thus controlling the failure mechanism of those landslides (e.g. progressive). I found that topography fails in explaining the distribution and the preferred orientation of the landslides after the earthquake; instead the landslides were concentrated around the northeast of the rupture area and faced mostly normal to the rupture plane. This preferred location of the landslides was dominated mainly by the directivity effect of the strike-slip earthquake, which is the propagation of wave energy along the fault in the rupture direction; whereas amplitude variations of the seismic radiation altered the preferred orientation. I suspect that the earthquake directivity and the asymmetry of seismic radiation damaged hillslopes at those preferred locations increasing landslide susceptibility. Hence a future weak triggering event, e.g. scattered rainfall, could further trigger landslides at those damaged hillslopes.}, language = {en} } @phdthesis{Oenel2008, author = {{\"O}nel, Hakan}, title = {Electron acceleration in a flare plasma via coronal circuits}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-29035}, school = {Universit{\"a}t Potsdam}, year = {2008}, abstract = {The Sun is a star, which due to its proximity has a tremendous influence on Earth. Since its very first days mankind tried to "understand the Sun", and especially in the 20th century science has uncovered many of the Sun's secrets by using high resolution observations and describing the Sun by means of models. As an active star the Sun's activity, as expressed in its magnetic cycle, is closely related to the sunspot numbers. Flares play a special role, because they release large energies on very short time scales. They are correlated with enhanced electromagnetic emissions all over the spectrum. Furthermore, flares are sources of energetic particles. Hard X-ray observations (e.g., by NASA's RHESSI spacecraft) reveal that a large fraction of the energy released during a flare is transferred into the kinetic energy of electrons. However the mechanism that accelerates a large number of electrons to high energies (beyond 20 keV) within fractions of a second is not understood yet. The thesis at hand presents a model for the generation of energetic electrons during flares that explains the electron acceleration based on real parameters obtained by real ground and space based observations. According to this model photospheric plasma flows build up electric potentials in the active regions in the photosphere. Usually these electric potentials are associated with electric currents closed within the photosphere. However as a result of magnetic reconnection, a magnetic connection between the regions of different magnetic polarity on the photosphere can establish through the corona. Due to the significantly higher electric conductivity in the corona, the photospheric electric power supply can be closed via the corona. Subsequently a high electric current is formed, which leads to the generation of hard X-ray radiation in the dense chromosphere. The previously described idea is modelled and investigated by means of electric circuits. For this the microscopic plasma parameters, the magnetic field geometry and hard X-ray observations are used to obtain parameters for modelling macroscopic electric components, such as electric resistors, which are connected with each other. This model demonstrates that such a coronal electric current is correlated with large scale electric fields, which can accelerate the electrons quickly up to relativistic energies. The results of these calculations are encouraging. The electron fluxes predicted by the model are in agreement with the electron fluxes deduced from the measured photon fluxes. Additionally the model developed in this thesis proposes a new way to understand the observed double footpoint hard X-ray sources.}, language = {en} } @misc{Zuellich2011, type = {Master Thesis}, author = {Z{\"u}llich, Gunda}, title = {Migration and development in Senegal : a system dynamics analysis of the feedback relationships}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-57836}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {This thesis investigates the reciprocal relationship between migration and development in Senegal. Therewith, it contributes to the debate as to whether migration in developing countries enhances or rather impedes the development process. Even though extensive and controversial discussions can be found in the scientific literature regarding the impact of migration on development, research has scarcely examined the feedback relationships between migration and development. Science however agrees with both the fact that migration affects development as well as that the level of development in a country determines migration behaviour. Thus, both variables are neither dependent nor independent, but endogenous variables influencing each other and producing behavioural pattern that cannot be investigated using a static and unidirectional approach. On account of this, the thesis studies the feedback mechanisms existing between migration and development and the behavioural pattern generated by the high interdependence in order to be able to draw conclusions concerning the impact of changes in migration behaviour on the development process. To explore these research questions, the study applies the computer simulation method 'System Dynamics' and amplifies the simulation model for national development planning called 'Threshold 21' (T21), representing development processes endogenously and integrating economic, social and environmental aspects, using a structure that portrays the reasons and consequences of migration. The model has been customised to Senegal, being an appropriate representative of the theoretical interesting universe of cases. The comparison of the model generated scenarios - in which the intensity of emigration, the loss and gain of education, the remittances or the level of dependence changes - facilitates the analysis. The present study produces two important results. The first outcome is the development of an integrative framework representing migration and development in an endogenous way and incorporating several aspects of different theories. This model can be used as a starting point for further discussions and improvements and it is a fairly relevant and useful result against the background that migration is not integrated into most of the development planning tools despite its significant impact. The second outcome is the gained insights concerning the feedback relations between migration and development and the impact of changes in migration on development. To give two examples: It could be found that migration impacts development positively, indicated by HDI, but that the dominant behaviour of migration and development is a counteracting behaviour. That means that an increase in emigration leads to an improvement in development, while this in turn causes a decline in emigration, counterbalancing the initial increase. Another insight concerns the discovery that migration causes a decline in education in the short term, but leads to an increase in the long term, after approximately 25 years - a typical worse-before-better behaviour. From these and further observations, important policy implications can be derived for the sending and receiving countries. Hence, by overcoming the unidirectional perspective, this study contributes to an improved understanding of the highly complex relationship between migration and development and their feedback relations.}, language = {en} } @misc{ZuehlkeMeilingRoderetal.2021, author = {Z{\"u}hlke, Martin and Meiling, Till Thomas and Roder, Phillip and Riebe, Daniel and Beitz, Toralf and Bald, Ilko and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Janßen, Traute and Erhard, Marcel and Repp, Alexander}, title = {Photodynamic Inactivation of E. coli Bacteria via Carbon Nanodots}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, publisher = {Universit{\"a}t Potsdam}, address = {Potsdam}, issn = {1866-8372}, doi = {10.25932/publishup-53842}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538425}, pages = {23742 -- 23749}, year = {2021}, abstract = {The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines.}, language = {en} } @phdthesis{Zoeller2005, author = {Z{\"o}ller, Gert}, title = {Critical states of seismicity : modeling and data analysis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-7427}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {The occurrence of earthquakes is characterized by a high degree of spatiotemporal complexity. Although numerous patterns, e.g. fore- and aftershock sequences, are well-known, the underlying mechanisms are not observable and thus not understood. Because the recurrence times of large earthquakes are usually decades or centuries, the number of such events in corresponding data sets is too small to draw conclusions with reasonable statistical significance. Therefore, the present study combines both, numerical modeling and analysis of real data in order to unveil the relationships between physical mechanisms and observational quantities. The key hypothesis is the validity of the so-called "critical point concept" for earthquakes, which assumes large earthquakes to occur as phase transitions in a spatially extended many-particle system, similar to percolation models. New concepts are developed to detect critical states in simulated and in natural data sets. The results indicate that important features of seismicity like the frequency-size distribution and the temporal clustering of earthquakes depend on frictional and structural fault parameters. In particular, the degree of quenched spatial disorder (the "roughness") of a fault zone determines whether large earthquakes occur quasiperiodically or more clustered. This illustrates the power of numerical models in order to identify regions in parameter space, which are relevant for natural seismicity. The critical point concept is verified for both, synthetic and natural seismicity, in terms of a critical state which precedes a large earthquake: a gradual roughening of the (unobservable) stress field leads to a scale-free (observable) frequency-size distribution. Furthermore, the growth of the spatial correlation length and the acceleration of the seismic energy release prior to large events is found. The predictive power of these precursors is, however, limited. Instead of forecasting time, location, and magnitude of individual events, a contribution to a broad multiparameter approach is encouraging.}, subject = {Seismizit{\"a}t}, language = {en} } @phdthesis{Zoeller1999, author = {Z{\"o}ller, Gert}, title = {Analyse raumzeitlicher Muster in Erdbebendaten}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0000122}, school = {Universit{\"a}t Potsdam}, year = {1999}, abstract = {Die vorliegende Arbeit besch{\"a}ftigt sich mit der Charakterisierung von Seismizit{\"a}t anhand von Erdbebenkatalogen. Es werden neue Verfahren der Datenanalyse entwickelt, die Aufschluss dar{\"u}ber geben sollen, ob der seismischen Dynamik ein stochastischer oder ein deterministischer Prozess zugrunde liegt und was daraus f{\"u}r die Vorhersagbarkeit starker Erdbeben folgt. Es wird gezeigt, dass seismisch aktive Regionen h{\"a}ufig durch nichtlinearen Determinismus gekennzeichent sind. Dies schließt zumindest die M{\"o}glichkeit einer Kurzzeitvorhersage ein. Das Auftreten seismischer Ruhe wird h{\"a}ufig als Vorl{\"a}uferphaenomen f{\"u}r starke Erdbeben gedeutet. Es wird eine neue Methode pr{\"a}sentiert, die eine systematische raumzeitliche Kartierung seismischer Ruhephasen erm{\"o}glicht. Die statistische Signifikanz wird mit Hilfe des Konzeptes der Ersatzdaten bestimmt. Als Resultat erh{\"a}lt man deutliche Korrelationen zwischen seismischen Ruheperioden und starken Erdbeben. Gleichwohl ist die Signifikanz daf{\"u}r nicht hoch genug, um eine Vorhersage im Sinne einer Aussage {\"u}ber den Ort, die Zeit und die St{\"a}rke eines zu erwartenden Hauptbebens zu erm{\"o}glichen.}, language = {en} } @misc{ZorHeiskanenCavigliaetal.2014, author = {Z{\´o}r, K. and Heiskanen, A. and Caviglia, Claudia and Vergani, M. and Landini, E. and Shah, F. and Carminati, Marco and Mart{\´i}nez-Serrano, A. and Ramos Moreno, T. and Kokaia, M. and Benayahu, Dafna and Keresztes, Zs. and Papkovsky, D. and Wollenberger, Ursula and Svendsen, W. E. and Dimaki, M. and Ferrari, G. and Raiteri, R. and Sampietro, M. and Dufva, M. and Emn{\´e}us, J.}, title = {A compact multifunctional microfluidic platform for exploring cellular dynamics in real-time using electrochemical detection}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-99492}, pages = {11}, year = {2014}, abstract = {Downscaling of microfluidic cell culture and detection devices for electrochemical monitoring has mostly focused on miniaturization of the microfluidic chips which are often designed for specific applications and therefore lack functional flexibility. We present a compact microfluidic cell culture and electrochemical analysis platform with in-built fluid handling and detection, enabling complete cell based assays comprising on-line electrode cleaning, sterilization, surface functionalization, cell seeding, cultivation and electrochemical real-time monitoring of cellular dynamics. To demonstrate the versatility and multifunctionality of the platform, we explored amperometric monitoring of intracellular redox activity in yeast (Saccharomyces cerevisiae) and detection of exocytotically released dopamine from rat pheochromocytoma cells (PC12). Electrochemical impedance spectroscopy was used in both applications for monitoring cell sedimentation and adhesion as well as proliferation in the case of PC12 cells. The influence of flow rate on the signal amplitude in the detection of redox metabolism as well as the effect of mechanical stimulation on dopamine release were demonstrated using the programmable fluid handling capability. The here presented platform is aimed at applications utilizing cell based assays, ranging from e.g. monitoring of drug effects in pharmacological studies, characterization of neural stem cell differentiation, and screening of genetically modified microorganisms to environmental monitoring.}, language = {en} } @misc{ZwiebackKokeljGuentheretal.2018, author = {Zwieback, Simon and Kokelj, Steven V. and G{\"u}nther, Frank and Boike, Julia and Grosse, Guido and Hajnsek, Irena}, title = {Sub-seasonal thaw slump mass wasting is not consistently energy limited at the landscape scale}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {926}, issn = {1866-8372}, doi = {10.25932/publishup-44568}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-445688}, pages = {549 -- 564}, year = {2018}, abstract = {Predicting future thaw slump activity requires a sound understanding of the atmospheric drivers and geomorphic controls on mass wasting across a range of timescales. On sub-seasonal timescales, sparse measurements indicate that mass wasting at active slumps is often limited by the energy available for melting ground ice, but other factors such as rainfall or the formation of an insulating veneer may also be relevant. To study the sub-seasonal drivers, we derive topographic changes from single-pass radar interferometric data acquired by the TanDEM-X satellites. The estimated elevation changes at 12m resolution complement the commonly observed planimetric retreat rates by providing information on volume losses. Their high vertical precision (around 30 cm), frequent observations (11 days) and large coverage (5000 km(2)) allow us to track mass wasting as drivers such as the available energy change during the summer of 2015 in two study regions. We find that thaw slumps in the Tuktoyaktuk coastlands, Canada, are not energy limited in June, as they undergo limited mass wasting (height loss of around 0 cm day 1) despite the ample available energy, suggesting the widespread presence of early season insulating snow or debris veneer. Later in summer, height losses generally increase (around 3 cm day 1), but they do so in distinct ways. For many slumps, mass wasting tracks the available energy, a temporal pattern that is also observed at coastal yedoma cliffs on the Bykovsky Peninsula, Russia. However, the other two common temporal trajectories are asynchronous with the available energy, as they track strong precipitation events or show a sudden speed-up in late August respectively. The observed temporal patterns are poorly related to slump characteristics like the headwall height. The contrasting temporal behaviour of nearby thaw slumps highlights the importance of complex local and temporally varying controls on mass wasting.}, language = {en} } @misc{ZwickelKahlRychliketal.2018, author = {Zwickel, Theresa and Kahl, Sandra M. and Rychlik, Michael and M{\"u}ller, Marina E. H.}, title = {Chemotaxonomy of mycotoxigenic small-spored Alternaria fungi}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {696}, issn = {1866-8372}, doi = {10.25932/publishup-42662}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426623}, pages = {20}, year = {2018}, abstract = {Necrotrophic as well as saprophytic small-spored Altemaria (A.) species are annually responsible for major losses of agricultural products, such as cereal crops, associated with the contamination of food and feedstuff with potential health-endangering Altemaria toxins. Knowledge of the metabolic capabilities of different species-groups to form mycotoxins is of importance for a reliable risk assessment. 93 Altemaria strains belonging to the four species groups Alternaria tenuissima, A. arborescens, A. altemata, and A. infectoria were isolated from winter wheat kernels harvested from fields in Germany and Russia and incubated under equal conditions. Chemical analysis by means of an HPLC-MS/MS multi-Alternaria-toxin-method showed that 95\% of all strains were able to form at least one of the targeted 17 non-host specific Altemaria toxins. Simultaneous production of up to 15 (modified) Altemaria toxins by members of the A. tenuissima, A. arborescens, A. altemata species-groups and up to seven toxins by A. infectoria strains was demonstrated. Overall tenuazonic acid was the most extensively formed mycotoxin followed by alternariol and alternariol mono methylether, whereas altertoxin I was the most frequently detected toxin. Sulfoconjugated modifications of alternariol, alternariol mono methylether, altenuisol and altenuene were frequently determined. Unknown perylene quinone derivatives were additionally detected. Strains of the species-group A. infectoria could be segregated from strains of the other three species-groups due to significantly lower toxin levels and the specific production of infectopyrone. Apart from infectopyrone, alterperylenol was also frequently produced by 95\% of the A. infectoria strains. Neither by the concentration nor by the composition of the targeted Altemaria toxins a differentiation between the species-groups A. altemata, A. tenuissima and A. arborescens was possible.}, language = {en} } @misc{ZwickelKahlKlaffkeetal.2017, author = {Zwickel, Theresa and Kahl, Sandra M. and Klaffke, Horst and Rychlik, Michael and M{\"u}ller, Marina E. H.}, title = {Spotlight on the underdogs}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-400438}, pages = {17}, year = {2017}, abstract = {Alternaria (A.) is a genus of widespread fungi capable of producing numerous, possibly health-endangering Alternaria toxins (ATs), which are usually not the focus of attention. The formation of ATs depends on the species and complex interactions of various environmental factors and is not fully understood. In this study the influence of temperature (7 °C, 25 °C), substrate (rice, wheat kernels) and incubation time (4, 7, and 14 days) on the production of thirteen ATs and three sulfoconjugated ATs by three different Alternaria isolates from the species groups A. tenuissima and A. infectoria was determined. High-performance liquid chromatography coupled with tandem mass spectrometry was used for quantification. Under nearly all conditions, tenuazonic acid was the most extensively produced toxin. At 25 °C and with increasing incubation time all toxins were formed in high amounts by the two A. tenuissima strains on both substrates with comparable mycotoxin profiles. However, for some of the toxins, stagnation or a decrease in production was observed from day 7 to 14. As opposed to the A. tenuissima strains, the A. infectoria strain only produced low amounts of ATs, but high concentrations of stemphyltoxin III. The results provide an essential insight into the quantitative in vitro AT formation under different environmental conditions, potentially transferable to different field and storage conditions}, language = {en} } @misc{ZwaagHorstBlaženovićetal.2020, author = {Zwaag, Jelle and Horst, Rob ter and Blaženović, Ivana and St{\"o}ßel, Daniel and Ratter, Jacqueline and Worseck, Josephine M. and Schauer, Nicolas and Stienstra, Rinke and Netea, Mihai G. and Jahn, Dieter and Pickkers, Peter and Kox, Matthijs}, title = {Involvement of lactate and pyruvate in the anti-inflammatory effects exerted by voluntary activation of the sympathetic nervous system}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {4}, issn = {1866-8372}, doi = {10.25932/publishup-51778}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-517784}, pages = {20}, year = {2020}, abstract = {We recently demonstrated that the sympathetic nervous system can be voluntarily activated following a training program consisting of cold exposure, breathing exercises, and meditation. This resulted in profound attenuation of the systemic inflammatory response elicited by lipopolysaccharide (LPS) administration. Herein, we assessed whether this training program affects the plasma metabolome and if these changes are linked to the immunomodulatory effects observed. A total of 224 metabolites were identified in plasma obtained from 24 healthy male volunteers at six timepoints, of which 98 were significantly altered following LPS administration. Effects of the training program were most prominent shortly after initiation of the acquired breathing exercises but prior to LPS administration, and point towards increased activation of the Cori cycle. Elevated concentrations of lactate and pyruvate in trained individuals correlated with enhanced levels of anti-inflammatory interleukin (IL)-10. In vitro validation experiments revealed that co-incubation with lactate and pyruvate enhances IL-10 production and attenuates the release of pro-inflammatory IL-1 beta and IL-6 by LPS-stimulated leukocytes. Our results demonstrate that practicing the breathing exercises acquired during the training program results in increased activity of the Cori cycle. Furthermore, this work uncovers an important role of lactate and pyruvate in the anti-inflammatory phenotype observed in trained subjects.}, language = {en} } @misc{ZurnicHuetterRzehaetal.2016, author = {Zurnic, Irena and H{\"u}tter, Sylvia and Rzeha, Ute and Stanke, Nicole and Reh, Juliane and M{\"u}llers, Erik and Hamann, Martin V. and Kern, Tobias and Gerresheim, Gesche K. and Lindel, Fabian and Serrao, Erik and Lesbats, Paul and Engelman, Alan N. and Cherepanov, Peter and Lindemann, Dirk}, title = {Interactions of prototype foamy virus capsids with host cell polo-like kinases are important for efficient viral DNA integration}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {580}, issn = {1866-8372}, doi = {10.25932/publishup-41131}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411317}, pages = {36}, year = {2016}, abstract = {Unlike for other retroviruses, only a few host cell factors that aid the replication of foamy viruses (FVs) via interaction with viral structural components are known. Using a yeast-two-hybrid (Y2H) screen with prototype FV (PFV) Gag protein as bait we identified human polo-like kinase 2 (hPLK2), a member of cell cycle regulatory kinases, as a new interactor of PFV capsids. Further Y2H studies confirmed interaction of PFV Gag with several PLKs of both human and rat origin. A consensus Ser-Thr/Ser-Pro (S-T/S-P) motif in Gag, which is conserved among primate FVs and phosphorylated in PFV virions, was essential for recognition by PLKs. In the case of rat PLK2, functional kinase and polo-box domains were required for interaction with PFV Gag. Fluorescently-tagged PFV Gag, through its chromatin tethering function, selectively relocalized ectopically expressed eGFP-tagged PLK proteins to mitotic chromosomes in a Gag STP motif-dependent manner, confirming a specific and dominant nature of the Gag-PLK interaction in mammalian cells. The functional relevance of the Gag-PLK interaction was examined in the context of replication-competent FVs and single-round PFV vectors. Although STP motif mutated viruses displayed wild type (wt) particle release, RNA packaging and intra-particle reverse transcription, their replication capacity was decreased 3-fold in single-cycle infections, and up to 20-fold in spreading infections over an extended time period. Strikingly similar defects were observed when cells infected with single-round wt Gag PFV vectors were treated with a pan PLK inhibitor. Analysis of entry kinetics of the mutant viruses indicated a post-fusion defect resulting in delayed and reduced integration, which was accompanied with an enhanced preference to integrate into heterochromatin. We conclude that interaction between PFV Gag and cellular PLK proteins is important for early replication steps of PFV within host cells.}, language = {en} } @misc{ZurellKoenigMalchowetal.2021, author = {Zurell, Damaris and K{\"o}nig, Christian and Malchow, Anne-Kathleen and Kapitza, Simon and Bocedi, Greta and Travis, Justin M. J. and Fandos, Guillermo}, title = {Spatially explicit models for decision-making in animal conservation and restoration}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, volume = {2022}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, edition = {4}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1866-8372}, doi = {10.25932/publishup-54991}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-549915}, pages = {1 -- 16}, year = {2021}, abstract = {Models are useful tools for understanding and predicting ecological patterns and processes. Under ongoing climate and biodiversity change, they can greatly facilitate decision-making in conservation and restoration and help designing adequate management strategies for an uncertain future. Here, we review the use of spatially explicit models for decision support and to identify key gaps in current modelling in conservation and restoration. Of 650 reviewed publications, 217 publications had a clear management application and were included in our quantitative analyses. Overall, modelling studies were biased towards static models (79\%), towards the species and population level (80\%) and towards conservation (rather than restoration) applications (71\%). Correlative niche models were the most widely used model type. Dynamic models as well as the gene-to-individual level and the community-to-ecosystem level were underrepresented, and explicit cost optimisation approaches were only used in 10\% of the studies. We present a new model typology for selecting models for animal conservation and restoration, characterising model types according to organisational levels, biological processes of interest and desired management applications. This typology will help to more closely link models to management goals. Additionally, future efforts need to overcome important challenges related to data integration, model integration and decision-making. We conclude with five key recommendations, suggesting that wider usage of spatially explicit models for decision support can be achieved by 1) developing a toolbox with multiple, easier-to-use methods, 2) improving calibration and validation of dynamic modelling approaches and 3) developing best-practise guidelines for applying these models. Further, more robust decision-making can be achieved by 4) combining multiple modelling approaches to assess uncertainty, and 5) placing models at the core of adaptive management. These efforts must be accompanied by long-term funding for modelling and monitoring, and improved communication between research and practise to ensure optimal conservation and restoration outcomes.}, language = {en} } @phdthesis{Zurell2011, author = {Zurell, Damaris}, title = {Integrating dynamic and statistical modelling approaches in order to improve predictions for scenarios of environmental change}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-56845}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Species respond to environmental change by dynamically adjusting their geographical ranges. Robust predictions of these changes are prerequisites to inform dynamic and sustainable conservation strategies. Correlative species distribution models (SDMs) relate species' occurrence records to prevailing environmental factors to describe the environmental niche. They have been widely applied in global change context as they have comparably low data requirements and allow for rapid assessments of potential future species' distributions. However, due to their static nature, transient responses to environmental change are essentially ignored in SDMs. Furthermore, neither dispersal nor demographic processes and biotic interactions are explicitly incorporated. Therefore, it has often been suggested to link statistical and mechanistic modelling approaches in order to make more realistic predictions of species' distributions for scenarios of environmental change. In this thesis, I present two different ways of such linkage. (i) Mechanistic modelling can act as virtual playground for testing statistical models and allows extensive exploration of specific questions. I promote this 'virtual ecologist' approach as a powerful evaluation framework for testing sampling protocols, analyses and modelling tools. Also, I employ such an approach to systematically assess the effects of transient dynamics and ecological properties and processes on the prediction accuracy of SDMs for climate change projections. That way, relevant mechanisms are identified that shape the species' response to altered environmental conditions and which should hence be considered when trying to project species' distribution through time. (ii) I supplement SDM projections of potential future habitat for black grouse in Switzerland with an individual-based population model. By explicitly considering complex interactions between habitat availability and demographic processes, this allows for a more direct assessment of expected population response to environmental change and associated extinction risks. However, predictions were highly variable across simulations emphasising the need for principal evaluation tools like sensitivity analysis to assess uncertainty and robustness in dynamic range predictions. Furthermore, I identify data coverage of the environmental niche as a likely cause for contrasted range predictions between SDM algorithms. SDMs may fail to make reliable predictions for truncated and edge niches, meaning that portions of the niche are not represented in the data or niche edges coincide with data limits. Overall, my thesis contributes to an improved understanding of uncertainty factors in predictions of range dynamics and presents ways how to deal with these. Finally I provide preliminary guidelines for predictive modelling of dynamic species' response to environmental change, identify key challenges for future research and discuss emerging developments.}, language = {en} } @phdthesis{Zuo2017, author = {Zuo, Zhe}, title = {From unstructured to structured: Context-based named entity mining from text}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412576}, school = {Universit{\"a}t Potsdam}, pages = {vii, 112}, year = {2017}, abstract = {With recent advances in the area of information extraction, automatically extracting structured information from a vast amount of unstructured textual data becomes an important task, which is infeasible for humans to capture all information manually. Named entities (e.g., persons, organizations, and locations), which are crucial components in texts, are usually the subjects of structured information from textual documents. Therefore, the task of named entity mining receives much attention. It consists of three major subtasks, which are named entity recognition, named entity linking, and relation extraction. These three tasks build up an entire pipeline of a named entity mining system, where each of them has its challenges and can be employed for further applications. As a fundamental task in the natural language processing domain, studies on named entity recognition have a long history, and many existing approaches produce reliable results. The task is aiming to extract mentions of named entities in text and identify their types. Named entity linking recently received much attention with the development of knowledge bases that contain rich information about entities. The goal is to disambiguate mentions of named entities and to link them to the corresponding entries in a knowledge base. Relation extraction, as the final step of named entity mining, is a highly challenging task, which is to extract semantic relations between named entities, e.g., the ownership relation between two companies. In this thesis, we review the state-of-the-art of named entity mining domain in detail, including valuable features, techniques, evaluation methodologies, and so on. Furthermore, we present two of our approaches that focus on the named entity linking and relation extraction tasks separately. To solve the named entity linking task, we propose the entity linking technique, BEL, which operates on a textual range of relevant terms and aggregates decisions from an ensemble of simple classifiers. Each of the classifiers operates on a randomly sampled subset of the above range. In extensive experiments on hand-labeled and benchmark datasets, our approach outperformed state-of-the-art entity linking techniques, both in terms of quality and efficiency. For the task of relation extraction, we focus on extracting a specific group of difficult relation types, business relations between companies. These relations can be used to gain valuable insight into the interactions between companies and perform complex analytics, such as predicting risk or valuating companies. Our semi-supervised strategy can extract business relations between companies based on only a few user-provided seed company pairs. By doing so, we also provide a solution for the problem of determining the direction of asymmetric relations, such as the ownership_of relation. We improve the reliability of the extraction process by using a holistic pattern identification method, which classifies the generated extraction patterns. Our experiments show that we can accurately and reliably extract new entity pairs occurring in the target relation by using as few as five labeled seed pairs.}, language = {en} } @misc{ZulawskiSchulzeBraginetsetal.2014, author = {Zulawski, Monika and Schulze, Gunnar and Braginets, Rostyslav and Hartmann, Stefanie and Schulze, Waltraud X}, title = {The Arabidopsis Kinome}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {861}, issn = {1866-8372}, doi = {10.25932/publishup-43290}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-432907}, pages = {17}, year = {2014}, abstract = {Background Protein kinases constitute a particularly large protein family in Arabidopsis with important functions in cellular signal transduction networks. At the same time Arabidopsis is a model plant with high frequencies of gene duplications. Here, we have conducted a systematic analysis of the Arabidopsis kinase complement, the kinome, with particular focus on gene duplication events. We matched Arabidopsis proteins to a Hidden-Markov Model of eukaryotic kinases and computed a phylogeny of 942 Arabidopsis protein kinase domains and mapped their origin by gene duplication. Results The phylogeny showed two major clades of receptor kinases and soluble kinases, each of which was divided into functional subclades. Based on this phylogeny, association of yet uncharacterized kinases to families was possible which extended functional annotation of unknowns. Classification of gene duplications within these protein kinases revealed that representatives of cytosolic subfamilies showed a tendency to maintain segmentally duplicated genes, while some subfamilies of the receptor kinases were enriched for tandem duplicates. Although functional diversification is observed throughout most subfamilies, some instances of functional conservation among genes transposed from the same ancestor were observed. In general, a significant enrichment of essential genes was found among genes encoding for protein kinases. Conclusions The inferred phylogeny allowed classification and annotation of yet uncharacterized kinases. The prediction and analysis of syntenic blocks and duplication events within gene families of interest can be used to link functional biology to insights from an evolutionary viewpoint. The approach undertaken here can be applied to any gene family in any organism with an annotated genome.}, language = {en} } @phdthesis{Zuhr2023, author = {Zuhr, Alexandra}, title = {Proxy signal formation in palaeoclimate archives}, doi = {10.25932/publishup-58286}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-582864}, school = {Universit{\"a}t Potsdam}, pages = {xx, 167}, year = {2023}, abstract = {Throughout the last ~3 million years, the Earth's climate system was characterised by cycles of glacial and interglacial periods. The current warm period, the Holocene, is comparably stable and stands out from this long-term cyclicality. However, since the industrial revolution, the climate has been increasingly affected by a human-induced increase in greenhouse gas concentrations. While instrumental observations are used to describe changes over the past ~200 years, indirect observations via proxy data are the main source of information beyond this instrumental era. These data are indicators of past climatic conditions, stored in palaeoclimate archives around the Earth. The proxy signal is affected by processes independent of the prevailing climatic conditions. In particular, for sedimentary archives such as marine sediments and polar ice sheets, material may be redistributed during or after the initial deposition and subsequent formation of the archive. This leads to noise in the records challenging reliable reconstructions on local or short time scales. This dissertation characterises the initial deposition of the climatic signal and quantifies the resulting archive-internal heterogeneity and its influence on the observed proxy signal to improve the representativity and interpretation of climate reconstructions from marine sediments and ice cores. To this end, the horizontal and vertical variation in radiocarbon content of a box-core from the South China Sea is investigated. The three-dimensional resolution is used to quantify the true uncertainty in radiocarbon age estimates from planktonic foraminifera with an extensive sampling scheme, including different sample volumes and replicated measurements of batches of small and large numbers of specimen. An assessment on the variability stemming from sediment mixing by benthic organisms reveals strong internal heterogeneity. Hence, sediment mixing leads to substantial time uncertainty of proxy-based reconstructions with error terms two to five times larger than previously assumed. A second three-dimensional analysis of the upper snowpack provides insights into the heterogeneous signal deposition and imprint in snow and firn. A new study design which combines a structure-from-motion photogrammetry approach with two-dimensional isotopic data is performed at a study site in the accumulation zone of the Greenland Ice Sheet. The photogrammetry method reveals an intermittent character of snowfall, a layer-wise snow deposition with substantial contributions by wind-driven erosion and redistribution to the final spatially variable accumulation and illustrated the evolution of stratigraphic noise at the surface. The isotopic data show the preservation of stratigraphic noise within the upper firn column, leading to a spatially variable climate signal imprint and heterogeneous layer thicknesses. Additional post-depositional modifications due to snow-air exchange are also investigated, but without a conclusive quantification of the contribution to the final isotopic signature. Finally, this characterisation and quantification of the complex signal formation in marine sediments and polar ice contributes to a better understanding of the signal content in proxy data which is needed to assess the natural climate variability during the Holocene.}, language = {en} } @misc{ZouitaZouhalFerchichietal.2020, author = {Zouita, Sghaier and Zouhal, Hassane and Ferchichi, Habiba and Paillard, Thierry and Dziri, Catherine and Hackney, Anthony C. and Laher, Ismail and Granacher, Urs and Ben Moussa Zouita, Amira}, title = {Effects of Combined Balance and Strength Training on Measures of Balance and Muscle Strength in Older Women With a History of Falls}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {699}, issn = {1866-8364}, doi = {10.25932/publishup-49093}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-490932}, pages = {15}, year = {2020}, abstract = {Objective: We investigated the effects of combined balance and strength training on measures of balance and muscle strength in older women with a history of falls. Methods: Twenty-seven older women aged 70.4 ± 4.1 years (age range: 65 to 75 years) were randomly allocated to either an intervention (IG, n = 12) or an active control (CG, n = 15) group. The IG completed 8 weeks combined balance and strength training program with three sessions per week including visual biofeedback using force plates. The CG received physical therapy and gait training at a rehabilitation center. Training volumes were similar between the groups. Pre and post training, tests were applied for the assessment of muscle strength (weight-bearing squat [WBS] by measuring the percentage of body mass borne by each leg at different knee flexions [0°, 30°, 60°, and 90°], sit-to-stand test [STS]), and balance. Balance tests used the modified clinical test of sensory interaction (mCTSIB) with eyes closed (EC) and opened (EO), on stable (firm) and unstable (foam) surfaces as well as spatial parameters of gait such as step width and length (cm) and walking speed (cm/s). Results: Significant group × time interactions were found for different degrees of knee flexion during WBS (0.0001 < p < 0.013, 0.441 < d < 0.762). Post hoc tests revealed significant pre-to-post improvements for both legs and for all degrees of flexion (0.0001 < p < 0.002, 0.697 < d < 1.875) for IG compared to CG. Significant group × time interactions were found for firm EO, foam EO, firm EC, and foam EC (0.006 < p < 0.029; 0.302 < d < 0.518). Post hoc tests showed significant pre-to-post improvements for both legs and for all degrees of oscillations (0.0001 < p < 0.004, 0.753 < d < 2.097) for IG compared to CG. This study indicates that combined balance and strength training improved percentage distribution of body weight between legs at different conditions of knee flexion (0°, 30°, 60°, and 90°) and also decreased the sway oscillation on a firm surface with eyes closed, and on foam surface (with eyes opened or closed) in the IG. Conclusion: The higher positive effects of training seen in standing balance tests, compared with dynamic tests, suggests that balance training exercises including lateral, forward, and backward exercises improved static balance to a greater extent in older women.}, language = {en} } @misc{ZouhalAbderrahmanDupontetal.2019, author = {Zouhal, Hassane and Abderrahman, Abderraouf Ben and Dupont, Gregory and Truptin, Pablo and Le Bris, R{\´e}gis and Le Postec, Erwan and Sghaeir, Zouita and Brughelli, Matt and Granacher, Urs and Bideau, Benoit}, title = {Effects of Neuromuscular Training on Agility Performance in Elite Soccer Players}, series = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, number = {575}, issn = {1866-8364}, doi = {10.25932/publishup-43735}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-437358}, pages = {9}, year = {2019}, abstract = {Background: Agility in general and change-of-direction speed (CoD) in particular represent important performance determinants in elite soccer. Objectives: The objectives of this study were to determine the effects of a 6-week neuromuscular training program on agility performance, and to determine differences in movement times between the slower and faster turning directions in elite soccer players. Materials and Methods: Twenty male elite soccer players from the Stade Rennais Football Club (Ligue 1, France) participated in this study. The players were randomly assigned to a neuromuscular training group (NTG, n = 10) or an active control (CG, n = 10) according to their playing position. NTG participated in a 6-week, twice per week neuromuscular training program that included CoD, plyometric and dynamic stability exercises. Neuromuscular training replaced the regular warm-up program. Each training session lasted 30 min. CG continued their regular training program. Training volume was similar between groups. Before and after the intervention, the two groups performed a reactive agility test that included 180° left and right body rotations followed by a 5-m linear sprint. The weak side was defined as the left/right turning direction that produced slower overall movement times (MT). Reaction time (RT) was assessed and defined as the time from the first appearance of a visual stimulus until the athlete's first movement. MT corresponded to the time from the first movement until the athlete reached the arrival gate (5 m distance). Results: No significant between-group baseline differences were observed for RT or MT. Significant group x time interactions were found for MT (p = 0.012, effect size = 0.332, small) for the slower and faster directions (p = 0.011, effect size = 0.627, moderate). Significant pre-to post improvements in MT were observed for NTG but not CG (p = 0.011, effect size = 0.877, moderate). For NTG, post hoc analyses revealed significant MT improvements for the slower (p = 0.012, effect size = 0.897, moderate) and faster directions (p = 0.017, effect size = 0.968, moderate). Conclusion: Our results illustrate that 6 weeks of neuromuscular training with two sessions per week included in the warm-up program, significantly enhanced agility performance in elite soccer players. Moreover, improvements were found on both sides during body rotations. Thus, practitioners are advised to focus their training programs on both turning directions.}, language = {en} } @phdthesis{Zou2007, author = {Zou, Yong}, title = {Exploring recurrences in quasiperiodic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16497}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {In this work, some new results to exploit the recurrence properties of quasiperiodic dynamical systems are presented by means of a two dimensional visualization technique, Recurrence Plots(RPs). Quasiperiodicity is the simplest form of dynamics exhibiting nontrivial recurrences, which are common in many nonlinear systems. The concept of recurrence was introduced to study the restricted three body problem and it is very useful for the characterization of nonlinear systems. I have analyzed in detail the recurrence patterns of systems with quasiperiodic dynamics both analytically and numerically. Based on a theoretical analysis, I have proposed a new procedure to distinguish quasiperiodic dynamics from chaos. This algorithm is particular useful in the analysis of short time series. Furthermore, this approach demonstrates to be efficient in recognizing regular and chaotic trajectories of dynamical systems with mixed phase space. Regarding the application to real situations, I have shown the capability and validity of this method by analyzing time series from fluid experiments.}, language = {en} } @phdthesis{Zorn2020, author = {Zorn, Edgar Ulrich}, title = {Monitoring lava dome growth and deformation with photogrammetric methods and modelling}, doi = {10.25932/publishup-48360}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-483600}, school = {Universit{\"a}t Potsdam}, pages = {IX, 167}, year = {2020}, abstract = {Lava domes are severely hazardous, mound-shaped extrusions of highly viscous lava and commonly erupt at many active stratovolcanoes around the world. Due to gradual growth and flank oversteepening, such lava domes regularly experience partial or full collapses, resulting in destructive and far-reaching pyroclastic density currents. They are also associated with cyclic explosive activity as the complex interplay of cooling, degassing, and solidification of dome lavas regularly causes gas pressurizations on the dome or the underlying volcano conduit. Lava dome extrusions can last from days to decades, further highlighting the need for accurate and reliable monitoring data. This thesis aims to improve our understanding of lava dome processes and to contribute to the monitoring and prediction of hazards posed by these domes. The recent rise and sophistication of photogrammetric techniques allows for the extraction of observational data in unprecedented detail and creates ideal tools for accomplishing this purpose. Here, I study natural lava dome extrusions as well as laboratory-based analogue models of lava dome extrusions and employ photogrammetric monitoring by Structure-from-Motion (SfM) and Particle-Image-Velocimetry (PIV) techniques. I primarily use aerial photography data obtained by helicopter, airplanes, Unoccupied Aircraft Systems (UAS) or ground-based timelapse cameras. Firstly, by combining a long time-series of overflight data at Volc{\´a}n de Colima, M{\´e}xico, with seismic and satellite radar data, I construct a detailed timeline of lava dome and crater evolution. Using numerical model, the impact of the extrusion on dome morphology and loading stress is further evaluated and an impact on the growth direction is identified, bearing important implications for the location of collapse hazards. Secondly, sequential overflight surveys at the Santiaguito lava dome, Guatemala, reveal surface motion data in high detail. I quantify the growth of the lava dome and the movement of a lava flow, showing complex motions that occur on different timescales and I provide insight into rock properties relevant for hazard assessment inferred purely by photogrammetric processing of remote sensing data. Lastly, I recreate artificial lava dome and spine growth using analogue modelling under controlled conditions, providing new insights into lava extrusion processes and structures as well as the conditions in which they form. These findings demonstrate the capabilities of photogrammetric data analyses to successfully monitor lava dome growth and evolution while highlighting the advantages of complementary modelling methods to explain the observed phenomena. The results presented herein further bear important new insights and implications for the hazards posed by lava domes.}, language = {en} } @phdthesis{Zona2024, author = {Zona, Carlotta Isabella}, title = {Visuo-linguistic integration for thematic-role assignment across speakers}, doi = {10.25932/publishup-63185}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-631857}, school = {Universit{\"a}t Potsdam}, pages = {147}, year = {2024}, abstract = {This dissertation examines the integration of incongruent visual-scene and morphological-case information ("cues") in building thematic-role representations of spoken relative clauses in German. Addressing the mutual influence of visual and linguistic processing, the Coordinated Interplay Account (CIA) describes a mechanism in two steps supporting visuo-linguistic integration (Knoeferle \& Crocker, 2006, Cog Sci). However, the outcomes and dynamics of integrating incongruent thematic-role representations from distinct sources have been investigated scarcely. Further, there is evidence that both second-language (L2) and older speakers may rely on non-syntactic cues relatively more than first-language (L1)/young speakers. Yet, the role of visual information for thematic-role comprehension has not been measured in L2 speakers, and only limitedly across the adult lifespan. Thematically unambiguous canonically ordered (subject-extracted) and noncanonically ordered (object-extracted) spoken relative clauses in German (see 1a-b) were presented in isolation and alongside visual scenes conveying either the same (congruent) or the opposite (incongruent) thematic relations as the sentence did. 1 a Das ist der Koch, der die Braut verfolgt. This is the.NOM cook who.NOM the.ACC bride follows This is the cook who is following the bride. b Das ist der Koch, den die Braut verfolgt. This is the.NOM cook whom.ACC the.NOM bride follows This is the cook whom the bride is following. The relative contribution of each cue to thematic-role representations was assessed with agent identification. Accuracy and latency data were collected post-sentence from a sample of L1 and L2 speakers (Zona \& Felser, 2023), and from a sample of L1 speakers from across the adult lifespan (Zona \& Reifegerste, under review). In addition, the moment-by-moment dynamics of thematic-role assignment were investigated with mouse tracking in a young L1 sample (Zona, under review). The following questions were addressed: (1) How do visual scenes influence thematic-role representations of canonical and noncanonical sentences? (2) How does reliance on visual-scene, case, and word-order cues vary in L1 and L2 speakers? (3) How does reliance on visual-scene, case, and word-order cues change across the lifespan? The results showed reliable effects of incongruence of visually and linguistically conveyed thematic relations on thematic-role representations. Incongruent (vs. congruent) scenes yielded slower and less accurate responses to agent-identification probes presented post-sentence. The recently inspected agent was considered as the most likely agent ~300ms after trial onset, and the convergence of visual scenes and word order enabled comprehenders to assign thematic roles predictively. L2 (vs. L1) participants relied more on word order overall. In response to noncanonical clauses presented with incongruent visual scenes, sensitivity to case predicted the size of incongruence effects better than L1-L2 grouping. These results suggest that the individual's ability to exploit specific cues might predict their weighting. Sensitivity to case was stable throughout the lifespan, while visual effects increased with increasing age and were modulated by individual interference-inhibition levels. Thus, age-related changes in comprehension may stem from stronger reliance on visually (vs. linguistically) conveyed meaning. These patterns represent evidence for a recent-role preference - i.e., a tendency to re-assign visually conveyed thematic roles to the same referents in temporally coordinated utterances. The findings (i) extend the generalizability of CIA predictions across stimuli, tasks, populations, and measures of interest, (ii) contribute to specifying the outcomes and mechanisms of detecting and indexing incongruent representations within the CIA, and (iii) speak to current efforts to understand the sources of variability in sentence comprehension.}, language = {en} } @masterthesis{Zolotarenko2020, type = {Bachelor Thesis}, author = {Zolotarenko, Olha}, title = {Visualization approaches for coherence relations}, doi = {10.25932/publishup-51699}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-516997}, school = {Universit{\"a}t Potsdam}, year = {2020}, abstract = {Die hier vorliegende Arbeit stellt einen Versuch dar, den Visualisierungsans{\"a}tzen in dem Feld der annotierten Diskursrelationen nahezukommen und durch Vergleich verschiedener Programmierwerkzeuge eine anforderungsnahe L{\"o}sung zu finden. Als Gegenstand der Forschung wurden Koh{\"a}renzrelationen ausgew{\"a}hlt, welche eine Reihe an Eigenschaften aufweisen, die f{\"u}r viele Visualisierungsmethoden herausfordernd sein k{\"o}nnen. Die Arbeit stellt f{\"u}nf verschiedene Visualisierungsm{\"o}glichkeiten sowohl von der Anwendungs- als auch von der Entwicklungsperspektive vor. Die zun{\"a}chst getesteten einfachen HTML-Ans{\"a}tze sowie das Softwarepaket displaCy zeigen das unzureichende Niveau f{\"u}r die Visualisierungszwecke dieser Arbeit. Die alternative Implementierung mit D3 w{\"u}rde die Voraussetzungen zwar optimal erf{\"u}llen, sprengt aber deutlich den Rahmen des Projektes. Die gew{\"a}hlte Hauptmethode wurde als Single-Web-Anwendung konzipiert und verwendet das Annotationstool brat, welches die meisten definierten Voraussetzungen f{\"u}r die Repr{\"a}sentation der Koh{\"a}renzrelationen erf{\"u}llt. Die Anwendung stellt die im Text annotierten Koh{\"a}renzrelationen graphisch dar und bietet eine Filterfunktion f{\"u}r verschiedene Relationstypen an.}, language = {en} } @misc{ZollDiehlSiebert2019, author = {Zoll, Felix and Diehl, Katharina and Siebert, Rosemarie}, title = {Integrating sustainability goals in innovation processes}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {1036}, issn = {1866-8372}, doi = {10.25932/publishup-47342}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-473420}, pages = {17}, year = {2019}, abstract = {The innovative dual-purpose chicken approach aims at contributing to the transition towards sustainable poultry production by avoiding the culling of male chickens. To successfully integrate sustainability aspects into innovation, goal congruency among actors and clearly communicating the added value within the actor network and to consumers is needed. The challenge of identifying common sustainability goals calls for decision support tools. The objectives of our research were to investigate whether the tool could assist in improving communication and marketing with respect to sustainability and optimizing the value chain organization. Three actor groups participated in the tool application, in which quantitative and qualitative data were collected. The results showed that there were manifold sustainability goals within the innovation network, but only some goals overlapped, and the perception of their implementation also diverged. While easily marketable goals such as 'animal welfare' were perceived as being largely implemented, economic goals were prioritized less often, and the implementation was perceived as being rather low. By visualizing congruencies and differences in the goals, the tool helped identify fields of action, such as improved information flows and prompted thinking processes. We conclude that the tool is useful for managing complex decision processes with several actors involved.}, language = {en} } @misc{ZoicasSchumacherKleuseretal.2020, author = {Zoicas, Iulia and Schumacher, Fabian and Kleuser, Burkhard and Reichel, Martin and Gulbins, Erich and Fejtova, Anna and Kornhuber, Johannes and Rhein, Cosima}, title = {The forebrain-specific overexpression of acid sphingomyelinase induces depressive-like symptoms in mice}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {5}, issn = {1866-8372}, doi = {10.25932/publishup-52436}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-524368}, pages = {14}, year = {2020}, abstract = {Human and murine studies identified the lysosomal enzyme acid sphingomyelinase (ASM) as a target for antidepressant therapy and revealed its role in the pathophysiology of major depression. In this study, we generated a mouse model with overexpression of Asm (Asm-tg(fb)) that is restricted to the forebrain to rule out any systemic effects of Asm overexpression on depressive-like symptoms. The increase in Asm activity was higher in male Asm-tg(fb) mice than in female Asm-tg(fb) mice due to the breeding strategy, which allows for the generation of wild-type littermates as appropriate controls. Asm overexpression in the forebrain of male mice resulted in a depressive-like phenotype, whereas in female mice, Asm overexpression resulted in a social anxiogenic-like phenotype. Ceramides in male Asm-tg(fb) mice were elevated specifically in the dorsal hippocampus. mRNA expression analyses indicated that the increase in Asm activity affected other ceramide-generating pathways, which might help to balance ceramide levels in cortical brain regions. This forebrain-specific mouse model offers a novel tool for dissecting the molecular mechanisms that play a role in the pathophysiology of major depression.}, language = {en} } @misc{ZochLesniakDobberkeSchlittetal.2020, author = {Zoch-Lesniak, Beate and Dobberke, Jeanette and Schlitt, Axel and Bongarth, Christa and Glatz, Johannes and Sp{\"o}rl-D{\"o}nch, Sieglinde and Koran, Iryna and V{\"o}ller, Heinz and Salzwedel, Annett}, title = {Performance Measures for Short-Term Cardiac Rehabilitation in Patients of Working Age}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, issn = {1866-8364}, doi = {10.25932/publishup-47392}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-473922}, pages = {16}, year = {2020}, abstract = {Objective: To determine immediate performance measures for short-term, multicomponent cardiac rehabilitation (CR) in clinical routine in patients of working age, taking into account cardiovascular risk factors, physical performance, social medicine, and subjective health parameters and to explore the underlying dimensionality. Design: Prospective observational multicenter register study in 12 rehabilitation centers throughout Germany. Setting: Comprehensive 3-week CR.}, language = {en} } @misc{ZitzmannWarschburger2018, author = {Zitzmann, Jana and Warschburger, Petra}, title = {Psychometric properties of figure rating scales in children}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {487}, issn = {1866-8364}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-416871}, pages = {11}, year = {2018}, abstract = {This study examined psychometric properties of figure rating scales, particularly the effects of ascending silhouette ordering, in 153 children, 9 to 13 years old. Two versions of Collins's (1991) figural rating scale were presented: the original scale (figures arranged ascendingly) and a modified version (randomized figure ordering. Ratings of current and ideal figure were elicited and body dissatisfaction was calculated. All children were randomly assigned to one of two subgroups and completed both scale versions in a different sequence. There were no significant differences in figure selection and body dissatisfaction between the two figure orderings. Regarding the selection of the current figure, results showed that girls are more affected by the silhouette ordering than boys. Our results suggest that figure rating scales are both valid and reliable, whereby correlation coefficients reveal greater stability for ideal figure selections and body dissatisfaction ratings when using the scale with ascending figure ordering.}, language = {en} } @misc{ZinkeWarnkeGaebleretal.2019, author = {Zinke, Fridolin and Warnke, Torsten and G{\"a}bler, Martijn and Granacher, Urs}, title = {Effects of Isokinetic Training on Trunk Muscle Fitness and Body Composition in World-Class Canoe Sprinters}, series = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, number = {536}, issn = {1866-8364}, doi = {10.25932/publishup-42489}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-424898}, year = {2019}, abstract = {In canoe sprint, the trunk muscles play an important role in stabilizing the body in an unstable environment (boat) and in generating forces that are transmitted through the shoulders and arms to the paddle for propulsion of the boat. Isokinetic training is well suited for sports in which propulsion is generated through water resistance due to similarities in the resistive mode. Thus, the purpose of this study was to determine the effects of isokinetic training in addition to regular sport-specific training on trunk muscular fitness and body composition in world-class canoeists and to evaluate associations between trunk muscular fitness and canoe-specific performance. Nine world-class canoeists (age: 25.6 ± 3.3 years; three females; four world champions; three Olympic gold medalists) participated in an 8-week progressive isokinetic training with a 6-week block "muscle hypertrophy" and a 2-week block "muscle power." Pre- and post-tests included the assessment of peak isokinetic torque at different velocities in concentric (30 and 140∘s-1) and eccentric (30 and 90∘s-1) mode, trunk muscle endurance, and body composition (e.g., body fat, segmental lean mass). Additionally, peak paddle force was assessed in the flume at a water current of 3.4 m/s. Significant pre-to-post increases were found for peak torque of the trunk rotators at 30∘s-1 (p = 0.047; d = 0.4) and 140∘s-1 (p = 0.014; d = 0.7) in concentric mode. No significant pre-to-post changes were detected for eccentric trunk rotator torque, trunk muscle endurance, and body composition (p > 0.148). Significant medium-to-large correlations were observed between concentric trunk rotator torque but not trunk muscle endurance and peak paddle force, irrespective of the isokinetic movement velocity (all r ≥ 0.886; p ≤ 0.008). Isokinetic trunk rotator training is effective in improving concentric trunk rotator strength in world-class canoe sprinters. It is recommended to progressively increase angular velocity from 30∘s-1 to 140∘s-1 over the course of the training period.}, language = {en} } @misc{ZimmermannWilkeHornConradetal.2020, author = {Zimmermann, Matthias and Wilke, Monika and Horn-Conrad, Antje and Kampe, Heike and Scholz, Jana}, title = {Portal Wissen = Energy}, editor = {Engel, Silke and Zimmermann, Matthias}, organization = {University of Potsdam, Press and Public Relations Department}, issn = {2198-9974}, doi = {10.25932/publishup-47297}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472978}, pages = {58}, year = {2020}, abstract = {Energy - there is something to it. There is, of course, the matter-of-fact definition in every student encyclopedia: "the capacity to do mechanical work, transfer heat, or emit light." In this way, energy accompanies us, often undetected, all day long: getting out of bed, turning on the heat, switching on the lights, taking a hot shower, getting dressed, making coffee, having breakfast - before we have even left the house, we have already released, transformed, applied, and refueled a lot of energy. And we haven't even worked, at least not in the traditional sense. But energy is not just a physical quantity that, due to its omnipresence, plays a key role in every natural science discipline, such as biology and chemistry, but also in almost every technical field. It is also indispensable when it comes to how we understand and describe our world and our activities - and it has been for a long time. How about an example? The Greek philosopher Aristotle was the first to speak of en{\´e}rgeia, for him a rather nonphysical thing, a living "reality and effectiveness " - that which makes the possible real. About 2,100 years later, the uncrowned king of German literature Johann Wolfgang von Goethe declared it to be a humanistic essence. "What can we call our own if not energy, strength, and will!" And for his contemporary Wilhelm von Humboldt, energy "was the human's first and only virtue". Although physics began to dominate the concept of energy when it became the leading science in the 19th century, energy remained significant in many areas. Reason enough for us to take a look at energy-related matters at the University of Potsdam. We found them in a wide range of disciplines: While Iranian physicist Safa Shoaee is researching how organic materials can be used to manufacture the solar cells of the future, Swedish environmental researcher Johan Lilliestam is focusing on the different dimensions of the energy transition to learn what makes it successful. Slavicist Susanne Str{\"a}tling, on the other hand, crosses the boundaries of her discipline as she examines a complex conceptual history and tries to find out why energy electrifies us today more than ever. And physicist Markus G{\"u}hr is able to use ultrashort flashes of light to investigate how molecules change under its influence and convert energy in the process. Of course, we have enough energy to highlight the diversity of research at the University of Potsdam besides the feature topic of this issue. A cognitive researcher, for example, explains why our brain processes both music and language according to its own respective rhythm, while an environmental researcher presents a method that uses particles from outer space to measure soil moisture. Educational researchers have also launched a study on hate speech in schools and we introduce a palaeoclimatologist who is one of twelve researchers in the new postdoc program at the University of Potsdam. We have spared no energy!}, language = {en} } @misc{ZimmermannScholzEckardtetal.2018, author = {Zimmermann, Matthias and Scholz, Jana and Eckardt, Barbara and Kampe, Heike and G{\"o}rlich, Petra and Horn-Conrad, Antje}, title = {Portal Wissen = Language}, number = {01/2018}, organization = {University of Potsdam, Press and Public Relations Department}, issn = {2198-9974}, doi = {10.25932/publishup-44166}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-441666}, pages = {53}, year = {2018}, abstract = {Language is perhaps the most universal tool of human beings. It enables us to express ourselves, to communicate and understand, to help and get help, to create and share togetherness. However, that does not completely capture the value of language. "Language belongs to the character of man," said the English philosopher Sir Francis Bacon. If you believe the poet Johann Gottfried von Herder, a human is "only a human through language". Ultimately, this means that we live in our world not with, but in, language. We not only describe our reality by means of language, but language is the device through which we open up the world in the first place. It is always there and shapes and influences us and the way we perceive, analyze, describe and ultimately determine everything around us. Since it is so deeply connected with human nature, it is hardly surprising that our language has always been in the center of academic research - and not only in those fields that bear the name linguistics. Philosophy and media studies, neurology and psychology, computer science and semiotics - all of them are based on linguistic structures and their premises and possibilities. Since July 2017, a scientific network at the University of Potsdam has been working on exactly this interface: the Collaborative Research Center "Limits of Variability in Language" (SFB 1287), funded by the German Research Foundation (DFG). Linguists, computer scientists, psychologists, and neurologists examine where language is or is not flexible. They hope to find out more about individual languages and their connections. In this issue of Portal Wissen, we asked SFB spokeswoman Isabell Wartenburger and deputy spokesman Malte Zimmermann to talk about language, its variability and limits, and how they investigate these aspects. We also look over the shoulders of two researchers who are working on sub-projects: Germanist Heike Wiese and her team examine whether the pandemonium of the many different languages spoken at a weekly market in Berlin is creating a new language with its own rules. Linguist Doreen Georgi embarks on a typological journey around the world comparing about 30 languages to find out if they have common limits. We also want to introduce other research projects at the University of Potsdam and the people behind them. We talk to biologists about biodiversity and ecological dynamics, and the founders of the startup "visionYOU" explain how entrepreneurship can be combined with social responsibility. Other discussions center round the effective production of antibodies and the question of whether the continued use of smartphones will eventually make us speechless. But do not worry: we did not run out of words - the magazine is full of them! Enjoy your reading! The Editors}, language = {en} } @article{ZimmermannScholzAgrofylaxetal.2023, author = {Zimmermann, Matthias and Scholz, Jana and Agrofylax, Luisa and Engel, Silke and Kampe, Heike and Mikulla, Stefanie}, title = {Portal Wissen = Learning}, series = {Portal Wissen: The research magazine of the University of Potsdam}, journal = {Portal Wissen: The research magazine of the University of Potsdam}, number = {01/2023}, issn = {2198-9974}, doi = {10.25932/publishup-61146}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-611464}, pages = {58}, year = {2023}, abstract = {Changing through learning is one of the most important characteristics we humans have. We are born and can - it seems - do nothing. We have to comprehend, copy, and acquire everything: grasping and walking, eating and speaking. Of course, we also have to read and do number work. In the meantime, we know: We will never be able to finish this. At best, we learn for a lifetime. If we stop, it harms us. The Greek philosopher Plato said more than 2,400 years ago, "There is no shame in not knowing something. The shame is in not being willing to learn." As humans we are also capable of learning; thanks to more and more knowledge about the world around us, we have moved from the Stone Age into the digital age. That this development is not a finish line either, but that we still have a long way to go, is shown by man-made climate change - and above all by our inability as a global community to translate what research teaches us into appropriate actions. Let us dare to hope that we also comprehend this. What we tend to ignore in the intensive discussion about the multi-layered levels of learning: We are by no means the only learners. Many, if not all, living beings on our planet learn, some more in a more purposeful and complex and more cognitive way than others. And for some time now, machines have also been able to learn more or less independently. Artificial intelligence sends its regards. The significance of learning for human beings can hardly be overestimated. Science has also understood this and has discovered the learning processes and conditions in almost all contexts for itself, no matter whether it is about our own learning processes and conditions or those around us. We have investigated some of these for the current issue of "Portal Wissen". Psycholinguist Natalie Boll-Avetisyan has developed a box that can be used to detect language learning disorders already in young children. The behavioral biologists Jana Eccard and Valeria Mazza investigated the behavior of small rodents and found out that they do not only develop different personality traits but they also described how they learn to adapt them different environmental conditions. Computer linguist David Schlangen examines the question what machines have to learn so that our communication with them works even better. Since research is ultimately always a learning process that strives to understand something yet unknown, this time all texts are somehow along the motto of the title theme: It is about what the history of past centuries reveals about "military cultures of violence" and the question of what lessons we should learn from natural hazards for the future. We talked with a legal scholar who looks beyond the university's backyard and wants to make law comprehensible to everyone. We also talked with a philosopher who analyzes why "having an opinion" means something different today than 100 years ago. We report about an AI-based genome analysis that can change healthcare sustainably. Furthermore, it is about the job profile "YouTuber", minor cosmopolitanisms, and wildlife management in Africa. When you have finished reading, you will have learnt something. Promised! Enjoy your read!}, language = {en} } @misc{ZimmermannMikullaKampeetal.2021, author = {Zimmermann, Matthias and Mikulla, Stefanie and Kampe, Heike and Horn-Conrad, Antje and Lass, Sander}, title = {Portal Wissen = Departure}, number = {02/2021}, organization = {University of Potsdam, Press and Public Relations Department}, issn = {2198-9974}, doi = {10.25932/publishup-53713}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-537138}, pages = {54}, year = {2021}, abstract = {On October 20, 1911, the Norwegian Roald Amundsen left the safe base camp "Framheim" at the Bay of Whales together with four other explorers and 52 sledge dogs to be the first person to reach the South Pole. Ahead of them lay the perpetual ice at temperatures of 20 to 30 degrees Celsius below zero and a distance of 1,400 kilometers. After eight weeks, the group reached its destination on December 13. The men planted the Norwegian flag in the lonely snow and shortly afterwards set off to make their way back - celebrated, honored as conquerors of the South Pole and laden with information and knowledge from the world of Antarctica. The voyage of Amundsen and his companions is undoubtedly so extraordinary because the five proved that it was possible and were the first to succeed. It is, however, also a symbol of what enables humans to push the boundaries of their world: the urge to set out into the unknown, to discover what has not yet been found, explored, and described. What distinguishes science - even before each discovery and new knowledge - is the element of departure. Questioning apparent certainties, taking a critical look at outdated knowledge, and breaking down encrusted thought patterns is the starting point of exploratory curiosity. And to set out from there for new knowledge is the essence of scientific activities - neither protected nor supported by the reliable and known. Probing, trying, courageously questioning, and sensing that the solid ground, which still lies hidden, can only be reached again in this way. "Research is always a departure for new shoreless waters," said chemist Prof. Dr. Hans-J{\"u}rgen Quadbeck-Seeger. Leaving behind the safe harbor, trusting that new shores are waiting and can be reached is the impetus that makes science so important and valuable. For the current issue of the University of Potsdam's research magazine, we looked over the shoulders of some researchers as they set out on new research journeys - whether in the lab, in the library, in space, or in the mind. Astrophysicist Lidia Oskinova, for example, uses the Hubble telescope to search for particularly massive stars, while hydrologist Thorsten Wagener is trying to better understand the paths of water on Earth. Economists and social scientists such as Elmar Kriegler and Maik Heinemann are researching in different projects what politics can do to achieve a turnaround in climate policy and stop climate change. Time and again, however, such departures are themselves the focus of research: And a group of biologists and environmental scientists is investigating how nature revives forest fire areas and how the newly emerging forests can become more resilient to future fires. Since - as has already been said - a departure is inherent in every research question, this time the entire issue of "Portal Wissen" is actually devoted to the cover topic. And so we invite you to set out with Romance linguist Annette Gerstenberg to research language in old age, with immunologist Katja Hanack to develop a quick and safe SARS-CoV-2 test, and with the team of the Potsdam Center for Industry 4.0 to the virtual factory of tomorrow. And we will show you how evidence- based economic research can inform and advise politicians, and how a warning system is intended to prevent future accidents involving cyclists. So, what are you waiting for?!}, language = {en} } @misc{ZimmermannHornConradMikullaetal.2022, author = {Zimmermann, Matthias and Horn-Conrad, Antje and Mikulla, Stefanie and Kampe, Heike and Scholz, Jana}, title = {Portal Wissen = Together}, number = {01/2022}, address = {Potsdam}, organization = {University of Potsdam, Press and Public Relations Department}, issn = {2198-9974}, doi = {10.25932/publishup-56294}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-562942}, pages = {58}, year = {2022}, abstract = {What makes humans human - and what distinguishes them from other creatures on Earth - has long been fervently discussed and is still being discussed today. "Homo sapiens", the scientific self-description of our species, is already the characterization as an "understanding, wise, knowledgeable human being". It could be argued that we owe this additional knowledge to our trait of (basically) feeling particularly attached to our equals. We are what we are, above all, and perhaps even exclusively: together. The development that eventually turned communities into societies in the course of which culture and knowledge emerged, could well be told as a story of more and less togetherness. People were always successful when they lived with instead of against each other. Things that were much admired later came into being when people worked together, knowledge that made history as progress was developed by minds that came into a conversation. It is therefore all the more surprising that this "recipe for success" is being pushed into the background at a time when it is needed more than ever. As a result of the Corona pandemic, we are living in a time in which the world is faced with a - literally - all-encompassing task which it can only overcome together, as has already been said many times. And yet, many people are primarily concerned about their own well-being in various ways - not infrequently without reflecting that the well-being of many others, and possibly ultimately even their own, suffers as a consequence. When there is a need for more togetherness while there is a lot of talk about division, it becomes clear that the success of togetherness is not a foregone conclusion: If we want to achieve something together, we must always keep talking about the goals and the way to get there. For this issue, we have collected what people can achieve together and how research is trying to fathom the "secret of togetherness" in many ways. We visited a team of environmental scientists who are developing forest gardens together with committed residents - as green oases in the middle of cities. We took a first look at the prototype of a national education platform that will bundle all kinds of digital learning in the future. We also present a model project that aims to help teachers and students prevent hate speech. Last but not least, the issue presents a small selection of various collaborations across disciplinary and national borders: We show how researchers from law and political science are working together to examine the ups and downs of international law, and why religious studies scholars from Potsdam and Iraq benefit from each other. Of course, the issue also brings together the entire spectrum of research at the University of Potsdam, we promise! We found out how heavy rain turn into flash floods and how to prepare for such events. We interviewed a migration researcher and visited a geoscientist who is drawn to mountains and valleys alike. It's about - often unwritten - "body rules" in everyday life, the exploration of our gaze with the help of artificial intelligence, 33 answers full of complexity, and about mathematics at infinity. Enough words. Read for yourself - alone or together. Just as you like!}, language = {en} } @misc{ZimmermannHornConradGoerlichetal.2019, author = {Zimmermann, Matthias and Horn-Conrad, Antje and G{\"o}rlich, Petra and Schlegel, Karoline and Kampe, Heike}, title = {Portal Wissen = Artificial intelligence}, number = {01/2019}, editor = {Engel, Silke and Zimmermann, Matthias}, address = {54}, organization = {University of Potsdam, Press and Public Relations Department}, issn = {2198-9974}, doi = {10.25932/publishup-44246}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-442469}, year = {2019}, abstract = {For a long time, there were things on this planet that only humans could do, but this time might be coming to an end. By using the universal tool that makes us unique - our intelligence - we have worked to eliminate our uniqueness, at least when it comes to solving cognitive tasks. Artificial intelligence is now able to play chess, understand language, and drive a car - and often better than we. How did we get here? The philosopher Aristotle formulated the first "laws of thought" in his syllogisms, and the mathematicians Blaise Pascal and Wilhelm Leibniz built some of the earliest calculating machines. The mathematician George Boole was the first to introduce a formal language to represent logic. The natural scientist Alan Turing created his deciphering machine "Colossus," the first programmable computer. Philosophers, mathematicians, psychologists, and linguists - for centuries, scientists have been developing formulas, machines, and theories that were supposed to enable us to reproduce and possibly even enhance our most valuable ability. But what exactly is "artificial intelligence"? Even the name calls for comparison. Is artificial intelligence like human intelligence? Alan Turing came up with a test in 1950 to provide a satisfying operational definition of intelligence: According to him, a machine is intelligent if its thinking abilities equal those of humans. It has to reach human levels for any cognitive task. The machine has to prove this by convincing a human interrogator that it is human. Not an easy task: After all, it has to process natural language, store knowledge, draw conclusions, and learn something new. In fact, over the past ten years, a number of AI systems have emerged that have passed the test one way or another in chat conversations with automatically generated texts or images. Nowadays, the discussion usually centers on other questions: Does AI still need its creators? Will it not only outperform humans but someday replace them - be it in the world of work or even beyond? Will AI solve our problems in the age of all-encompassing digital networking - or will it become a part of the problem? Artificial intelligence, its nature, its limitations, its potential, and its relationship to humans were being discussed even before it existed. Literature and film have created scenarios with very different endings. But what is the view of the scientists who are actually researching with or about artificial intelligence? For the current issue of our research magazine, a cognitive scientist, an education researcher, and a computer scientist shared their views. We also searched the University for projects whose professional environment reveals the numerous opportunities that AI offers for various disciplines. We cover the geosciences and computer science as well as economics, health, and literature studies. At the same time, we have not lost sight of the broad research spectrum at the University: a legal expert introduces us to the not-so-distant sphere of space law while astrophysicists work on ensuring that state-of-the-art telescopes observe those regions in space where something "is happening" at the right time. A chemist explains why the battery of the future will come from a printer, and molecular biologists explain how they will breed stress-resistant plants. You will read about all this in this issue as well as about current studies on restless legs syndrome in children and the situation of Muslims in Brandenburg. Last but not least, we will introduce you to the sheep currently grazing in Sanssouci Park - all on behalf of science. Quite clever! Enjoy your read! THE EDITORS}, language = {en} } @misc{ZimmermannAgrofylaxScholzetal.2022, author = {Zimmermann, Matthias and Agrofylax, Luisa and Scholz, Jana and Kampe, Heike and Horn-Conrad, Antje and Mikulla, Stefanie}, title = {Portal Wissen = Humans}, series = {Portal Wissen: The research magazine of the University of Potsdam}, journal = {Portal Wissen: The research magazine of the University of Potsdam}, number = {02/2022}, issn = {2198-9974}, doi = {10.25932/publishup-56584}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-565843}, pages = {58}, year = {2022}, abstract = {When humans write and talk about humans, you notice right away: It's their favorite topic. It is not only that everyone (usually) is closest to themselves. As a species, Homo sapiens also attaches distinct importance to themselves. Aristotle was concerned about the order of things and ranked the human being - as the seemingly most complicated one - at the "very top." The book of Genesis in the Bible seems to take this up, calling the human being in a way the final point or "pride of creation" who should "rule" over Earth and all living beings. An impressive story, but it did not stand the test of time. The theory of evolution changed the pyramid into a far-branched tree and the human being to a little branch among many others. What has remained is that humans are not so easy to understand, especially to themselves. Or, as Marie von Ebner-Eschenbach said, "The simplest human is still a very complicated being." This and the ongoing interest of humans in themselves ensure that many sciences also deal with him, her, or us, again and again and from every conceivable angle. Medicine and linguistics, educational research and psychology, history and sociology - many disciplines revolve around human(kind) and their actions. Therefore, it is hardly difficult to take a small exemplary human research journey through the University of Potsdam with this issue of "Portal Wissen." We begin with a visit to the BabyLAB, where you can rewardingly watch even the youngest children learn languages. An economist points out that differences between men and women on their paychecks are anything but acceptable, and a start-up team showed us an app that can help you do something against dementia before it's too late. Besides, it should have been clear long ago: If we want to understand ourselves, we must always look at what is surrounding us. This means the social interactions that challenge and shape us on both a small and large scale. That's why we talked to historians who are investigating corruption in the ancient world. But it also includes the environment, both living and non-living, on which we leave our mark and which, in turn, constantly influences us. A specialist in ancient DNA, for example, is investigating whether even Neanderthals left an ecological footprint, while an ecologist is searching for the consequences of climate change for biodiversity in Africa. And a media scientist has spent years analyzing how various images can help communicate scientific findings on climate change in such a way that they are understood. We have not forgotten that the coronavirus continues to influence both our lives and research: A psychologist is working with partners throughout Germany to study how children and young people with chronic diseases get through the pandemic. In addition, we naturally do not leave aside the diversity of research - created by humans - at the University of Potsdam: We introduce one of Germany's best gravitational wave researcher and talk about the role of mathematics in earthquake research. Last but not least, we had the work of the new research center for digital data law explained to us.}, language = {en} } @misc{ZimmermannStompsSchulteOsseilietal.2020, author = {Zimmermann, Marc and Stomps, Benjamin Ren{\´e} Harald and Schulte-Osseili, Christine and Grigoriev, Dmitry and Ewen, Dirk and Morgan, Andrew and B{\"o}ker, Alexander}, title = {Organic dye anchor peptide conjugates as an advanced coloring agent for polypropylene yarn}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1-2}, issn = {1866-8372}, doi = {10.25932/publishup-54891}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-548913}, pages = {14}, year = {2020}, abstract = {Polypropylene as one of the world's top commodity polymers is also widely used in the textile industry. However, its non-polar nature and partially crystalline structure significantly complicate the process of industrial coloring of polypropylene. Currently, textiles made of polypropylene or with a significant proportion of polypropylene are dyed under quite harsh conditions, including the use of high pressures and temperatures, which makes this process energy intensive. This research presents a three-step synthesis of coloring agents, capable of adhering onto synthetic polypropylene yarns without harsh energy-consuming conditions. This is possible by encapsulation of organic pigments using trimethoxyphenylsilane, introduction of surface double bonds via modification of the silica shell with trimethoxysilylpropylmethacrylate and final attachment of highly adhesive anchor peptides using thiol-ene chemistry. We demonstrate the applicability of this approach by dyeing polypropylene yarns in a simple process under ambient conditions after giving a step-by-step guide for the synthesis of these new dyeing agents. Finally, the successful dyeing of the yarns is visualized, and its practicability is discussed.}, language = {en} } @phdthesis{Zimmermann2018, author = {Zimmermann, Marc}, title = {Multifunctional patchy silica particles via microcontact printing}, doi = {10.25932/publishup-42773}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427731}, school = {Universit{\"a}t Potsdam}, pages = {IX, 121, xiii}, year = {2018}, abstract = {This research addressed the question, if it is possible to simplify current microcontact printing systems for the production of anisotropic building blocks or patchy particles, by using common chemicals while still maintaining reproducibility, high precision and tunability of the Janus-balance Chapter 2 introduced the microcontact printing materials as well as their defined electrostatic interactions. In particular polydimethylsiloxane stamps, silica particles and high molecular weight polyethylenimine ink were mainly used in this research. All of these components are commercially available in large quantities and affordable, which gives this approach a huge potential for further up-scaling developments. The benefits of polymeric over molecular inks was described including its flexible influence on the printing pressure. With this alteration of the µCP concept, a new method of solvent assisted particle release mechanism enabled the switch from two-dimensional surface modification to three-dimensional structure printing on colloidal silica particles, without changing printing parameters or starting materials. This effect opened the way to use the internal volume of the achieved patches for incorporation of nano additives, introducing additional physical properties into the patches without alteration of the surface chemistry. The success of this system and its achievable range was further investigated in chapter 3 by giving detailed information about patch geometry parameters including diameter, thickness and yield. For this purpose, silica particles in a size range between 1µm and 5µm were printed with different ink concentrations to change the Janus-balance of these single patched particles. A necessary intermediate step, consisting of air-plasma treatment, for the production of trivalent particles using "sandwich" printing was discovered and comparative studies concerning the patch geometry of single and double patched particles were conducted. Additionally, the usage of structured PDMS stamps during printing was described. These results demonstrate the excellent precision of this approach and opens the pathway for even greater accuracy as further parameters can be finely tuned and investigated, e.g. humidity and temperature during stamp loading. The performance of these synthesized anisotropic colloids was further investigated in chapter 4, starting with behaviour studies in alcoholic and aqueous dispersions. Here, the stability of the applied patches was studied in a broad pH range, discovering a release mechanism by disabling the electrostatic bonding between particle surface and polyelectrolyte ink. Furthermore, the absence of strong attractive forces between divalent particles in water was investigated using XPS measurements. These results lead to the conclusion that the transfer of small PDMS oligomers onto the patch surface is shielding charges, preventing colloidal agglomeration. However, based on this knowledge, further patch modifications for particle self-assembly were introduced including physical approaches using magnetic nano additives, chemical patch functionalization with avidin-biotin or the light responsive cyclodextrin-arylazopyrazoles coupling as well as particle surface modification for the synthesis of highly amphiphilic colloids. The successful coupling, its efficiency, stability and behaviour in different solvents were evaluated to find a suitable coupling system for future assembly experiments. Based on these results the possibility of more sophisticated structures by colloidal self-assembly is given. Certain findings needed further analysis to understand their underlying mechanics, including the relatively broad patch diameter distribution and the decreasing patch thickness for smaller silica particles. Mathematical assumptions for both effects are introduced in chapter 5. First, they demonstrate the connection between the naturally occurring particle size distribution and the broadening of the patch diameter, indicating an even higher precision for this µCP approach. Second, explaining the increase of contact area between particle and ink surface due to higher particle packaging, leading to a decrease in printing pressure for smaller particles. These calculations ultimately lead to the development of a new mechanical microcontact printing approach, using centrifugal forces for high pressure control and excellent parallel alignment of printing substrates. First results with this device and the comparison with previously conducted by-hand experiments conclude this research. It furthermore displays the advantages of such a device for future applications using a mechanical printing approach, especially for accessing even smaller nano particles with great precision and excellent yield. In conclusion, this work demonstrates the successful adjustment of the µCP approach using commercially available and affordable silica particles and polyelectrolytes for high flexibility, reduced costs and higher scale-up value. Furthermore, its was possible to increase the modification potential by introducing three-dimensional patches for additional functionalization volume. While keeping a high colloidal stability, different coupling systems showed the self-assembly capabilities of this toolbox for anisotropic particles.}, language = {en} } @misc{ZimmermannDeVeaughGeissToennisetal.2020, author = {Zimmermann, Malte and De Veaugh-Geiss, Joseph P. and T{\"o}nnis, Swantje and Onea, Edgar}, title = {(Non-)exhaustivity in focus partitioning across languages}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, volume = {16}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, issn = {1866-8364}, doi = {10.25932/publishup-52467}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-524677}, pages = {26}, year = {2020}, abstract = {We present novel experimental evidence on the availability and the status of exhaustivity inferences with focus partitioning in German, English, and Hungarian. Results suggest that German and English focus-background clefts and Hungarian focus share important properties, ({\´E}. Kiss 1998, 1999; Szabolcsi 1994; Percus 1997; Onea \& Beaver 2009). Those constructions are anaphoric devices triggering an existence presupposition. EXH-inferences are not obligatory in such constructions in English, German, or Hungarian, against some previous literature (Percus 1997; B{\"u}ring \& Križ 2013; {\´E}. Kiss 1998), but in line with pragmatic analyses of EXH-inferences in clefts (Horn 1981, 2016; Pollard \& Yasavul 2016). The cross-linguistic differences in the distribution of EXH-inferences are attributed to properties of the Hungarian number marking system.}, language = {en} } @article{Zimmermann2019, author = {Zimmermann, Malte}, title = {Im Korpus gibt's keine V{\"o}gel nicht}, series = {Of trees and birds. A Festschrift for Gisbert Fanselow}, journal = {Of trees and birds. A Festschrift for Gisbert Fanselow}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-457-9}, doi = {10.25932/publishup-43254}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-432541}, pages = {287 -- 306}, year = {2019}, language = {en} } @misc{Zimmermann2011, author = {Zimmermann, Malte}, title = {The grammatical expression of focus in West Chadic}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-93617}, pages = {1163 -- 1213}, year = {2011}, abstract = {The article provides an overview of the grammatical realization of focus in four West Chadic languages (Chadic, Afro-Asiatic). The languages discussed exhibit an intriguing crosslinguistic variation in the realization of focus, both among themselves as well as compared to European intonation languages. They also display language-internal variation in the formal realization of focus. The West Chadic languages differ widely in their ways of expressing focus, which range from syntactic over prosodic to morphological devices. In contrast to European intonation languages, the focus marking systems of the West Chadic languages are inconsistent in that focus is often not grammatically expressed, but these inconsistencies are shown to be systematic. Subject foci (contrastive or not) and contrastive nonsubject foci are always grammatically marked, whereas information focus on nonsubjects need not be marked as such. The absence of formal focus marking supports pragmatic theories of focus in terms of contextual resolution. The special status of focused subjects and contrastive foci is derived from the Contrastive Focus Hypothesis, which requires unexpected foci and unexpected focus contents to be marked as such, together with the assumption that canonical subjects in West Chadic receive a default interpretation as topics. Finally, I discuss certain focus ambiguities which are not attested in intonation languages, nor do they follow on standard accounts of focus marking, but which can be accounted for in terms of constraint interaction in the formal expression of focus.}, language = {en} } @misc{ZimmermannStoofLeichsenringKruseetal.2020, author = {Zimmermann, Heike Hildegard and Stoof-Leichsenring, Kathleen Rosemarie and Kruse, Stefan and M{\"u}ller, Juliane and Stein, Ruediger and Tiedemann, Ralf and Herzschuh, Ulrike}, title = {Changes in the composition of marine and sea-ice diatoms derived from sedimentary ancient DNA of the eastern Fram Strait over the past 30 000 years}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {5}, issn = {1866-8372}, doi = {10.25932/publishup-52515}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-525154}, pages = {18}, year = {2020}, abstract = {The Fram Strait is an area with a relatively low and irregular distribution of diatom microfossils in surface sediments, and thus microfossil records are scarce, rarely exceed the Holocene, and contain sparse information about past richness and taxonomic composition. These attributes make the Fram Strait an ideal study site to test the utility of sedimentary ancient DNA (sedaDNA) metabarcoding. Amplifying a short, partial rbcL marker from samples of sediment core MSM05/5-712-2 resulted in 95.7 \% of our sequences being assigned to diatoms across 18 different families, with 38.6 \% of them being resolved to species and 25.8 \% to genus level. Independent replicates show a high similarity of PCR products, especially in the oldest samples. Diatom sedaDNA richness is highest in the Late Weichselian and lowest in Mid- and Late Holocene samples. Taxonomic composition is dominated by cold-water and sea-ice-associated diatoms and suggests several reorganisations - after the Last Glacial Maximum, after the Younger Dryas, and after the Early and after the Mid-Holocene. Different sequences assigned to, amongst others, Chaetoceros socialis indicate the detectability of intra-specific diversity using sedaDNA. We detect no clear pattern between our diatom sedaDNA record and the previously published IP25 record of this core, although proportions of pennate diatoms increase with higher IP25 concentrations and proportions of Nitzschia cf. frigida exceeding 2 \% of the assemblage point towards past sea-ice presence.}, language = {en} } @misc{ZimmermannRaschkeEppetal.2017, author = {Zimmermann, Heike Hildegard and Raschke, Elena and Epp, Laura Saskia and Stoof-Leichsenring, Kathleen Rosemarie and Schwamborn, Georg and Schirrmeister, Lutz and Overduin, Pier Paul and Herzschuh, Ulrike}, title = {Sedimentary ancient DNA and pollen reveal the composition of plant organic matter in Late Quaternary permafrost sediments of the Buor Khaya Peninsula (north-eastern Siberia)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {670}, issn = {1866-8372}, doi = {10.25932/publishup-41713}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-417130}, pages = {22}, year = {2017}, abstract = {Organic matter deposited in ancient, ice-rich permafrost sediments is vulnerable to climate change and may contribute to the future release of greenhouse gases; it is thus important to get a better characterization of the plant organic matter within such sediments. From a Late Quaternary permafrost sediment core from the Buor Khaya Peninsula, we analysed plant-derived sedimentary ancient DNA (sedaDNA) to identify the taxonomic composition of plant organic matter, and undertook palynological analysis to assess the environmental conditions during deposition. Using sedaDNA, we identified 154 taxa and from pollen and non-pollen palynomorphs we identified 83 taxa. In the deposits dated between 54 and 51 kyr BP, sedaDNA records a diverse low-centred polygon plant community including recurring aquatic pond vegetation while from the pollen record we infer terrestrial open-land vegetation with relatively dry environmental conditions at a regional scale. A fluctuating dominance of either terrestrial or swamp and aquatic taxa in both proxies allowed the local hydrological development of the polygon to be traced. In deposits dated between 11.4 and 9.7 kyr BP (13.4-11.1 cal kyr BP), sedaDNA shows a taxonomic turnover to moist shrub tundra and a lower taxonomic richness compared to the older samples. Pollen also records a shrub tundra community, mostly seen as changes in relative proportions of the most dominant taxa, while a decrease in taxonomic richness was less pronounced compared to sedaDNA. Our results show the advantages of using sedaDNA in combination with palynological analyses when macrofossils are rarely preserved. The high resolution of the sedaDNA record provides a detailed picture of the taxonomic composition of plant-derived organic matter throughout the core, and palynological analyses prove valuable by allowing for inferences of regional environmental conditions.}, language = {en} } @phdthesis{Zimmermann2007, author = {Zimmermann, Beate}, title = {Spatial and temporal variability of the soil saturated hydraulic conductivity in gradients of disturbance}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16402}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {As land-cover conversion continues to expand into ever more remote areas in the humid tropics, montane rainforests are increasingly threatened. In the south Ecuadorian Andes, they are not only subject to man-made disturbances but also to naturally occurring landslides. I was interested in the impact of this ecosystem dynamics on a key parameter of the hydrologic cycle, the soil saturated hydraulic conductivity (synonym: permeability; Ks from here on), because it is a sensitive indicator for soil disturbances. My general objective was to quantify the effects of the regional natural and human disturbances on the saturated hydraulic conductivity and to describe the resulting spatial-temporal patterns. The main hypotheses were: 1) disturbances cause an apparent displacement of the less permeable soil layer towards the surface, either due to a loss of the permeable surface soil after land-sliding, or as a consequence of the surface soil compaction under cattle pastures; 2) 'recovery' from disturbance, either because of landslide re-vegetation or because of secondary succession after pasture abandonment, involves an apparent displacement of the less permeable layer back towards the original depth an 3) disturbances cause a simplification of the Ks spatial structure, i.e. the spatially dependent random variation diminishes; the subsequent recovery entails the re-establishment of the original structure. In my first study, I developed a synthesis of recent geostatistical research regarding its applicability to soil hydraulic data, including exploratory data analysis and variogram estimation techniques; I subsequently evaluated the results in terms of spatial prediction uncertainty. Concerning the exploratory data analysis, my main results were: 1) Gaussian uni- and bivariate distributions of the log-transformed data; 2) the existence of significant local trends; 3) no need for robust estimation; 4) no anisotropic variation. I found partly considerable differences in covariance parameters resulting from different variogram estimation techniques, which, in the framework of spatial prediction, were mainly reflected in the spatial connectivity of the Ks-field. Ignoring the trend component and an arbitrary use of robust estimators, however, would have the most severe consequences in this respect. Regarding variogram modeling, I encouraged restricted maximum likelihood estimation because of its accuracy and independence on the selected lags needed for experimental variograms. The second study dealt with the Ks spatial-temporal pattern in the sequences of natural and man-made disturbances characteristic for the montane rainforest study area. To investigate the disturbance effects both on global means and the spatial structure of Ks, a combined design-and model-based sampling approach was used for field-measurements at soil depths of 12.5, 20, and 50 cm (n=30-150/depth) under landslides of different ages (2 and 8 years), under actively grazed pasture, fallows following pasture abandonment (2 to 25 years of age), and under natural forest. Concerning global means, our main findings were 1) global means of the soil permeability generally decrease with increasing soil depth; 2) no significant Ks differences can be observed among landslides and compared to the natural forest; 3) a distinct permeability decrease of two orders of magnitude occurs after forest conversion to pasture at shallow soil depths, and 4) the slow regeneration process after pasture abandonment requires at least one decade. Regarding the Ks spatial structure, we found that 1) disturbances affect the Ks spatial structure in the topsoil, and 2) the largest differences in spatial patterns are associated with the subsoil permeability. In summary, the regional landslide activity seems to affect soil hydrology to a marginal extend only, which is in contrast to the pronounced drop of Ks after forest conversion. We used this spatial-temporal information combined with local rain intensities to assess the partitioning of rainfall into vertical and lateral flowpaths under undisturbed, disturbed, and regenerating land-cover types in the third study. It turned out that 1) the montane rainforest is characterized by prevailing vertical flowpaths in the topsoil, which can switch to lateral directions below 20 cm depth for a small number of rain events, which may, however, transport a high portion of the annual runoff; 2) similar hydrological flowpaths occur under the landslides except for a somewhat higher probability of impermeable layer formation in the topsoil of a young landslide, and 3) pronounced differences in runoff components can be observed for the human disturbance sequence involving the development of near-surface impeding layers for 24, 44, and 8 \% of rain events for pasture, a two-year-old fallow, and a ten-year-old fallow, respectively.}, language = {en} } @techreport{ZimmermannBoos2018, type = {Working Paper}, author = {Zimmermann, Andreas and Boos, Felix}, title = {Bringing States to Justice for Crimes against Humanity}, series = {KFG Working Paper Series}, journal = {KFG Working Paper Series}, number = {12}, issn = {2509-3770}, doi = {10.25932/publishup-42203}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-422035}, pages = {24}, year = {2018}, abstract = {Draft Art. 15 CCAH attempts to strike a balance between State autonomy and robust judicial supervision. It largely follows Article 22 CERD conditioning the jurisdiction of the ICJ on prior negotiations. Hence, the substance of the clause is interpreted in light of the Court's recent case law, especially Georgia v. Russia. Besides, several issues regarding the scope ratione temporis of the compromissory clause are discussed. The article advances several proposals to further improve the current draft, addressing the missing explicit reference to State responsibility, as well as the relationship between the Court and a possible treaty body, It also proposes to recalibrate the interplay of a requirement of prior negotiations respectively the seizing of a future treaty body on the one hand and provisional measures to be indicated by the Court on the other.}, language = {en} } @phdthesis{Zimmermann2009, author = {Zimmermann, Alexander}, title = {Rainfall redistribution and change of water quality in tropical forest canopies : patterns and persistence}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32556}, school = {Universit{\"a}t Potsdam}, year = {2009}, abstract = {Motivations and research objectives: During the passage of rain water through a forest canopy two main processes take place. First, water is redistributed; and second, its chemical properties change substantially. The rain water redistribution and the brief contact with plant surfaces results in a large variability of both throughfall and its chemical composition. Since throughfall and its chemistry influence a range of physical, chemical and biological processes at or below the forest floor the understanding of throughfall variability and the prediction of throughfall patterns potentially improves the understanding of near-surface processes in forest ecosystems. This thesis comprises three main research objectives. The first objective is to determine the variability of throughfall and its chemistry, and to investigate some of the controlling factors. Second, I explored throughfall spatial patterns. Finally, I attempted to assess the temporal persistence of throughfall and its chemical composition. Research sites and methods: The thesis is based on investigations in a tropical montane rain forest in Ecuador, and lowland rain forest ecosystems in Brazil and Panama. The first two studies investigate both throughfall and throughfall chemistry following a deterministic approach. The third study investigates throughfall patterns with geostatistical methods, and hence, relies on a stochastic approach. Results and Conclusions: Throughfall is highly variable. The variability of throughfall in tropical forests seems to exceed that of many temperate forests. These differences, however, do not solely reflect ecosystem-inherent characteristics, more likely they also mirror management practices. Apart from biotic factors that influence throughfall variability, rainfall magnitude is an important control. Throughfall solute concentrations and solute deposition are even more variable than throughfall. In contrast to throughfall volumes, the variability of solute deposition shows no clear differences between tropical and temperate forests, hence, biodiversity is not a strong predictor of solute deposition heterogeneity. Many other factors control solute deposition patterns, for instance, solute concentration in rainfall and antecedent dry period. The temporal variability of the latter factors partly accounts for the low temporal persistence of solute deposition. In contrast, measurements of throughfall volume are quite stable over time. Results from the Panamanian research site indicate that wet and dry areas outlast consecutive wet seasons. At this research site, throughfall exhibited only weak or pure nugget autocorrelation structures over the studies lag distances. A close look at the geostatistical tools at hand provided evidence that throughfall datasets, in particular those of large events, require robust variogram estimation if one wants to avoid outlier removal. This finding is important because all geostatistical throughfall studies that have been published so far analyzed their data using the classical, non-robust variogram estimator.}, language = {en} } @phdthesis{Zillmer2003, author = {Zillmer, R{\"u}diger}, title = {Statistical properties and scaling of the Lyapunov exponents in stochastic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001147}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Die vorliegende Arbeit umfaßt drei Abhandlungen, welche allgemein mit einer stochastischen Theorie f{\"u}r die Lyapunov-Exponenten befaßt sind. Mit Hilfe dieser Theorie werden universelle Skalengesetze untersucht, die in gekoppelten chaotischen und ungeordneten Systemen auftreten. Zun{\"a}chst werden zwei zeitkontinuierliche stochastische Modelle f{\"u}r schwach gekoppelte chaotische Systeme eingef{\"u}hrt, um die Skalierung der Lyapunov-Exponenten mit der Kopplungsst{\"a}rke ('coupling sensitivity of chaos') zu untersuchen. Mit Hilfe des Fokker-Planck-Formalismus werden Skalengesetze hergeleitet, die von Ergebnissen numerischer Simulationen best{\"a}tigt werden. Anschließend wird gezeigt, daß 'coupling sensitivity' im Fall gekoppelter ungeordneter Ketten auftritt, wobei der Effekt sich durch ein singul{\"a}res Anwachsen der Lokalisierungsl{\"a}nge {\"a}ußert. Numerische Ergebnisse f{\"u}r gekoppelte Anderson-Modelle werden bekr{\"a}ftigt durch analytische Resultate f{\"u}r gekoppelte raumkontinuierliche Schr{\"o}dinger-Gleichungen. Das resultierende Skalengesetz f{\"u}r die Lokalisierungsl{\"a}nge {\"a}hnelt der Skalierung der Lyapunov-Exponenten gekoppelter chaotischer Systeme. Schließlich wird die Statistik der exponentiellen Wachstumsrate des linearen Oszillators mit parametrischem Rauschen studiert. Es wird gezeigt, daß die Verteilung des zeitabh{\"a}ngigen Lyapunov-Exponenten von der Normalverteilung abweicht. Mittels der verallgemeinerten Lyapunov-Exponenten wird der Parameterbereich bestimmt, in welchem die Abweichungen von der Normalverteilung signifikant sind und Multiskalierung wesentlich wird.}, language = {en} } @misc{ZiesemerHuettelBalderjahn2019, author = {Ziesemer, Florence and H{\"u}ttel, Alexandra and Balderjahn, Ingo}, title = {Pioneers' insights into governing social innovation for sustainable anti-consumption}, series = {Postprints der Universit{\"a}t Potsdam Wirtschafts- und Sozialwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Wirtschafts- und Sozialwissenschaftliche Reihe}, number = {116}, issn = {1867-5808}, doi = {10.25932/publishup-43940}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-439404}, pages = {16}, year = {2019}, abstract = {Transcending the conventional debate around efficiency in sustainable consumption, anti-consumption patterns leading to decreased levels of material consumption have been gaining importance. Change agents are crucial for the promotion of such patterns, so there may be lessons for governance interventions that can be learnt from the every-day experiences of those who actively implement and promote sustainability in the field of anti-consumption. Eighteen social innovation pioneers, who engage in and diffuse practices of voluntary simplicity and collaborative consumption as sustainable options of anti-consumption share their knowledge and personal insights in expert interviews for this research. Our qualitative content analysis reveals drivers, barriers, and governance strategies to strengthen anti-consumption patterns, which are negotiated between the market, the state, and civil society. Recommendations derived from the interviews concern entrepreneurship, municipal infrastructures in support of local grassroots projects, regulative policy measures, more positive communication to strengthen the visibility of initiatives and emphasize individual benefits, establishing a sense of community, anti-consumer activism, and education. We argue for complementary action between top-down strategies, bottom-up initiatives, corporate activities, and consumer behavior. The results are valuable to researchers, activists, marketers, and policymakers who seek to enhance their understanding of materially reduced consumption patterns based on the real-life experiences of active pioneers in the field.}, language = {en} } @phdthesis{Ziese2014, author = {Ziese, Ramona}, title = {Geometric electroelasticity}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72504}, school = {Universit{\"a}t Potsdam}, pages = {vi, 113}, year = {2014}, abstract = {In this work a diffential geometric formulation of the theory of electroelasticity is developed which also includes thermal and magnetic influences. We study the motion of bodies consisting of an elastic material that are deformed by the influence of mechanical forces, heat and an external electromagnetic field. To this end physical balance laws (conservation of mass, balance of momentum, angular momentum and energy) are established. These provide an equation that describes the motion of the body during the deformation. Here the body and the surrounding space are modeled as Riemannian manifolds, and we allow that the body has a lower dimension than the surrounding space. In this way one is not (as usual) restricted to the description of the deformation of three-dimensional bodies in a three-dimensional space, but one can also describe the deformation of membranes and the deformation in a curved space. Moreover, we formulate so-called constitutive relations that encode the properties of the used material. Balance of energy as a scalar law can easily be formulated on a Riemannian manifold. The remaining balance laws are then obtained by demanding that balance of energy is invariant under the action of arbitrary diffeomorphisms on the surrounding space. This generalizes a result by Marsden and Hughes that pertains to bodies that have the same dimension as the surrounding space and does not allow the presence of electromagnetic fields. Usually, in works on electroelasticity the entropy inequality is used to decide which otherwise allowed deformations are physically admissible and which are not. It is alsoemployed to derive restrictions to the possible forms of constitutive relations describing the material. Unfortunately, the opinions on the physically correct statement of the entropy inequality diverge when electromagnetic fields are present. Moreover, it is unclear how to formulate the entropy inequality in the case of a membrane that is subjected to an electromagnetic field. Thus, we show that one can replace the use of the entropy inequality by the demand that for a given process balance of energy is invariant under the action of arbitrary diffeomorphisms on the surrounding space and under linear rescalings of the temperature. On the one hand, this demand also yields the desired restrictions to the form of the constitutive relations. On the other hand, it needs much weaker assumptions than the arguments in physics literature that are employing the entropy inequality. Again, our result generalizes a theorem of Marsden and Hughes. This time, our result is, like theirs, only valid for bodies that have the same dimension as the surrounding space.}, language = {en} } @phdthesis{Ziemann2022, author = {Ziemann, Niklas}, title = {Four essays on the role of distance for economic decision-making}, doi = {10.25932/publishup-59107}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-591073}, school = {Universit{\"a}t Potsdam}, pages = {xii, 128}, year = {2022}, abstract = {Distances affect economic decision-making in numerous situations. The time at which we make a decision about future consumption has an impact on our consumption behavior. The spatial distance to employer, school or university impacts the place where we live and vice versa. The emotional closeness to other individuals influences our willingness to give money to them. This cumulative thesis aims to enrich the literature on the role of distance for economic decision-making. Thereby, each of my research projects sheds light on the impact of one kind of distance for efficient decision-making.}, language = {en} } @techreport{Ziemann2022, type = {Working Paper}, author = {Ziemann, Niklas}, title = {You will receive your money next week!}, series = {CEPA Discussion Papers}, journal = {CEPA Discussion Papers}, number = {56}, address = {Potsdam}, issn = {2628-653X}, doi = {10.25932/publishup-56398}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-563983}, pages = {24}, year = {2022}, abstract = {Against the background of the increasingly discussed "Linguistic Saving Hypothesis" (Chen, 2013), I studied whether the targeted use of a present tense (close tense) and a future tense (distant tense) within the same language have an impact on intertemporal decision-making. In a monetarily incentivized laboratory experiment in Germany, I implemented two different treatments on intertemporal choices. The treatments differed in the tense in which I referred to future rewards. My results show that individuals prefer to a greater extent rewards which are associated with a present tense (close tense). This result is in line with my prediction and the first empirical support for the Linguistic Saving Hypothesis within one language. However, this result holds exclusively for males. Females seem to be unaffected by the linguistic manipulation. I discuss my findings in the context of "gender-as-culture" as well as their potential policy-implications.}, language = {en} } @phdthesis{Ziehe2005, author = {Ziehe, Andreas}, title = {Blind source separation based on joint diagonalization of matrices with applications in biomedical signal processing}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-5694}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {This thesis is concerned with the solution of the blind source separation problem (BSS). The BSS problem occurs frequently in various scientific and technical applications. In essence, it consists in separating meaningful underlying components out of a mixture of a multitude of superimposed signals. In the recent research literature there are two related approaches to the BSS problem: The first is known as Independent Component Analysis (ICA), where the goal is to transform the data such that the components become as independent as possible. The second is based on the notion of diagonality of certain characteristic matrices derived from the data. Here the goal is to transform the matrices such that they become as diagonal as possible. In this thesis we study the latter method of approximate joint diagonalization (AJD) to achieve a solution of the BSS problem. After an introduction to the general setting, the thesis provides an overview on particular choices for the set of target matrices that can be used for BSS by joint diagonalization. As the main contribution of the thesis, new algorithms for approximate joint diagonalization of several matrices with non-orthogonal transformations are developed. These newly developed algorithms will be tested on synthetic benchmark datasets and compared to other previous diagonalization algorithms. Applications of the BSS methods to biomedical signal processing are discussed and exemplified with real-life data sets of multi-channel biomagnetic recordings.}, subject = {Signaltrennung}, language = {en} } @misc{ZieglerHeidbachReineckeretal.2016, author = {Ziegler, Moritz O. and Heidbach, Oliver and Reinecker, John and Przybycin, Anna M. and Scheck-Wenderoth, Magdalena}, title = {A multi-stage 3-D stress field modelling approach exemplified in the Bavarian Molasse Basin}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {556}, issn = {1866-8372}, doi = {10.25932/publishup-40980}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409806}, pages = {18}, year = {2016}, abstract = {The knowledge of the contemporary in situ stress state is a key issue for safe and sustainable subsurface engineering. However, information on the orientation and magnitudes of the stress state is limited and often not available for the areas of interest. Therefore 3-D geomechanical-numerical modelling is used to estimate the in situ stress state and the distance of faults from failure for application in subsurface engineering. The main challenge in this approach is to bridge the gap in scale between the widely scattered data used for calibration of the model and the high resolution in the target area required for the application. We present a multi-stage 3-D geomechanical-numerical approach which provides a state-of-the-art model of the stress field for a reservoir-scale area from widely scattered data records. Therefore, we first use a large-scale regional model which is calibrated by available stress data and provides the full 3-D stress tensor at discrete points in the entire model volume. The modelled stress state is used subsequently for the calibration of a smaller-scale model located within the large-scale model in an area without any observed stress data records. We exemplify this approach with two-stages for the area around Munich in the German Molasse Basin. As an example of application, we estimate the scalar values for slip tendency and fracture potential from the model results as measures for the criticality of fault reactivation in the reservoir-scale model. The modelling results show that variations due to uncertainties in the input data are mainly introduced by the uncertain material properties and missing S-Hmax magnitude estimates needed for a more reliable model calibration. This leads to the conclusion that at this stage the model's reliability depends only on the amount and quality of available stress information rather than on the modelling technique itself or on local details of the model geometry. Any improvements in modelling and increases in model reliability can only be achieved using more high-quality data for calibration.}, language = {en} } @phdthesis{Ziegler2017, author = {Ziegler, Moritz O.}, title = {The 3D in-situ stress field and its changes in geothermal reservoirs}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403838}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 110, XV}, year = {2017}, abstract = {Information on the contemporary in-situ stress state of the earth's crust is essential for geotechnical applications and physics-based seismic hazard assessment. Yet, stress data records for a data point are incomplete and their availability is usually not dense enough to allow conclusive statements. This demands a thorough examination of the in-situ stress field which is achieved by 3D geomechanicalnumerical models. However, the models spatial resolution is limited and the resulting local stress state is subject to large uncertainties that confine the significance of the findings. In addition, temporal variations of the in-situ stress field are naturally or anthropogenically induced. In my thesis I address these challenges in three manuscripts that investigate (1) the current crustal stress field orientation, (2) the 3D geomechanical-numerical modelling of the in-situ stress state, and (3) the phenomenon of injection induced temporal stress tensor rotations. In the first manuscript I present the first comprehensive stress data compilation of Iceland with 495 data records. Therefore, I analysed image logs from 57 boreholes in Iceland for indicators of the orientation of the maximum horizontal stress component. The study is the first stress survey from different kinds of stress indicators in a geologically very young and tectonically active area of an onshore spreading ridge. It reveals a distinct stress field with a depth independent stress orientation even very close to the spreading centre. In the second manuscript I present a calibrated 3D geomechanical-numerical modelling approach of the in-situ stress state of the Bavarian Molasse Basin that investigates the regional (70x70x10km³) and local (10x10x10km³) stress state. To link these two models I develop a multi-stage modelling approach that provides a reliable and efficient method to derive from the larger scale model initial and boundary conditions for the smaller scale model. Furthermore, I quantify the uncertainties in the models results which are inherent to geomechanical-numerical modelling in general and the multi-stage approach in particular. I show that the significance of the models results is mainly reduced due to the uncertainties in the material properties and the low number of available stress magnitude data records for calibration. In the third manuscript I investigate the phenomenon of injection induced temporal stress tensor rotation and its controlling factors. I conduct a sensitivity study with a 3D generic thermo-hydro-mechanical model. I show that the key control factors for the stress tensor rotation are the permeability as the decisive factor, the injection rate, and the initial differential stress. In particular for enhanced geothermal systems with a low permeability large rotations of the stress tensor are indicated. According to these findings the estimation of the initial differential stress in a reservoir is possible provided the permeability is known and the angle of stress rotation is observed. I propose that the stress tensor rotations can be a key factor in terms of the potential for induced seismicity on pre-existing faults due to the reorientation of the stress field that changes the optimal orientation of faults.}, language = {en} } @misc{ZieglerPfitznerSchulzetal.2022, author = {Ziegler, Joceline and Pfitzner, Bjarne and Schulz, Heinrich and Saalbach, Axel and Arnrich, Bert}, title = {Defending against Reconstruction Attacks through Differentially Private Federated Learning for Classification of Heterogeneous Chest X-ray Data}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, number = {14}, doi = {10.25932/publishup-58132}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-581322}, pages = {25}, year = {2022}, abstract = {Privacy regulations and the physical distribution of heterogeneous data are often primary concerns for the development of deep learning models in a medical context. This paper evaluates the feasibility of differentially private federated learning for chest X-ray classification as a defense against data privacy attacks. To the best of our knowledge, we are the first to directly compare the impact of differentially private training on two different neural network architectures, DenseNet121 and ResNet50. Extending the federated learning environments previously analyzed in terms of privacy, we simulated a heterogeneous and imbalanced federated setting by distributing images from the public CheXpert and Mendeley chest X-ray datasets unevenly among 36 clients. Both non-private baseline models achieved an area under the receiver operating characteristic curve (AUC) of 0.940.94 on the binary classification task of detecting the presence of a medical finding. We demonstrate that both model architectures are vulnerable to privacy violation by applying image reconstruction attacks to local model updates from individual clients. The attack was particularly successful during later training stages. To mitigate the risk of a privacy breach, we integrated R{\´e}nyi differential privacy with a Gaussian noise mechanism into local model training. We evaluate model performance and attack vulnerability for privacy budgets ε∈{1,3,6,10}�∈{1,3,6,10}. The DenseNet121 achieved the best utility-privacy trade-off with an AUC of 0.940.94 for ε=6�=6. Model performance deteriorated slightly for individual clients compared to the non-private baseline. The ResNet50 only reached an AUC of 0.760.76 in the same privacy setting. Its performance was inferior to that of the DenseNet121 for all considered privacy constraints, suggesting that the DenseNet121 architecture is more robust to differentially private training.}, language = {en} } @phdthesis{Zieger2017, author = {Zieger, Tobias}, title = {Self-adaptive data quality}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410573}, school = {Universit{\"a}t Potsdam}, pages = {vii, 125}, year = {2017}, abstract = {Carrying out business processes successfully is closely linked to the quality of the data inventory in an organization. Lacks in data quality lead to problems: Incorrect address data prevents (timely) shipments to customers. Erroneous orders lead to returns and thus to unnecessary effort. Wrong pricing forces companies to miss out on revenues or to impair customer satisfaction. If orders or customer records cannot be retrieved, complaint management takes longer. Due to erroneous inventories, too few or too much supplies might be reordered. A special problem with data quality and the reason for many of the issues mentioned above are duplicates in databases. Duplicates are different representations of same real-world objects in a dataset. However, these representations differ from each other and are for that reason hard to match by a computer. Moreover, the number of required comparisons to find those duplicates grows with the square of the dataset size. To cleanse the data, these duplicates must be detected and removed. Duplicate detection is a very laborious process. To achieve satisfactory results, appropriate software must be created and configured (similarity measures, partitioning keys, thresholds, etc.). Both requires much manual effort and experience. This thesis addresses automation of parameter selection for duplicate detection and presents several novel approaches that eliminate the need for human experience in parts of the duplicate detection process. A pre-processing step is introduced that analyzes the datasets in question and classifies their attributes semantically. Not only do these annotations help understanding the respective datasets, but they also facilitate subsequent steps, for example, by selecting appropriate similarity measures or normalizing the data upfront. This approach works without schema information. Following that, we show a partitioning technique that strongly reduces the number of pair comparisons for the duplicate detection process. The approach automatically finds particularly suitable partitioning keys that simultaneously allow for effective and efficient duplicate retrieval. By means of a user study, we demonstrate that this technique finds partitioning keys that outperform expert suggestions and additionally does not need manual configuration. Furthermore, this approach can be applied independently of the attribute types. To measure the success of a duplicate detection process and to execute the described partitioning approach, a gold standard is required that provides information about the actual duplicates in a training dataset. This thesis presents a technique that uses existing duplicate detection results and crowdsourcing to create a near gold standard that can be used for the purposes above. Another part of the thesis describes and evaluates strategies how to reduce these crowdsourcing costs and to achieve a consensus with less effort.}, language = {en} } @phdthesis{Ziege2022, author = {Ziege, Ricardo}, title = {Growth dynamics and mechanical properties of E. coli biofilms}, doi = {10.25932/publishup-55986}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-559869}, school = {Universit{\"a}t Potsdam}, pages = {xi, 123}, year = {2022}, abstract = {Biofilms are complex living materials that form as bacteria get embedded in a matrix of self-produced protein and polysaccharide fibres. The formation of a network of extracellular biopolymer fibres contributes to the cohesion of the biofilm by promoting cell-cell attachment and by mediating biofilm-substrate interactions. This sessile mode of bacteria growth has been well studied by microbiologists to prevent the detrimental effects of biofilms in medical and industrial settings. Indeed, biofilms are associated with increased antibiotic resistance in bacterial infections, and they can also cause clogging of pipelines or promote bio-corrosion. However, biofilms also gained interest from biophysics due to their ability to form complex morphological patterns during growth. Recently, the emerging field of engineered living materials investigates biofilm mechanical properties at multiple length scales and leverages the tools of synthetic biology to tune the functions of their constitutive biopolymers. This doctoral thesis aims at clarifying how the morphogenesis of Escherichia coli (E. coli) biofilms is influenced by their growth dynamics and mechanical properties. To address this question, I used methods from cell mechanics and materials science. I first studied how biological activity in biofilms gives rise to non-uniform growth patterns. In a second study, I investigated how E. coli biofilm morphogenesis and its mechanical properties adapt to an environmental stimulus, namely the water content of their substrate. Finally, I estimated how the mechanical properties of E. coli biofilms are altered when the bacteria express different extracellular biopolymers. On nutritive hydrogels, micron-sized E. coli cells can build centimetre-large biofilms. During this process, bacterial proliferation and matrix production introduce mechanical stresses in the biofilm, which release through the formation of macroscopic wrinkles and delaminated buckles. To relate these biological and mechanical phenomena, I used time-lapse fluorescence imaging to track cell and matrix surface densities through the early and late stages of E. coli biofilm growth. Colocalization of high cell and matrix densities at the periphery precede the onset of mechanical instabilities at this annular region. Early growth is detected at this outer annulus, which was analysed by adding fluorescent microspheres to the bacterial inoculum. But only when high rates of matrix production are present in the biofilm centre, does overall biofilm spreading initiate along the solid-air interface. By tracking larger fluorescent particles for a long time, I could distinguish several kinematic stages of E. coli biofilm expansion and observed a transition from non-linear to linear velocity profiles, which precedes the emergence of wrinkles at the biofilm periphery. Decomposing particle velocities to their radial and circumferential components revealed a last kinematic stage, where biofilm movement is mostly directed towards the radial delaminated buckles, which verticalize. The resulting compressive strains computed in these regions were observed to substantially deform the underlying agar substrates. The co-localization of higher cell and matrix densities towards an annular region and the succession of several kinematic stages are thus expected to promote the emergence of mechanical instabilities at the biofilm periphery. These experimental findings are predicted to advance future modelling approaches of biofilm morphogenesis. E. coli biofilm morphogenesis is further anticipated to depend on external stimuli from the environment. To clarify how the water could be used to tune biofilm material properties, we quantified E. coli biofilm growth, wrinkling dynamics and rigidity as a function of the water content of the nutritive substrates. Time-lapse microscopy and computational image analysis revealed that substrates with high water content promote biofilm spreading kinetics, while substrates with low water content promote biofilm wrinkling. The wrinkles observed on biofilm cross-sections appeared more bent on substrates with high water content, while they tended to be more vertical on substrates with low water content. Both wet and dry biomass, accumulated over 4 days of culture, were larger in biofilms cultured on substrates with high water content, despite extra porosity within the matrix layer. Finally, the micro-indentation analysis revealed that substrates with low water content supported the formation of stiffer biofilms. This study shows that E. coli biofilms respond to the water content of their substrate, which might be used for tuning their material properties in view of further applications. Biofilm material properties further depend on the composition and structure of the matrix of extracellular proteins and polysaccharides. In particular, E. coli biofilms were suggested to present tissue-like elasticity due to a dense fibre network consisting of amyloid curli and phosphoethanolamine-modified cellulose. To understand the contribution of these components to the emergent mechanical properties of E. coli biofilms, we performed micro-indentation on biofilms grown from bacteria of several strains. Besides showing higher dry masses, larger spreading diameters and slightly reduced water contents, biofilms expressing both main matrix components also presented high rigidities in the range of several hundred kPa, similar to biofilms containing only curli fibres. In contrast, a lack of amyloid curli fibres provides much higher adhesive energies and more viscoelastic fluid-like material behaviour. Therefore, the combination of amyloid curli and phosphoethanolamine-modified cellulose fibres implies the formation of a composite material whereby the amyloid curli fibres provide rigidity to E. coli biofilms, whereas the phosphoethanolamine-modified cellulose rather acts as a glue. These findings motivate further studies involving purified versions of these protein and polysaccharide components to better understand how their interactions benefit biofilm functions. All three studies depict different aspects of biofilm morphogenesis, which are interrelated. The first work reveals the correlation between non-uniform biological activities and the emergence of mechanical instabilities in the biofilm. The second work acknowledges the adaptive nature of E. coli biofilm morphogenesis and its mechanical properties to an environmental stimulus, namely water. Finally, the last study reveals the complementary role of the individual matrix components in the formation of a stable biofilm material, which not only forms complex morphologies but also functions as a protective shield for the bacteria it contains. Our experimental findings on E. coli biofilm morphogenesis and their mechanical properties can have further implications for fundamental and applied biofilm research fields.}, language = {en} } @misc{ZiegeTheodorouJuenglingetal.2020, author = {Ziege, Madlen and Theodorou, Panagiotis and J{\"u}ngling, Hannah and Merker, Stefan and Plath, Martin and Streit, Bruno and Lerp, Hannes}, title = {Population genetics of the European rabbit along a rural-to-urban gradient}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {880}, issn = {1866-8372}, doi = {10.25932/publishup-46035}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-460354}, pages = {14}, year = {2020}, abstract = {The European rabbit (Oryctolagus cuniculus) is declining in large parts of Europe but populations in some German cities remained so far unaffected by this decline. The question arises of how urbanization affects patterns of population genetic variation and differentiation in German rabbit populations, as urban habitat fragmentation may result in altered meta-population dynamics. To address this question, we used microsatellite markers to genotype rabbit populations occurring along a rural-to-urban gradient in and around the city of Frankfurt, Germany. We found no effect of urbanization on allelic richness. However, the observed heterozygosity was significantly higher in urban than rural populations and also the inbreeding coefficients were lower, most likely reflecting the small population sizes and possibly on-going loss of genetic diversity in structurally impoverished rural areas. Global FST and G'ST-values suggest moderate but significant differentiation between populations. Multiple matrix regression with randomization ascribed this differentiation to isolation-by-environment rather than isolation-by-distance. Analyses of migration rates revealed asymmetrical gene flow, which was higher from rural into urban populations than vice versa and may again reflect intensified agricultural land-use practices in rural areas. We discuss that populations inhabiting urban areas will likely play an important role in the future distribution of European rabbits.}, language = {en} } @misc{ZiegeMahlowHennigeSulzetal.2009, author = {Ziege, Madlen and Mahlow, Kristin and Hennige-Sulz, Carmen and Kronmarck, Claudia and Tiedemann, Ralph and Streit, Bruno and Plath, Martin}, title = {Audience effects in the Atlantic molly (Poecilia mexicana) : prudent male mate choice in response to perceived sperm competition risk?}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-45171}, year = {2009}, abstract = {Background: Multidirectional interactions in social networks can have a profound effect on mate choice behavior; e.g., Poecilia mexicana males show weaker expression of mating preferences when being observed by a rival. This may be an adaptation to reduce sperm competition risk, which arises because commonly preferred female phenotypes will receive attention also from surrounding males, and/or because other males can copy the focal male's mate choice. Do P. mexicana males indeed respond to perceived sperm competition risk? We gave males a choice between two females and repeated the tests under one of the following conditions: (1) an empty transparent cylinder was presented (control); (2) another ("audience") male inside the cylinder observed the focal male throughout the 2nd part, or (3) the audience male was presented only before the tests, but could not eavesdrop during the actual choice tests (non-specific sperm competition risk treatments); (4) the focal male could see a rival male interact sexually with the previously preferred, or (5) with the non-preferred female before the 2nd part of the tests (specific sperm competition risk treatments). Results: The strength of individual male preferences declined slightly also during the control treatment (1). However, this decrease was more than two-fold stronger in audience treatment (2), i.e., with non-specific sperm competition risk including the possibility for visual eavesdropping by the audience male. No audience effect was found in treatments (3) and (5), but a weak effect was also observed when the focal male had seen the previously preferred female sexually interact with a rival male (treatment 4; specific sperm competition risk). Conclusion: When comparing the two 'non-specific sperm competition risk' treatments, a very strong effect was found only when the audience male could actually observe the focal male during mate choice [treatment (2)]. This suggests that focal males indeed attempt to conceal their mating preferences so as to prevent surrounding males from copying their mate choice. When there is no potential for eavesdropping [treatment (3)], non-specific specific sperm competition risk seems to play a minor or no role. Our results also show that P. mexicana males tend to share their mating effort more equally among females when the resource value of their previously preferred mate decreases after mating with a rival male (perceived specific sperm competition risk), but this effect is comparatively weak.}, language = {en} } @phdthesis{Zickfeld2003, author = {Zickfeld, Kirsten}, title = {Modeling large-scale singular climate events for integrated assessment}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001176}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Erkenntnisse aus pal{\"a}oklimatologischen Studien, theoretischen Betrachtungen und Modellsimulationen deuten darauf hin, dass anthropogene Emissionen von Treibhausgasen und Aerosolen zu großskaligen, singul{\"a}ren Klimaereignissen f{\"u}hren k{\"o}nnten. Diese bezeichnen stark nichtlineare, abrupte Klima{\"a}nderungen, mit regionalen bis hin zu globalen Auswirkungen. Ziel dieser Arbeit ist die Entwicklung von Modellen zweier maßgeblicher Komponenten des Klimasystems, die singul{\"a}res Verhalten aufweisen k{\"o}nnten: die atlantische thermohaline Zirkulation (THC) und der indische Monsun. Diese Modelle sind so konzipiert, dass sie den Anforderungen der "Integrated Assessment"-Modellierung gen{\"u}gen, d.h., sie sind realistisch, recheneffizient, transparent und flexibel. Das THC-Modell ist ein einfaches, interhemisph{\"a}risches Boxmodell, das anhand von Daten kalibriert wird, die mit einem gekoppelten Klimamodell mittlerer Komplexit{\"a}t erzeugt wurden. Das Modell wird durch die globale Mitteltemperatur angetrieben, die mit Hilfe eines linearen Downscaling-Verfahrens in regionale W{\"a}rme- und S{\"u}ßwasserfl{\"u}sse {\"u}bersetzt wird. Die Ergebnisse einer Vielzahl von zeitabh{\"a}ngigen Simulationen zeigen, dass das Modell in der Lage ist, maßgebliche Eigenschaften des Verhaltens komplexer Klimamodelle wiederzugeben, wie die Sensitivit{\"a}t bez{\"u}glich des Ausmaßes, der regionalen Verteilung und der Rate der Klima{\"a}nderung. Der indische Monsun wird anhand eines neuartigen eindimensionalen Boxmodells der tropischen Atmosph{\"a}re beschrieben. Dieses enth{\"a}lt Parmetrisierungen der Oberfl{\"a}chen- und Strahlungsfl{\"u}sse, des hydrologischen Kreislaufs und derHydrologie der Landoberfl{\"a}che. Trotz des hohen Idealisierungsgrades ist das Modell in der Lage, relevante Aspekte der beobachteten Monsundynamik, wie z.B. den Jahresgang des Niederschlags und das Eintritts- sowie R{\"u}ckzugsdatum des Sommermonsuns, zufrieden stellend zu simulieren. Außerdem erfasst das Modell die Sensitivit{\"a}tdes Monsuns bez{\"u}glich {\"A}nderungen der Treibhausgas- und Aerosolkonzentrationen, die aus komplexeren Modellen bekannt sind. Eine vereinfachte Version des Monsunmodells wird f{\"u}r die Untersuchung des qualitativen Systemverhaltens in Abh{\"a}ngigkeit von {\"A}nderungen der Randbedingungen eingesetzt. Das bemerkenswerteste Ergebnis ist das Auftreten einer Sattelknotenbifurkation des Sommermonsuns f{\"u}r kritische Werte der Albedo oder der Sonneneinstrahlung. Dar{\"u}ber hinaus weist das Modell zwei stabile Zust{\"a}nde auf: neben dem niederschlagsreichen Sommermonsun besteht ein Zustand, der sich durch einen schwachen hydrologischen Kreislauf auszeichnet. Das Beachtliche an diesen Ergebnissen ist, dass anthropogene St{\"o}rungen der plantetaren Albedo, wie Schwefelemissionen und/oder Landnutzungs{\"a}nderungen, zu einer Destabilisierung des indischen Monsuns f{\"u}hren k{\"o}nnten. Das THC-Boxmodell findet exemplarische Anwendung in einem "Integrated Assessment" von Klimaschutzstrategien. Basierend auf dem konzeptionellen und methodischen Ger{\"u}st des Leitplankenansatzes werden Emissionskorridore (d.h. zul{\"a}ssige Spannen an CO2-Emissionen) berechnet, die das Risiko eines THC-Zusammenbruchs begrenzen sowie sozio{\"o}konomische Randbedingungen ber{\"u}cksichtigen. Die Ergebnisse zeigen u.a. eine starke Abh{\"a}ngigkeit der Breite der Emissionskorridore von der Klima- und hydrologischen Sensitivit{\"a}t. F{\"u}r kleine Werte einer oder beider Sensitivit{\"a}ten liegt der obere Korridorrand bei weit h{\"o}heren Emissionswerten als jene, die von plausiblen Emissionsszenarien f{\"u}r das 21. Jahrhundert erreicht werden. F{\"u}r große Werte der Sensitivit{\"a}ten hingegen, verlassen schon niedrige Emissionsszenarien den Korridor in den fr{\"u}hen Jahrzehnten des 21. Jahrhunderts. Dies impliziert eine Abkehr von den gegenw{\"a}rtigen Emissionstrends innherhalb der kommenden Jahrzehnte, wenn das Risko eines THC Zusammenbruchs gering gehalten werden soll. Anhand einer Vielzahl von Anwendungen - von Sensitivit{\"a}ts- {\"u}ber Bifurkationsanalysen hin zu integrierter Modellierung - zeigt diese Arbeit den Wert reduzierter Modelle auf. Die Ergebnisse und die daraus zu ziehenden Schlussfolgerungen liefern einen wertvollen Beitrag zu der wissenschaftlichen und politischen Diskussion bez{\"u}glich der Folgen des anthropogenen Klimawandels und der langfristigen Klimaschutzziele.}, language = {en} } @misc{ZibulskiWesenerWilkesetal.2017, author = {Zibulski, Romy and Wesener, Felix and Wilkes, Heinz and Plessen, Birgit and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {C / N ratio, stable isotope (δ 13 C, δ 15 N), and n-alkane patterns of brown mosses along hydrological gradients of low-centred polygons of the Siberian Arctic}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {672}, issn = {1866-8372}, doi = {10.25932/publishup-41710}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-417104}, pages = {14}, year = {2017}, abstract = {Mosses are a major component of the arctic vegetation, particularly in wetlands. We present C / N atomic ratio, delta C-13 and delta N-15 data of 400 brown-moss samples belonging to 10 species that were collected along hydrological gradients within polygonal mires located on the southern Taymyr Peninsula and the Lena River delta in northern Siberia. Additionally, n-alkane patterns of six of these species (16 samples) were investigated. The aim of the study is to see whether the inter-and intraspecific differences in C / N, isotopic compositions and n-alkanes are indicative of habitat, particularly with respect to water level. Overall, we find high variability in all investigated parameters for two different moisture-related groups of moss species. The C / N ratios range between 11 and 53 (median: 32) and show large variations at the intraspecific level. However, species preferring a dry habitat (xero-mesophilic mosses) show higher C / N ratios than those preferring a wet habitat (meso-hygrophilic mosses). The delta C-13 values range between 37.0 and 22.5\% (median D 27.8 \%). The delta N-15 values range between 6.6 and C 1.7\%(median D 2.2 \%). We find differences in delta C-13 and delta N-15 compositions between both habitat types. For some species of the meso-hygrophilic group, we suggest that a relationship between the individ-ual habitat water level and isotopic composition can be inferred as a function of microbial symbiosis. The n-alkane distribution also shows differences primarily between xeromesophilic and meso-hygrophilic mosses, i. e. having a dominance of n-alkanes with long (n-C29, n-C31 /and intermediate (n-C25 /chain lengths, respectively. Overall, our results reveal that C / N ratios, isotopic signals and n-alkanes of studied brown-moss taxa from polygonal wetlands are characteristic of their habitat.}, language = {en} } @book{Zhuchok2018, author = {Zhuchok, Anatolii V.}, title = {Relatively free doppelsemigroups}, number = {5}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-427-2}, issn = {2199-4951}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407719}, publisher = {Universit{\"a}t Potsdam}, pages = {vii, 78}, year = {2018}, abstract = {A doppelalgebra is an algebra defined on a vector space with two binary linear associative operations. Doppelalgebras play a prominent role in algebraic K-theory. We consider doppelsemigroups, that is, sets with two binary associative operations satisfying the axioms of a doppelalgebra. Doppelsemigroups are a generalization of semigroups and they have relationships with such algebraic structures as interassociative semigroups, restrictive bisemigroups, dimonoids, and trioids. In the lecture notes numerous examples of doppelsemigroups and of strong doppelsemigroups are given. The independence of axioms of a strong doppelsemigroup is established. A free product in the variety of doppelsemigroups is presented. We also construct a free (strong) doppelsemigroup, a free commutative (strong) doppelsemigroup, a free n-nilpotent (strong) doppelsemigroup, a free n-dinilpotent (strong) doppelsemigroup, and a free left n-dinilpotent doppelsemigroup. Moreover, the least commutative congruence, the least n-nilpotent congruence, the least n-dinilpotent congruence on a free (strong) doppelsemigroup and the least left n-dinilpotent congruence on a free doppelsemigroup are characterized. The book addresses graduate students, post-graduate students, researchers in algebra and interested readers.}, language = {en} } @misc{ZhuSchluppTiedemann2016, author = {Zhu, Fangjun and Schlupp, Ingo and Tiedemann, Ralph}, title = {Sequence Evolution and Expression of the Androgen Receptor and Other Pathway-Related Genes in a Unisexual Fish, the Amazon Molly, Poecilia formosa, and Its Bisexual Ancestors}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-97119}, pages = {19}, year = {2016}, abstract = {The all-female Amazon molly (Poecilia formosa) originated from a single hybridization of two bisexual ancestors, Atlantic molly (Poecilia mexicana) and sailfin molly (Poecilia latipinna). As a gynogenetic species, the Amazon molly needs to copulate with a heterospecific male, but the genetic information of the sperm-donor does not contribute to the next generation, as the sperm only acts as the trigger for the diploid eggs' embryogenesis. Here, we study the sequence evolution and gene expression of the duplicated genes coding for androgen receptors (ars) and other pathway-related genes, i.e., the estrogen receptors (ers) and cytochrome P450, family19, subfamily A, aromatase genes (cyp19as), in the Amazon molly, in comparison to its bisexual ancestors. Mollies possess-as most other teleost fish—two copies of the ar, er, and cyp19a genes, i.e., arα/arβ, erα/erβ1, and cyp19a1 (also referred as cyp19a1a)/cyp19a2 (also referred to as cyp19a1b), respectively. Non-synonymous single nucleotide polymorphisms (SNPs) among the ancestral bisexual species were generally predicted not to alter protein function. Some derived substitutions in the P. mexicana and one in P. formosa are predicted to impact protein function. We also describe the gene expression pattern of the ars and pathway-related genes in various tissues (i.e., brain, gill, and ovary) and provide SNP markers for allele specific expression research. As a general tendency, the levels of gene expression were lowest in gill and highest in ovarian tissues, while expression levels in the brain were intermediate in most cases. Expression levels in P. formosa were conserved where expression did not differ between the two bisexual ancestors. In those cases where gene expression levels significantly differed between the bisexual species, P. formosa expression was always comparable to the higher expression level among the two ancestors. Interestingly, erβ1 was expressed neither in brain nor in gill in the analyzed three molly species, which implies a more important role of erα in the estradiol synthesis pathway in these tissues. Furthermore, our data suggest that interactions of steroid-signaling pathway genes differ across tissues, in particular the interactions of ars and cyp19as.}, language = {en} } @misc{ZhuSchluppTiedemann2017, author = {Zhu, Fangjun and Schlupp, Ingo and Tiedemann, Ralph}, title = {Allele-specific expression at the androgen receptor alpha gene in a hybrid unisexual fish, the Amazon molly (Poecilia formosa)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403875}, pages = {14}, year = {2017}, abstract = {The all-female Amazon molly (Poecilia formosa) is the result of a hybridization of the Atlantic molly (P. mexicana) and the sailfin molly (P. latipinna) approximately 120,000 years ago. As a gynogenetic species, P. formosa needs to copulate with heterospecific males including males from one of its bisexual ancestral species. However, the sperm only triggers embryogenesis of the diploid eggs. The genetic information of the sperm donor typically will not contribute to the next generation of P. formosa. Hence, P. formosa possesses generally one allele from each of its ancestral species at any genetic locus. This raises the question whether both ancestral alleles are equally expressed in P. formosa. Allele-specific expression (ASE) has been previously assessed in various organisms, e.g., human and fish, and ASE was found to be important in the context of phenotypic variability and disease. In this study, we utilized Real-Time PCR techniques to estimate ASE of the androgen receptor alpha (arα) gene in several distinct tissues of Amazon mollies. We found an allelic bias favoring the maternal ancestor (P. mexicana) allele in ovarian tissue. This allelic bias was not observed in the gill or the brain tissue. Sequencing of the promoter regions of both alleles revealed an association between an Indel in a known CpG island and differential expression. Future studies may reveal whether our observed cis-regulatory divergence is caused by an ovary-specific trans-regulatory element, preferentially activating the allele of the maternal ancestor.}, language = {en} } @phdthesis{Zhou2024, author = {Zhou, Xiangqian}, title = {Modeling of spatially distributed nitrate transport to investigate the effects of drought and river restoration in the Bode catchment, Central Germany}, doi = {10.25932/publishup-62105}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-621059}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 168}, year = {2024}, abstract = {The European Water Framework Directive (WFD) has identified river morphological alteration and diffuse pollution as the two main pressures affecting water bodies in Europe at the catchment scale. Consequently, river restoration has become a priority to achieve the WFD's objective of good ecological status. However, little is known about the effects of stream morphological changes, such as re-meandering, on in-stream nitrate retention at the river network scale. Therefore, catchment nitrate modeling is necessary to guide the implementation of spatially targeted and cost-effective mitigation measures. Meanwhile, Germany, like many other regions in central Europe, has experienced consecutive summer droughts from 2015-2018, resulting in significant changes in river nitrate concentrations in various catchments. However, the mechanistic exploration of catchment nitrate responses to changing weather conditions is still lacking. Firstly, a fully distributed, process-based catchment Nitrate model (mHM-Nitrate) was used, which was properly calibrated and comprehensively evaluated at numerous spatially distributed nitrate sampling locations. Three calibration schemes were designed, taking into account land use, stream order, and mean nitrate concentrations, and they varied in spatial coverage but used data from the same period (2011-2019). The model performance for discharge was similar among the three schemes, with Nash-Sutcliffe Efficiency (NSE) scores ranging from 0.88 to 0.92. However, for nitrate concentrations, scheme 2 outperformed schemes 1 and 3 when compared to observed data from eight gauging stations. This was likely because scheme 2 incorporated a diverse range of data, including low discharge values and nitrate concentrations, and thus provided a better representation of within-catchment heterogenous. Therefore, the study suggests that strategically selecting gauging stations that reflect the full range of within-catchment heterogeneity is more important for calibration than simply increasing the number of stations. Secondly, the mHM-Nitrate model was used to reveal the causal relations between sequential droughts and nitrate concentration in the Bode catchment (3200 km2) in central Germany, where stream nitrate concentrations exhibited contrasting trends from upstream to downstream reaches. The model was evaluated using data from six gauging stations, reflecting different levels of runoff components and their associated nitrate-mixing from upstream to downstream. Results indicated that the mHM-Nitrate model reproduced dynamics of daily discharge and nitrate concentration well, with Nash-Sutcliffe Efficiency ≥ 0.73 for discharge and Kling-Gupta Efficiency ≥ 0.50 for nitrate concentration at most stations. Particularly, the spatially contrasting trends of nitrate concentration were successfully captured by the model. The decrease of nitrate concentration in the lowland area in drought years (2015-2018) was presumably due to (1) limited terrestrial export loading (ca. 40\% lower than that of normal years 2004-2014), and (2) increased in-stream retention efficiency (20\% higher in summer within the whole river network). From a mechanistic modelling perspective, this study provided insights into spatially heterogeneous flow and nitrate dynamics and effects of sequential droughts, which shed light on water-quality responses to future climate change, as droughts are projected to be more frequent. Thirdly, this study investigated the effects of stream restoration via re-meandering on in-stream nitrate retention at network-scale in the well-monitored Bode catchment. The mHM-Nitrate model showed good performance in reproducing daily discharge and nitrate concentrations, with median Kling-Gupta values of 0.78 and 0.74, respectively. The mean and standard deviation of gross nitrate retention efficiency, which accounted for both denitrification and assimilatory uptake, were 5.1 ± 0.61\% and 74.7 ± 23.2\% in winter and summer, respectively, within the stream network. The study found that in the summer, denitrification rates were about two times higher in lowland sub-catchments dominated by agricultural lands than in mountainous sub-catchments dominated by forested areas, with median ± SD of 204 ± 22.6 and 102 ± 22.1 mg N m-2 d-1, respectively. Similarly, assimilatory uptake rates were approximately five times higher in streams surrounded by lowland agricultural areas than in those in higher-elevation, forested areas, with median ± SD of 200 ± 27.1 and 39.1 ± 8.7 mg N m-2 d-1, respectively. Therefore, restoration strategies targeting lowland agricultural areas may have greater potential for increasing nitrate retention. The study also found that restoring stream sinuosity could increase net nitrate retention efficiency by up to 25.4 ± 5.3\%, with greater effects seen in small streams. These results suggest that restoration efforts should consider augmenting stream sinuosity to increase nitrate retention and decrease nitrate concentrations at the catchment scale.}, language = {en} } @misc{ZhouFischerTuncaetal.2020, author = {Zhou, Lin and Fischer, Eric and Tunca, Can and Brahms, Clemens Markus and Ersoy, Cem and Granacher, Urs and Arnrich, Bert}, title = {How We Found Our IMU}, series = {Postprints der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, journal = {Postprints der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, number = {2}, doi = {10.25932/publishup-48162}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-481628}, pages = {31}, year = {2020}, abstract = {Inertial measurement units (IMUs) are commonly used for localization or movement tracking in pervasive healthcare-related studies, and gait analysis is one of the most often studied topics using IMUs. The increasing variety of commercially available IMU devices offers convenience by combining the sensor modalities and simplifies the data collection procedures. However, selecting the most suitable IMU device for a certain use case is increasingly challenging. In this study, guidelines for IMU selection are proposed. In particular, seven IMUs were compared in terms of their specifications, data collection procedures, and raw data quality. Data collected from the IMUs were then analyzed by a gait analysis algorithm. The difference in accuracy of the calculated gait parameters between the IMUs could be used to retrace the issues in raw data, such as acceleration range or sensor calibration. Based on our algorithm, we were able to identify the best-suited IMUs for our needs. This study provides an overview of how to select the IMUs based on the area of study with concrete examples, and gives insights into the features of seven commercial IMUs using real data.}, language = {en} } @phdthesis{Zhou2017, author = {Zhou, Bin}, title = {On the assessment of surface urban heat island}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-404383}, school = {Universit{\"a}t Potsdam}, pages = {xiii, 119}, year = {2017}, abstract = {Inwiefern St{\"a}dte unter den Megatrends der Urbanisierung und des Klimawandels nachhaltig gestaltet werden k{\"o}nnen, bleibt umstritten. Dies ist zum Teil auf unzureichende Kenntnisse der Mensch-Umwelt-Interaktionen zur{\"u}ckzuf{\"u}hren. Als die am vollst{\"a}ndigsten dokumentierte anthropogene Klimamodifikation ruft der Urbane Hitzeinsel (UHI) Effekt weltweit Sorgen hinsichtlich der Gesundheit der Bev{\"o}lkerung hervor. Dazu kommt noch ein immer h{\"a}ufigeres und intensiveres Auftreten von Hitzewellen, wodurch das Wohlbefinden der Stadtbewohner weiter beeintr{\"a}chtigt wird. Trotz eines deutlichen Anstiegs der Zahl der UHI-bezogenen Ver{\"o}ffentlichungen in den letzten Jahrzehnten haben die unterschiedlichen Definitionen von st{\"a}dtischen und l{\"a}ndlichen Gebieten in bisherigen Studien die allgemeine Vergleichbarkeit der Resultate stark erschwert. Dar{\"u}ber hinaus haben nur wenige Studien den UHI-Effekt und seine Einflussfaktoren anhand einer Kombination der Landnutzungsdaten und der thermischen Fernerkundung systematisch untersucht. Diese Arbeit stellt einen allgemeinen Rahmen zur Quantifizierung von UHI-Intensit{\"a}ten mittels eines automatisierten Algorithmus vor, wobei St{\"a}dte als Agglomerationen maximal r{\"a}umlicher Kontinuit{\"a}t basierend auf Landnutzungsdaten identifiziert, sowie deren l{\"a}ndliche Umfelder analog definiert werden. Durch Verkn{\"u}pfung der Landnutzungsdaten mit Landoberfl{\"a}chentemperaturen von Satelliten kann die UHI-Intensit{\"a}t robust und konsistent berechnet werden. Anhand dieser Innovation wurde nicht nur der Zusammenhang zwischen Stadtgr{\"o}ße und UHI-Intensit{\"a}t erneut untersucht, sondern auch die Auswirkungen der Stadtform auf die UHI-Intensit{\"a}t quantifiziert. Diese Arbeit leistet vielf{\"a}ltige Beitr{\"a}ge zum tieferen Verst{\"a}ndnis des UHI-Ph{\"a}nomens. Erstens wurde eine log-lineare Beziehung zwischen UHI-Intensit{\"a}t und Stadtgr{\"o}ße unter Ber{\"u}cksichtigung der 5,000 europ{\"a}ischen St{\"a}dte best{\"a}tigt. Werden kleinere St{\"a}dte auch ber{\"u}cksichtigt, ergibt sich eine log-logistische Beziehung. Zweitens besteht ein komplexes Zusammenspiel zwischen der Stadtform und der UHI-Intensit{\"a}t: die Stadtgr{\"o}ße stellt den st{\"a}rksten Einfluss auf die UHI-Intensit{\"a}t dar, gefolgt von der fraktalen Dimension und der Anisometrie. Allerdings zeigen ihre relativen Beitr{\"a}ge zur UHI-Intensit{\"a}t eine regionale Heterogenit{\"a}t, welche die Bedeutung r{\"a}umlicher Muster w{\"a}hrend der Umsetzung von UHI-Anpassungsmaßnahmen hervorhebt. Des Weiteren ergibt sich eine neue Saisonalit{\"a}t der UHI-Intensit{\"a}t f{\"u}r individuelle St{\"a}dte in Form von Hysteresekurven, die eine Phasenverschiebung zwischen den Zeitreihen der UHI-Intensit{\"a}t und der Hintergrundtemperatur andeutet. Diese Saisonalit{\"a}t wurde anhand von Luft- und Landoberfl{\"a}chentemperaturen untersucht, indem die Satellitenbeobachtung und die Modellierung der urbanen Grenzschicht mittels des UrbClim-Modells kombiniert wurden. Am Beispiel von London ist die Diskrepanz der Saisonalit{\"a}ten zwischen den beiden Temperaturen vor allem auf die mit der einfallenden Sonnenstrahlung verbundene Besonderheit der Landoberfl{\"a}chentemperatur zur{\"u}ckzuf{\"u}hren. Dar{\"u}ber hinaus spielt das regionale Klima eine wichtige Rolle bei der Entwicklung der UHI. Diese Arbeit ist eine der ersten Studien dieser Art, die eine systematische und statistische Untersuchung des UHI-Effektes erm{\"o}glicht. Die Ergebnisse sind von besonderer Bedeutung f{\"u}r die allgemeine r{\"a}umliche Planung und Regulierung auf Meso- und Makroebenen, damit sich Vorteile der rapiden Urbanisierung nutzbar machen und zeitgleich die folgende Hitzebelastung proaktiv vermindern lassen.}, language = {en} } @misc{ZhongCausaMooreetal.2020, author = {Zhong, Yufei and Causa, Martina and Moore, Gareth John and Krauspe, Philipp and Xiao, Bo and G{\"u}nther, Florian and Kublitski, Jonas and BarOr, Eyal and Zhou, Erjun and Banerji, Natalie}, title = {Sub-picosecond charge-transfer at near-zero driving force in polymer:non-fullerene acceptor blends and bilayers}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1}, issn = {1866-8372}, doi = {10.25932/publishup-51193}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-511936}, pages = {12}, year = {2020}, abstract = {Organic photovoltaics based on non-fullerene acceptors (NFAs) show record efficiency of 16 to 17\% and increased photovoltage owing to the low driving force for interfacial charge-transfer. However, the low driving force potentially slows down charge generation, leading to a tradeoff between voltage and current. Here, we disentangle the intrinsic charge-transfer rates from morphology-dependent exciton diffusion for a series of polymer:NFA systems. Moreover, we establish the influence of the interfacial energetics on the electron and hole transfer rates separately. We demonstrate that charge-transfer timescales remain at a few hundred femtoseconds even at near-zero driving force, which is consistent with the rates predicted by Marcus theory in the normal region, at moderate electronic coupling and at low re-organization energy. Thus, in the design of highly efficient devices, the energy offset at the donor:acceptor interface can be minimized without jeopardizing the charge-transfer rate and without concerns about a current-voltage tradeoff.}, language = {en} } @phdthesis{Zheng2021, author = {Zheng, Chunming}, title = {Bursting and synchronization in noisy oscillatory systems}, doi = {10.25932/publishup-50019}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500199}, school = {Universit{\"a}t Potsdam}, pages = {iv, 87}, year = {2021}, abstract = {Noise is ubiquitous in nature and usually results in rich dynamics in stochastic systems such as oscillatory systems, which exist in such various fields as physics, biology and complex networks. The correlation and synchronization of two or many oscillators are widely studied topics in recent years. In this thesis, we mainly investigate two problems, i.e., the stochastic bursting phenomenon in noisy excitable systems and synchronization in a three-dimensional Kuramoto model with noise. Stochastic bursting here refers to a sequence of coherent spike train, where each spike has random number of followers due to the combined effects of both time delay and noise. Synchronization, as a universal phenomenon in nonlinear dynamical systems, is well illustrated in the Kuramoto model, a prominent model in the description of collective motion. In the first part of this thesis, an idealized point process, valid if the characteristic timescales in the problem are well separated, is used to describe statistical properties such as the power spectral density and the interspike interval distribution. We show how the main parameters of the point process, the spontaneous excitation rate, and the probability to induce a spike during the delay action can be calculated from the solutions of a stationary and a forced Fokker-Planck equation. We extend it to the delay-coupled case and derive analytically the statistics of the spikes in each neuron, the pairwise correlations between any two neurons, and the spectrum of the total output from the network. In the second part, we investigate the three-dimensional noisy Kuramoto model, which can be used to describe the synchronization in a swarming model with helical trajectory. In the case without natural frequency, the Kuramoto model can be connected with the Vicsek model, which is widely studied in collective motion and swarming of active matter. We analyze the linear stability of the incoherent state and derive the critical coupling strength above which the incoherent state loses stability. In the limit of no natural frequency, an exact self-consistent equation of the mean field is derived and extended straightforward to any high-dimensional case.}, language = {en} } @phdthesis{Zhelavskaya2020, author = {Zhelavskaya, Irina}, title = {Modeling of the Plasmasphere Dynamics}, doi = {10.25932/publishup-48243}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-482433}, school = {Universit{\"a}t Potsdam}, pages = {xlii, 256}, year = {2020}, abstract = {The plasmasphere is a dynamic region of cold, dense plasma surrounding the Earth. Its shape and size are highly susceptible to variations in solar and geomagnetic conditions. Having an accurate model of plasma density in the plasmasphere is important for GNSS navigation and for predicting hazardous effects of radiation in space on spacecraft. The distribution of cold plasma and its dynamic dependence on solar wind and geomagnetic conditions remain, however, poorly quantified. Existing empirical models of plasma density tend to be oversimplified as they are based on statistical averages over static parameters. Understanding the global dynamics of the plasmasphere using observations from space remains a challenge, as existing density measurements are sparse and limited to locations where satellites can provide in-situ observations. In this dissertation, we demonstrate how such sparse electron density measurements can be used to reconstruct the global electron density distribution in the plasmasphere and capture its dynamic dependence on solar wind and geomagnetic conditions. First, we develop an automated algorithm to determine the electron density from in-situ measurements of the electric field on the Van Allen Probes spacecraft. In particular, we design a neural network to infer the upper hybrid resonance frequency from the dynamic spectrograms obtained with the Electric and Magnetic Field Instrument Suite and Integrated Science (EMFISIS) instrumentation suite, which is then used to calculate the electron number density. The developed Neural-network-based Upper hybrid Resonance Determination (NURD) algorithm is applied to more than four years of EMFISIS measurements to produce the publicly available electron density data set. We utilize the obtained electron density data set to develop a new global model of plasma density by employing a neural network-based modeling approach. In addition to the location, the model takes the time history of geomagnetic indices and location as inputs, and produces electron density in the equatorial plane as an output. It is extensively validated using in-situ density measurements from the Van Allen Probes mission, and also by comparing the predicted global evolution of the plasmasphere with the global IMAGE EUV images of He+ distribution. The model successfully reproduces erosion of the plasmasphere on the night side as well as plume formation and evolution, and agrees well with data. The performance of neural networks strongly depends on the availability of training data, which is limited during intervals of high geomagnetic activity. In order to provide reliable density predictions during such intervals, we can employ physics-based modeling. We develop a new approach for optimally combining the neural network- and physics-based models of the plasmasphere by means of data assimilation. The developed approach utilizes advantages of both neural network- and physics-based modeling and produces reliable global plasma density reconstructions for quiet, disturbed, and extreme geomagnetic conditions. Finally, we extend the developed machine learning-based tools and apply them to another important problem in the field of space weather, the prediction of the geomagnetic index Kp. The Kp index is one of the most widely used indicators for space weather alerts and serves as input to various models, such as for the thermosphere, the radiation belts and the plasmasphere. It is therefore crucial to predict the Kp index accurately. Previous work in this area has mostly employed artificial neural networks to nowcast and make short-term predictions of Kp, basing their inferences on the recent history of Kp and solar wind measurements at L1. We analyze how the performance of neural networks compares to other machine learning algorithms for nowcasting and forecasting Kp for up to 12 hours ahead. Additionally, we investigate several machine learning and information theory methods for selecting the optimal inputs to a predictive model of Kp. The developed tools for feature selection can also be applied to other problems in space physics in order to reduce the input dimensionality and identify the most important drivers. Research outlined in this dissertation clearly demonstrates that machine learning tools can be used to develop empirical models from sparse data and also can be used to understand the underlying physical processes. Combining machine learning, physics-based modeling and data assimilation allows us to develop novel methods benefiting from these different approaches.}, language = {en} } @misc{ZhangChenSiemiatkowskaetal.2020, author = {Zhang, Youjun and Chen, Moxian and Siemiatkowska, Beata and Toleco, Mitchell Rey and Jing, Yue and Strotmann, Vivien and Zhang, Jianghua and Stahl, Yvonne and Fernie, Alisdair R.}, title = {A highly efficient agrobacterium-mediated method for transient gene expression and functional studies in multiple plant species}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {5}, issn = {1866-8372}, doi = {10.25932/publishup-52425}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-524254}, pages = {14}, year = {2020}, abstract = {Although the use of stable transformation technology has led to great insight into gene function, its application in high-throughput studies remains arduous. Agro-infiltration have been widely used in species such as Nicotiana benthamiana for the rapid detection of gene expression and protein interaction analysis, but this technique does not work efficiently in other plant species, including Arabidopsis thaliana. As an efficient high-throughput transient expression system is currently lacking in the model plant species A. thaliana, we developed a method that is characterized by high efficiency, reproducibility, and suitability for transient expression of a variety of functional proteins in A. thaliana and 7 other plant species, including Brassica oleracea, Capsella rubella, Thellungiella salsuginea, Thellungiella halophila, Solanum tuberosum, Capsicum annuum, and N. benthamiana. Efficiency of this method was independently verified in three independent research facilities, pointing to the robustness of this technique. Furthermore, in addition to demonstrating the utility of this technique in a range of species, we also present a case study employing this method to assess protein-protein interactions in the sucrose biosynthesis pathway in Arabidopsis.}, language = {en} } @phdthesis{Zhang2023, author = {Zhang, Xiaolin}, title = {Evaluation of nitrogen dynamics in high-order streams and rivers based on high-frequency monitoring}, doi = {10.25932/publishup-60764}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-607642}, school = {Universit{\"a}t Potsdam}, pages = {X, 113}, year = {2023}, abstract = {Nutrient storage, transform and transport are important processes for achieving environmental and ecological health, as well as conducting water management plans. Nitrogen is one of the most noticeable elements due to its impacts on tremendous consequences of eutrophication in aquatic systems. Among all nitrogen components, researches on nitrate are blooming because of widespread deployments of in-situ high-frequency sensors. Monitoring and studying nitrate can become a paradigm for any other reactive substances that may damage environmental conditions and cause economic losses. Identifying nitrate storage and its transport within a catchment are inspiring to the management of agricultural activities and municipal planning. Storm events are periods when hydrological dynamics activate the exchange between nitrate storage and flow pathways. In this dissertation, long-term high-frequency monitoring data at three gauging stations in the Selke river were used to quantify event-scale nitrate concentration-discharge (C-Q) hysteretic relationships. The Selke catchment is characterized into three nested subcatchments by heterogeneous physiographic conditions and land use. With quantified hysteresis indices, impacts of seasonality and landscape gradients on C-Q relationships are explored. For example, arable area has deep nitrate legacy and can be activated with high intensity precipitation during wetting/wet periods (i.e., the strong hydrological connectivity). Hence, specific shapes of C-Q relationships in river networks can identify targeted locations and periods for agricultural management actions within the catchment to decrease nitrate output into downstream aquatic systems like the ocean. The capacity of streams for removing nitrate is of both scientific and social interest, which makes the quantification motivated. Although measurements of nitrate dynamics are advanced compared to other substances, the methodology to directly quantify nitrate uptake pathways is still limited spatiotemporally. The major problem is the complex convolution of hydrological and biogeochemical processes, which limits in-situ measurements (e.g., isotope addition) usually to small streams with steady flow conditions. This makes the extrapolation of nitrate dynamics to large streams highly uncertain. Hence, understanding of in-stream nitrate dynamic in large rivers is still necessary. High-frequency monitoring of nitrate mass balance between upstream and downstream measurement sites can quantitatively disentangle multi-path nitrate uptake dynamics at the reach scale (3-8 km). In this dissertation, we conducted this approach in large stream reaches with varying hydro-morphological and environmental conditions for several periods, confirming its success in disentangling nitrate uptake pathways and their temporal dynamics. Net nitrate uptake, autotrophic assimilation and heterotrophic uptake were disentangled, as well as their various diel and seasonal patterns. Natural streams generally can remove more nitrate under similar environmental conditions and heterotrophic uptake becomes dominant during post-wet seasons. Such two-station monitoring provided novel insights into reach-scale nitrate uptake processes in large streams. Long-term in-stream nitrate dynamics can also be evaluated with the application of water quality model. This is among the first time to use a data-model fusion approach to upscale the two-station methodology in large-streams with complex flow dynamics under long-term high-frequency monitoring, assessing the in-stream nitrate retention and its responses to drought disturbances from seasonal to sub-daily scale. Nitrate retention (both net uptake and net release) exhibited substantial seasonality, which also differed in the investigated normal and drought years. In the normal years, winter and early spring seasons exhibited extensive net releases, then general net uptake occurred after the annual high-flow season at later spring and early summer with autotrophic processes dominating and during later summer-autumn low-flow periods with heterotrophy-characteristics predominating. Net nitrate release occurred since late autumn until the next early spring. In the drought years, the late-autumn net releases were not so consistently persisted as in the normal years and the predominance of autotrophic processes occurred across seasons. Aforementioned comprehensive results of nitrate dynamics on stream scale facilitate the understanding of instream processes, as well as raise the importance of scientific monitoring schemes for hydrology and water quality parameters.}, language = {en} } @book{ZhangPlauthEberhardtetal.2020, author = {Zhang, Shuhao and Plauth, Max and Eberhardt, Felix and Polze, Andreas and Lehmann, Jens and Sejdiu, Gezim and Jabeen, Hajira and Servadei, Lorenzo and M{\"o}stl, Christian and B{\"a}r, Florian and Netzeband, Andr{\´e} and Schmidt, Rainer and Knigge, Marlene and Hecht, Sonja and Prifti, Loina and Krcmar, Helmut and Sapegin, Andrey and Jaeger, David and Cheng, Feng and Meinel, Christoph and Friedrich, Tobias and Rothenberger, Ralf and Sutton, Andrew M. and Sidorova, Julia A. and Lundberg, Lars and Rosander, Oliver and Sk{\"o}ld, Lars and Di Varano, Igor and van der Walt, Est{\´e}e and Eloff, Jan H. P. and Fabian, Benjamin and Baumann, Annika and Ermakova, Tatiana and Kelkel, Stefan and Choudhary, Yash and Cooray, Thilini and Rodr{\´i}guez, Jorge and Medina-P{\´e}rez, Miguel Angel and Trejo, Luis A. and Barrera-Animas, Ari Yair and Monroy-Borja, Ra{\´u}l and L{\´o}pez-Cuevas, Armando and Ram{\´i}rez-M{\´a}rquez, Jos{\´e} Emmanuel and Grohmann, Maria and Niederleithinger, Ernst and Podapati, Sasidhar and Schmidt, Christopher and Huegle, Johannes and de Oliveira, Roberto C. L. and Soares, F{\´a}bio Mendes and van Hoorn, Andr{\´e} and Neumer, Tamas and Willnecker, Felix and Wilhelm, Mathias and Kuster, Bernhard}, title = {HPI Future SOC Lab - Proceedings 2017}, number = {130}, editor = {Meinel, Christoph and Polze, Andreas and Beins, Karsten and Strotmann, Rolf and Seibold, Ulrich and R{\"o}dszus, Kurt and M{\"u}ller, J{\"u}rgen}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-475-3}, issn = {1613-5652}, doi = {10.25932/publishup-43310}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-433100}, publisher = {Universit{\"a}t Potsdam}, pages = {ix, 235}, year = {2020}, abstract = {The "HPI Future SOC Lab" is a cooperation of the Hasso Plattner Institute (HPI) and industry partners. Its mission is to enable and promote exchange and interaction between the research community and the industry partners. The HPI Future SOC Lab provides researchers with free of charge access to a complete infrastructure of state of the art hard and software. This infrastructure includes components, which might be too expensive for an ordinary research environment, such as servers with up to 64 cores and 2 TB main memory. The offerings address researchers particularly from but not limited to the areas of computer science and business information systems. Main areas of research include cloud computing, parallelization, and In-Memory technologies. This technical report presents results of research projects executed in 2017. Selected projects have presented their results on April 25th and November 15th 2017 at the Future SOC Lab Day events.}, language = {en} } @phdthesis{Zhang2020, author = {Zhang, Jianrui}, title = {Completely water-based emulsions as compartmentalized systems via pickering stabilization}, doi = {10.25932/publishup-47654}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-476542}, school = {Universit{\"a}t Potsdam}, pages = {II, 119}, year = {2020}, abstract = {Completely water-based systems are of interest for the development of novel material for various reasons: On one hand, they provide benign environment for biological systems and on the other hand they facilitate effective molecular transport in a membrane-free environment. In order to investigate the general potential of aqueous two-phase systems (ATPSs) for biomaterials and compartmentalized systems, various solid particles were applied to stabilize all-aqueous emulsion droplets. The target ATPS to be investigated should be prepared via mixing of two aqueous solutions of water-soluble polymers, which turn biphasic when exceeding a critical polymer concentration. Hydrophilic polymers with a wide range of molar mass such as dextran/poly(ethylene glycol) (PEG) can therefore be applied. Solid particles adsorbed at the interfaces can be exceptionally efficient stabilizers forming so-called Pickering emulsions, and nanoparticles can bridge the correlation length of polymer solutions and are thereby the best option for water-in-water emulsions. The first approach towards the investigation of ATPS was conducted with all aqueous dextran-PEG emulsions in the presence of poly(dopamine) particles (PDP) in Chapter 4. The water-in-water emulsions were formed with a PEG/dextran system via utilizing PDP as stabilizers. Studies of the formed emulsions were performed via laser scanning confocal microscope (CLSM), optical microscope (OM), cryo-scanning electron microscope (SEM) and tensiometry. The stable emulsions (at least 16 weeks) were demulsified easily via dilution or surfactant addition. Furthermore, the solid PDP at the water-water interface were crosslinked in order to inhibit demulsification of the Pickering emulsion. Transmission electron microscope (TEM) and scanning electron microscope (SEM) were used to visualize the morphology of PDP before and after crosslinking. PDP stabilized water-in-water emulsions were utilized in the following Chapter 5 to form supramolecular compartmentalized hydrogels. Here, hydrogels were prepared in pre-formed water-in-water emulsions and gelled via α-cyclodextrin-PEG (α-CD-PEG) inclusion complex formation. Studies of the formed complexes were performed via X-ray powder diffraction (XRD) and the mechanical properties of the hydrogels were measured with oscillatory shear rheology. In order to verify the compartmentalized state and its triggered decomposition, hydrogels and emulsions were assessed via OM, SEM and CLSM. The last chapter broadens the investigations from the previous two systems by utilizing various carbon nitrides (CN) as different stabilizers in ATPS. CN introduces another way to trigger demulsification, namely irradiation with visible light. Therefore, emulsification and demulsification with various triggers were probed. The investigated all aqueous multi-phase systems will act as model for future fabrication of biocompatible materials, cell micropatterning as well as separation of compartmentalized systems.}, language = {en} } @misc{ZhangIgnatova2009, author = {Zhang, Gong and Ignatova, Zoya}, title = {Generic algorithm to predict the speed of translational elongation : implications for protein biogenesis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-45007}, year = {2009}, abstract = {Synonymous codon usage and variations in the level of isoaccepting tRNAs exert a powerful selective force on translation fidelity. We have developed an algorithm to evaluate the relative rate of translation which allows large-scale comparisons of the non-uniform translation rate on the protein biogenesis. Using the complete genomes of Escherichia coli and Bacillus subtilis we show that stretches of codons pairing to minor tRNAs form putative sites to locally attenuate translation; thereby the tendency is to cluster in near proximity whereas long contiguous stretches of slow-translating triplets are avoided. The presence of slow-translating segments positively correlates with the protein length irrespective of the protein abundance. The slow-translating clusters are predominantly located down-stream of the domain boundaries presumably to fine-tune translational accuracy with the folding fidelity of multidomain proteins. Translation attenuation patterns at highly structurally and functionally conserved domains are preserved across the species suggesting a concerted selective pressure on the codon selection and species-specific tRNA abundance in these regions.}, language = {en} } @phdthesis{Zhang2008, author = {Zhang, Bo}, title = {Magnetic fields near microstructured surfaces : application to atom chips}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-28984}, school = {Universit{\"a}t Potsdam}, year = {2008}, abstract = {Microfabricated solid-state surfaces, also called atom chip', have become a well-established technique to trap and manipulate atoms. This has simplified applications in atom interferometry, quantum information processing, and studies of many-body systems. Magnetic trapping potentials with arbitrary geommetries are generated with atom chip by miniaturized current-carrying conductors integrated on a solid substrate. Atoms can be trapped and cooled to microKelvin and even nanoKelvin temperatures in such microchip trap. However, cold atoms can be significantly perturbed by the chip surface, typically held at room temperature. The magnetic field fluctuations generated by thermal currents in the chip elements may induce spin flips of atoms and result in loss, heating and decoherence. In this thesis, we extend previous work on spin flip rates induced by magnetic noise and consider the more complex geometries that are typically encountered in atom chips: layered structures and metallic wires of finite cross-section. We also discuss a few aspects of atom chips traps built with superconducting structures that have been suggested as a means to suppress magnetic field fluctuations. The thesis describes calculations of spin flip rates based on magnetic Green functions that are computed analytically and numerically. For a chip with a top metallic layer, the magnetic noise depends essentially on the thickness of that layer, as long as the layers below have a much smaller conductivity. Based on this result, scaling laws for loss rates above a thin metallic layer are derived. A good agreement with experiments is obtained in the regime where the atom-surface distance is comparable to the skin depth of metal. Since in the experiments, metallic layers are always etched to separate wires carrying different currents, the impact of the finite lateral wire size on the magnetic noise has been taken into account. The local spectrum of the magnetic field near a metallic microstructure has been investigated numerically with the help of boundary integral equations. The magnetic noise significantly depends on polarizations above flat wires with finite lateral width, in stark contrast to an infinitely wide wire. Correlations between multiple wires are also taken into account. In the last part, superconducting atom chips are considered. Magnetic traps generated by superconducting wires in the Meissner state and the mixed state are studied analytically by a conformal mapping method and also numerically. The properties of the traps created by superconducting wires are investigated and compared to normal conducting wires: they behave qualitatively quite similar and open a route to further trap miniaturization, due to the advantage of low magnetic noise. We discuss critical currents and fields for several geometries.}, language = {en} } @phdthesis{Zhang2005, author = {Zhang, Baichen}, title = {Dissection of phloem transport in cucurbitaceae by metabolomic analysis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-6644}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {This thesis aimed to investigate several fundamental and perplexing questions relating to the phloem loading and transport mechanisms of Cucurbita maxima, by combining metabolomic analysis with cell biological techniques. This putative symplastic loading species has long been used for experiments on phloem anatomy, phloem biochemistry, phloem transport physiology and phloem signalling. Symplastic loading species have been proposed to use a polymer trapping mechanism to accumulate RFO (raffinose family oligosaccharides) sugars to build up high osmotic pressure in minor veins which sustains a concentration gradient that drives mass flow. However, extensive evidence indicating a low sugar concentration in their phloem exudates is a long-known problem that conflicts with this hypothesis. Previous metabolomic analysis shows the concentration of many small molecules in phloem exudates is higher than that of leaf tissues, which indicates an active apoplastic loading step. Therefore, in the view of the phloem metabolome, a symplastic loading mechanism cannot explain how small molecules other than RFO sugars are loaded into phloem. Most studies of phloem physiology using cucurbits have neglected the possible functions of vascular architecture in phloem transport. It is well known that there are two phloem systems in cucurbits with distinctly different anatomical features: central phloem and extrafascicular phloem. However, mistaken conclusions on sources of cucurbit phloem exudation from previous reports have hindered consideration of the idea that there may be important differences between these two phloem systems. The major results are summarized as below: 1) O-linked glycans in C.maxima were structurally identified as beta-1,3 linked glucose polymers, and the composition of glycans in cucurbits was found to be species-specific. Inter-species grafting experiments proved that these glycans are phloem mobile and transported uni-directionally from scion to stock. 2) As indicated by stable isotopic labelling experiments, a considerable amount of carbon is incorporated into small metabolites in phloem exudates. However, the incorporation of carbon into RFO sugars is much faster than for other metabolites. 3) Both CO2 labelling experiments and comparative metabolomic analysis of phloem exudates and leaf tissues indicated that metabolic processes other than RFO sugar metabolism play an important role in cucurbit phloem physiology. 4) The underlying assumption that the central phloem of cucurbits continuously releases exudates after physical incision was proved wrong by rigorous experiments including direct observation by normal microscopy and combined multiple-microscopic methods. Errors in previous experimental confirmation of phloem exudation in cucurbits are critically discussed. 5) Extrafascicular phloem was proved to be functional, as indicated by phloem-mobile carboxyfluorescein tracer studies. Commissural sieve tubes interconnect phloem bundles into a complete super-symplastic network. 6) Extrafascicular phloem represents the main source of exudates following physical incision. The major transported metabolites by these extrafacicular phloem are non-sugar compounds including amino acids, O-glycans, amines. 7) Central phloem contains almost exclusively RFO sugars, the estimated amount of which is up to 1 to 2 molar. The major RFO sugar present in central phloem is stachyose. 8) Cucurbits utilize two structurally different phloem systems for transporting different group of metabolites (RFO sugars and non-RFO sugar compounds). This implies that cucurbits may use spatially separated loading mechanisms (apoplastic loading for extrafascicular phloem and symplastic loading for central phloem) for supply of nutrients to sinks. 9) Along the transport systems, RFO sugars were mainly distributed within central phloem tissues. There were only small amounts of RFO sugars present in xylem tissues (millimolar range) and trace amounts of RFO sugars in cortex and pith. The composition of small molecules in external central phloem is very different from that in internal central phloem. 10) Aggregated P-proteins were manually dissected from central phloem and analysed by both SDS-PAGE and mass spectrometry. Partial sequences of peptides were obtained by QTOF de novo sequencing from trypsin digests of three SDS-PAGE bands. None of these partial sequences shows significant homology to known cucurbit phloem proteins or other plant proteins. This proves that these central phloem proteins are a completely new group of proteins different from those in extrafascicular phloem. The extensively analysed P-proteins reported in literature to date are therefore now shown to arise from extrafascicular phloem and not central phloem, and therefore do not appear to be involved in the occlusion processes in central phloem.}, subject = {phloem}, language = {en} } @misc{ZghalColsonBlainetal.2019, author = {Zghal, Firas and Colson, Serge S. and Blain, Gr{\´e}gory and Behm, David George and Granacher, Urs and Chaouachi, Anis}, title = {Combined Resistance and Plyometric Training Is More Effective Than Plyometric Training Alone for Improving Physical Fitness of Pubertal Soccer Players}, series = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, number = {576}, issn = {1866-8364}, doi = {10.25932/publishup-43781}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-437810}, pages = {12}, year = {2019}, abstract = {The purpose of this study was to compare the effects of combined resistance and plyometric/sprint training with plyometric/sprint training or typical soccer training alone on muscle strength and power, speed, change-of-direction ability in young soccer players. Thirty-one young (14.5 ± 0.52 years; tanner stage 3-4) soccer players were randomly assigned to either a combined- (COMB, n = 14), plyometric-training (PLYO, n = 9) or an active control group (CONT, n = 8). Two training sessions were added to the regular soccer training consisting of one session of light-load high-velocity resistance exercises combined with one session of plyometric/sprint training (COMB), two sessions of plyometric/sprint training (PLYO) or two soccer training sessions (CONT). Training volume was similar between the experimental groups. Before and after 7-weeks of training, peak torque, as well as absolute and relative (normalized to torque; RTDr) rate of torque development (RTD) during maximal voluntary isometric contraction of the knee extensors (KE) were monitored at time intervals from the onset of contraction to 200 ms. Jump height, sprinting speed at 5, 10, 20-m and change-of-direction ability performances were also assessed. There were no significant between-group baseline differences. Both COMB and PLYO significantly increased their jump height (Δ14.3\%; ES = 0.94; Δ12.1\%; ES = 0.54, respectively) and RTD at mid to late phases but with greater within effect sizes in COMB in comparison with PLYO. However, significant increases in peak torque (Δ16.9\%; p < 0.001; ES = 0.58), RTD (Δ44.3\%; ES = 0.71), RTDr (Δ27.3\%; ES = 0.62) and sprint performance at 5-m (Δ-4.7\%; p < 0.001; ES = 0.73) were found in COMB without any significant pre-to-post change in PLYO and CONT groups. Our results suggest that COMB is more effective than PLYO or CONT for enhancing strength, sprint and jump performances.}, language = {en} } @phdthesis{Zeuschner2022, author = {Zeuschner, Steffen Peer}, title = {Magnetoacoustics observed with ultrafast x-ray diffraction}, doi = {10.25932/publishup-56109}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-561098}, school = {Universit{\"a}t Potsdam}, pages = {V, 128, IX}, year = {2022}, abstract = {In the present thesis I investigate the lattice dynamics of thin film hetero structures of magnetically ordered materials upon femtosecond laser excitation as a probing and manipulation scheme for the spin system. The quantitative assessment of laser induced thermal dynamics as well as generated picosecond acoustic pulses and their respective impact on the magnetization dynamics of thin films is a challenging endeavor. All the more, the development and implementation of effective experimental tools and comprehensive models are paramount to propel future academic and technological progress. In all experiments in the scope of this cumulative dissertation, I examine the crystal lattice of nanoscale thin films upon the excitation with femtosecond laser pulses. The relative change of the lattice constant due to thermal expansion or picosecond strain pulses is directly monitored by an ultrafast X-ray diffraction (UXRD) setup with a femtosecond laser-driven plasma X-ray source (PXS). Phonons and spins alike exert stress on the lattice, which responds according to the elastic properties of the material, rendering the lattice a versatile sensor for all sorts of ultrafast interactions. On the one hand, I investigate materials with strong magneto-elastic properties; The highly magnetostrictive rare-earth compound TbFe2, elemental Dysprosium or the technological relevant Invar material FePt. On the other hand I conduct a comprehensive study on the lattice dynamics of Bi1Y2Fe5O12 (Bi:YIG), which exhibits high-frequency coherent spin dynamics upon femtosecond laser excitation according to the literature. Higher order standing spinwaves (SSWs) are triggered by coherent and incoherent motion of atoms, in other words phonons, which I quantified with UXRD. We are able to unite the experimental observations of the lattice and magnetization dynamics qualitatively and quantitatively. This is done with a combination of multi-temperature, elastic, magneto-elastic, anisotropy and micro-magnetic modeling. The collective data from UXRD, to probe the lattice, and time-resolved magneto-optical Kerr effect (tr-MOKE) measurements, to monitor the magnetization, were previously collected at different experimental setups. To improve the precision of the quantitative assessment of lattice and magnetization dynamics alike, our group implemented a combination of UXRD and tr-MOKE in a singular experimental setup, which is to my knowledge, the first of its kind. I helped with the conception and commissioning of this novel experimental station, which allows the simultaneous observation of lattice and magnetization dynamics on an ultrafast timescale under identical excitation conditions. Furthermore, I developed a new X-ray diffraction measurement routine which significantly reduces the measurement time of UXRD experiments by up to an order of magnitude. It is called reciprocal space slicing (RSS) and utilizes an area detector to monitor the angular motion of X-ray diffraction peaks, which is associated with lattice constant changes, without a time-consuming scan of the diffraction angles with the goniometer. RSS is particularly useful for ultrafast diffraction experiments, since measurement time at large scale facilities like synchrotrons and free electron lasers is a scarce and expensive resource. However, RSS is not limited to ultrafast experiments and can even be extended to other diffraction techniques with neutrons or electrons.}, language = {en} } @misc{ZeuschnerParpiievPezeriletal.2019, author = {Zeuschner, Steffen and Parpiiev, Tymur and Pezeril, Thomas and Hillion, Arnaud and Dumesnil, Karine and Anane, Abdelmadjid and Pudell, Jan-Etienne and Willig, Lisa and R{\"o}ssle, Matthias and Herzog, Marc and von Reppert, Alexander and Bargheer, Matias}, title = {Tracking picosecond strain pulses in heterostructures that exhibit giant magnetostriction}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-naturwissenschaftliche Reihe}, number = {706}, issn = {1866-8372}, doi = {10.25932/publishup-42845}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-428457}, pages = {9}, year = {2019}, abstract = {We combine ultrafast X-ray diffraction (UXRD) and time-resolved Magneto-Optical Kerr Effect (MOKE) measurements to monitor the strain pulses in laser-excited TbFe2/Nb heterostructures. Spatial separation of the Nb detection layer from the laser excitation region allows for a background-free characterization of the laser-generated strain pulses. We clearly observe symmetric bipolar strain pulses if the excited TbFe2 surface terminates the sample and a decomposition of the strain wavepacket into an asymmetric bipolar and a unipolar pulse, if a SiO2 glass capping layer covers the excited TbFe2 layer. The inverse magnetostriction of the temporally separated unipolar strain pulses in this sample leads to a MOKE signal that linearly depends on the strain pulse amplitude measured through UXRD. Linear chain model simulations accurately predict the timing and shape of UXRD and MOKE signals that are caused by the strain reflections from multiple interfaces in the heterostructure.}, language = {en} } @misc{ZeuschnerMatternPudelletal.2021, author = {Zeuschner, S. P. and Mattern, M. and Pudell, Jan-Etienne and von Reppert, A. and R{\"o}ssle, M. and Leitenberger, Wolfram and Schwarzkopf, J. and Boschker, J. E. and Herzog, Marc and Bargheer, Matias}, title = {Reciprocal space slicing}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1137}, issn = {1866-8372}, doi = {10.25932/publishup-49976}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-499761}, pages = {13}, year = {2021}, abstract = {An experimental technique that allows faster assessment of out-of-plane strain dynamics of thin film heterostructures via x-ray diffraction is presented. In contrast to conventional high-speed reciprocal space-mapping setups, our approach reduces the measurement time drastically due to a fixed measurement geometry with a position-sensitive detector. This means that neither the incident (ω) nor the exit (2θ) diffraction angle is scanned during the strain assessment via x-ray diffraction. Shifts of diffraction peaks on the fixed x-ray area detector originate from an out-of-plane strain within the sample. Quantitative strain assessment requires the determination of a factor relating the observed shift to the change in the reciprocal lattice vector. The factor depends only on the widths of the peak along certain directions in reciprocal space, the diffraction angle of the studied reflection, and the resolution of the instrumental setup. We provide a full theoretical explanation and exemplify the concept with picosecond strain dynamics of a thin layer of NbO2.}, language = {en} } @misc{ZennerBoettingerKonigorski2022, author = {Zenner, Alexander M. and B{\"o}ttinger, Erwin and Konigorski, Stefan}, title = {StudyMe}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, number = {18}, doi = {10.25932/publishup-58976}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-589763}, pages = {15}, year = {2022}, abstract = {N-of-1 trials are multi-crossover self-experiments that allow individuals to systematically evaluate the effect of interventions on their personal health goals. Although several tools for N-of-1 trials exist, there is a gap in supporting non-experts in conducting their own user-centric trials. In this study, we present StudyMe, an open-source mobile application that is freely available from https://play.google.com/store/apps/details?id=health.studyu.me and offers users flexibility and guidance in configuring every component of their trials. We also present research that informed the development of StudyMe, focusing on trial creation. Through an initial survey with 272 participants, we learned that individuals are interested in a variety of personal health aspects and have unique ideas on how to improve them. In an iterative, user-centered development process with intermediate user tests, we developed StudyMe that features an educational part to communicate N-of-1 trial concepts. A final empirical evaluation of StudyMe showed that all participants were able to create their own trials successfully using StudyMe and the app achieved a very good usability rating. Our findings suggest that StudyMe provides a significant step towards enabling individuals to apply a systematic science-oriented approach to personalize health-related interventions and behavior modifications in their everyday lives.}, language = {en} } @phdthesis{Zenichowski2012, author = {Zenichowski, Karl}, title = {Quantum dynamical study of Si(100) surface-mounted, STM-driven switches at the atomic and molecular scale}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-62156}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {The aim of this thesis is the quantum dynamical study of two examples of scanning tunneling microscope (STM)-controllable, Si(100)(2x1) surface-mounted switches of atomic and molecular scale. The first example considers the switching of single H-atoms between two dangling-bond chemisorption sites on a Si-dimer of the Si(100) surface (Grey et al., 1996). The second system examines the conformational switching of single 1,5-cyclooctadiene molecules chemisorbed on the Si(100) surface (Nacci et al., 2008). The temporal dynamics are provided by the propagation of the density matrix in time via an according set of equations of motion (EQM). The latter are based on the open-system density matrix theory in Lindblad form. First order perturbation theory is used to evaluate those transition rates between vibrational levels of the system part. In order to account for interactions with the surface phonons, two different dissipative models are used, namely the bilinear, harmonic and the Ohmic bath model. IET-induced vibrational transitions in the system are due to the dipole- and the resonance-mechanism. A single surface approach is used to study the influence of dipole scattering and resonance scattering in the below-threshold regime. Further, a second electronic surface was included to study the resonance-induced switching in the above-threshold regime. Static properties of the adsorbate, e.g., potentials and dipole function and potentials, are obtained from quantum chemistry and used within the established quantum dynamical models.}, language = {en} } @misc{ZemellaThoringHoffmeisteretal.2018, author = {Zemella, Anne and Thoring, Lena and Hoffmeister, Christian and Šamal{\´i}kov{\´a}, M{\´a}ria and Ehren, Patricia and W{\"u}stenhagen, Doreen Anja and Kubick, Stefan}, title = {Cell-free protein synthesis as a novel tool for directed glycoengineering of active erythropoietin}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {824}, doi = {10.25932/publishup-42701}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427017}, pages = {14}, year = {2018}, abstract = {As one of the most complex post-translational modification, glycosylation is widely involved in cell adhesion, cell proliferation and immune response. Nevertheless glycoproteins with an identical polypeptide backbone mostly differ in their glycosylation patterns. Due to this heterogeneity, the mapping of different glycosylation patterns to their associated function is nearly impossible. In the last years, glycoengineering tools including cell line engineering, chemoenzymatic remodeling and site-specific glycosylation have attracted increasing interest. The therapeutic hormone erythropoietin (EPO) has been investigated in particular by various groups to establish a production process resulting in a defined glycosylation pattern. However commercially available recombinant human EPO shows batch-to-batch variations in its glycoforms. Therefore we present an alternative method for the synthesis of active glycosylated EPO with an engineered O-glycosylation site by combining eukaryotic cell-free protein synthesis and site-directed incorporation of non-canonical amino acids with subsequent chemoselective modifications.}, language = {en} } @phdthesis{Zemanova2007, author = {Zemanov{\´a}, Lucia}, title = {Structure-function relationship in hierarchical model of brain networks}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-18400}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {The mammalian brain is, with its numerous neural elements and structured complex connectivity, one of the most complex systems in nature. Recently, large-scale corticocortical connectivities, both structural and functional, have received a great deal of research attention, especially using the approach of complex networks. Here, we try to shed some light on the relationship between structural and functional connectivities by studying synchronization dynamics in a realistic anatomical network of cat cortical connectivity. We model the cortical areas by a subnetwork of interacting excitable neurons (multilevel model) and by a neural mass model (population model). With weak couplings, the multilevel model displays biologically plausible dynamics and the synchronization patterns reveal a hierarchical cluster organization in the network structure. We can identify a group of brain areas involved in multifunctional tasks by comparing the dynamical clusters to the topological communities of the network. With strong couplings of multilevel model and by using neural mass model, the dynamics are characterized by well-defined oscillations. The synchronization patterns are mainly determined by the node intensity (total input strengths of a node); the detailed network topology is of secondary importance. The biologically improved multilevel model exhibits similar dynamical patterns in the two regimes. Thus, the study of synchronization in a multilevel complex network model of cortex can provide insights into the relationship between network topology and functional organization of complex brain networks.}, language = {en} } @phdthesis{Zeitz2022, author = {Zeitz, Maria}, title = {Modeling the future resilience of the Greenland Ice Sheet}, doi = {10.25932/publishup-56883}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-568839}, school = {Universit{\"a}t Potsdam}, pages = {x, 189}, year = {2022}, abstract = {The Greenland Ice Sheet is the second-largest mass of ice on Earth. Being almost 2000 km long, more than 700 km wide, and more than 3 km thick at the summit, it holds enough ice to raise global sea levels by 7m if melted completely. Despite its massive size, it is particularly vulnerable to anthropogenic climate change: temperatures over the Greenland Ice Sheet have increased by more than 2.7◦C in the past 30 years, twice as much as the global mean temperature. Consequently, the ice sheet has been significantly losing mass since the 1980s and the rate of loss has increased sixfold since then. Moreover, it is one of the potential tipping elements of the Earth System, which might undergo irreversible change once a warming threshold is exceeded. This thesis aims at extending the understanding of the resilience of the Greenland Ice Sheet against global warming by analyzing processes and feedbacks relevant to its centennial to multi-millennial stability using ice sheet modeling. One of these feedbacks, the melt-elevation-feedback is driven by the temperature rise with decreasing altitudes: As the ice sheet melts, its thickness and surface elevation decrease, exposing the ice surface to warmer air and thus increasing the melt rates even further. The glacial isostatic adjustment (GIA) can partly mitigate this melt-elevation feedback as the bedrock lifts in response to an ice load decrease, forming the negative GIA feedback. In my thesis, I show that the interaction between these two competing feedbacks can lead to qualitatively different dynamical responses of the Greenland Ice Sheet to warming - from permanent loss to incomplete recovery, depending on the feedback parameters. My research shows that the interaction of those feedbacks can initiate self-sustained oscillations of the ice volume while the climate forcing remains constant. Furthermore, the increased surface melt changes the optical properties of the snow or ice surface, e.g. by lowering their albedo, which in turn enhances melt rates - a process known as the melt-albedo feedback. Process-based ice sheet models often neglect this melt-albedo feedback. To close this gap, I implemented a simplified version of the diurnal Energy Balance Model, a computationally efficient approach that can capture the first-order effects of the melt-albedo feedback, into the Parallel Ice Sheet Model (PISM). Using the coupled model, I show in warming experiments that the melt-albedo feedback almost doubles the ice loss until the year 2300 under the low greenhouse gas emission scenario RCP2.6, compared to simulations where the melt-albedo feedback is neglected, and adds up to 58\% additional ice loss under the high emission scenario RCP8.5. Moreover, I find that the melt-albedo feedback dominates the ice loss until 2300, compared to the melt-elevation feedback. Another process that could influence the resilience of the Greenland Ice Sheet is the warming induced softening of the ice and the resulting increase in flow. In my thesis, I show with PISM how the uncertainty in Glen's flow law impacts the simulated response to warming. In a flow line setup at fixed climatic mass balance, the uncertainty in flow parameters leads to a range of ice loss comparable to the range caused by different warming levels. While I focus on fundamental processes, feedbacks, and their interactions in the first three projects of my thesis, I also explore the impact of specific climate scenarios on the sea level rise contribution of the Greenland Ice Sheet. To increase the carbon budget flexibility, some warming scenarios - while still staying within the limits of the Paris Agreement - include a temporal overshoot of global warming. I show that an overshoot by 0.4◦C increases the short-term and long-term ice loss from Greenland by several centimeters. The long-term increase is driven by the warming at high latitudes, which persists even when global warming is reversed. This leads to a substantial long-term commitment of the sea level rise contribution from the Greenland Ice Sheet. Overall, in my thesis I show that the melt-albedo feedback is most relevant for the ice loss of the Greenland Ice Sheet on centennial timescales. In contrast, the melt-elevation feedback and its interplay with the GIA feedback become increasingly relevant on millennial timescales. All of these influence the resilience of the Greenland Ice Sheet against global warming, in the near future and on the long term.}, language = {en} } @misc{ZehbeKolloscheLardongetal.2017, author = {Zehbe, Kerstin and Kollosche, Matthias and Lardong, Sebastian and Kelling, Alexandra and Schilde, Uwe and Taubert, Andreas}, title = {Ionogels based on poly(methyl methacrylate) and metal-containing ionic liquids}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-400607}, pages = {16}, year = {2017}, abstract = {Ionogels (IGs) based on poly(methyl methacrylate) (PMMA) and the metal-containing ionic liquids (ILs) bis-1-butyl-3-methlimidazolium tetrachloridocuprate(II), tetrachloride cobaltate(II), and tetrachlorido manganate(II) have been synthesized and their mechanical and electrical properties have been correlated with their microstructure. Unlike many previous examples, the current IGs show a decreasing stability in stress-strain experiments on increasing IL fractions. The conductivities of the current IGs are lower than those observed in similar examples in the literature. Both effects are caused by a two-phase structure with micrometer-sized IL-rich domains homogeneously dispersed an IL-deficient continuous PMMA phase. This study demonstrates that the IL-polymer miscibility and the morphology of the IGs are key parameters to control the (macroscopic) properties of IGs.}, language = {en} } @misc{ZeedenObrehtVeresetal.2020, author = {Zeeden, Christian and Obreht, Igor and Veres, Daniel and Kaboth-Bahr, Stefanie and Hošek, Jan and Marković, Slobodan B. and B{\"o}sken, Janina and Lehmkuhl, Frank and Rolf, Christian and Hambach, Ulrich}, title = {Smoothed millennial-scale palaeoclimatic reference data as unconventional comparison targets: Application to European loess records}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1}, issn = {1866-8372}, doi = {10.25932/publishup-52427}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-524271}, pages = {15}, year = {2020}, abstract = {Millennial-scale palaeoclimate variability has been documented in various terrestrial and marine palaeoclimate proxy records throughout the Northern Hemisphere for the last glacial cycle. Its clear expression and rapid shifts between different states of climate (Greenland Interstadials and Stadials) represents a correlation tool beyond the resolution of e.g. luminescence dating, especially relevant for terrestrial deposits. Usually, comparison of terrestrial proxy datasets and the Greenland ice cores indicates a complex expression of millennial-scale climate variability as recorded in terrestrial geoarchives including loess. Loess is the most widespread terrestrial geoarchive of the Quaternary and especially widespread over Eurasia. However, loess often records a smoothed representation of millennial-scale variability without all fidelity when compared to the Greenland data, this being a relevant limiting feature in integrating loess with other palaeoclimate records. To better understand the loess proxy-response to millennial-scale climate variability, we simulate a proxy signal smoothing by natural processes through application of low-pass filters of delta O-18 data from Greenland, a high-resolution palaeoclimate reference record, alongside speleothem isotope records from the Black Sea-Mediterranean region. We show that low-pass filters represent rather simple models for better constraining the expression of millennial-scale climate variability in low sedimentation environments, and in sediments where proxy-response signals are most likely affected by natural smoothing (by e.g. bioturbation). Interestingly, smoothed datasets from Greenland and the Black Sea-Mediterranean region are most similar in the last similar to 15 ka and between similar to 50-30 ka. Between similar to 30-15 ka, roughly corresponding to the Last Glacial Maximum and the deglaciation, the records show dissimilarities, challenging the construction of robust correlative time-scales in this age range. From our analysis it becomes apparent that patterns of palaeoclimate signals in loess-palaeosol sequences often might be better explained by smoothed Greenland reference data than the original high-resolution Greenland dataset, or other reference data. This opens the possibility to better assess the temporal resolution and palaeoclimate potential of loess-palaeosol sequences in recording supra-regional climate patterns, as well as to securely integrate loess with other chronologically better-resolved palaeoclimate records.}, language = {en} } @phdthesis{Zeckra2020, author = {Zeckra, Martin}, title = {Seismological and seismotectonic analysis of the northwestern Argentine Central Andean foreland}, doi = {10.25932/publishup-47324}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-473240}, school = {Universit{\"a}t Potsdam}, pages = {vii, 120}, year = {2020}, abstract = {After a severe M W 5.7 earthquake on October 17, 2015 in El Galp{\´o}n in the province of Salta NW Argentina, I installed a local seismological network around the estimated epicenter. The network covered an area characterized by inherited Cretaceous normal faults and neotectonic faults with unknown recurrence intervals, some of which may have been reactivated normal faults. The 13 three-component seismic stations recorded data continuously for 15 months. The 2015 earthquake took place in the Santa B{\´a}rbara System of the Andean foreland, at about 17km depth. This region is the easternmost morphostructural region of the central Andes. As a part of the broken foreland, it is bounded to the north by the Subandes fold-and-thrust belt and the Sierras Pampeanas to the south; to the east lies the Chaco-Paran{\´a} basin. A multi-stage morphotectonic evolution with thick-skinned basement uplift and coeval thin-skinned deformation in the intermontane basins is suggested for the study area. The release of stresses associated with the foreland deformation can result in strong earthquakes, as the study area is known for recurrent and historical, destructive earthquakes. The available continuous record reaches back in time, when the strongest event in 1692 (magnitude 7 or intensity IX) destroyed the city of Esteco. Destructive earthquakes and surface deformation are thus a hallmark of this part of the Andean foreland. With state-of-the-art Python packages (e.g. pyrocko, ObsPy), a semi-automatic approach is followed to analyze the collected continuous data of the seismological network. The resulting 1435 hypocenter locations consist of three different groups: 1.) local crustal earthquakes (nearly half of the events belong to this group), 2.) interplate activity, of regional distance in the slab of the Nazca-plate, and 3.) very deep earthquakes at about 600km depth. My major interest focused on the first event class. Those crustal events are partly aftershock events of the El Galp{\´o}n earthquake and a second earthquake, in the south of the same fault. Further events can be considered as background seismicity of other faults within the study area. Strikingly, the seismogenic zone encompass the whole crust and propagates brittle deformation down, close to the Moho. From the collected seismological data, a local seismic velocity model is estimated, using VELEST. After the execution of various stability tests, the robust minimum 1D-velocity model implies guiding values for the composition of the local, subsurface structure of the crust. Afterwards, performing a hypocenter relocation enables the assignment of individual earthquakes to aftershock clusters or extended seismotectonic structures. This allows the mapping of previously unknown seismogenic faults. Finally, focal mechanisms are modeled for events with acurately located hypocenters, using the newly derived local velocity model. A compressive regime is attested by the majority of focal mechanisms, while the strike direction of the individual seismogenic structures is in agreement with the overall north - south orientation of the Central Andes, its mountain front, and individual mountain ranges in the southern Santa-B{\´a}rbara-System.}, language = {en} } @misc{ZechSchuchPerezChaparroetal.2020, author = {Zech, Philipp and Schuch, Felipe and P{\´e}rez Chaparro, Camilo Germ{\´a}n Alberto and Kangas, Maria and Rapp, Michael Armin and Heissel, Andreas}, title = {Exercise, Comorbidities, and Health-Related Quality of Life in People Living with HIV}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {661}, issn = {1866-8364}, doi = {10.25932/publishup-48028}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-480289}, pages = {15}, year = {2020}, abstract = {(1) Background: People with HIV (PWH) may perform more than one type of exercise cumulatively. The objective of this study is to investigate recreational exercise and its association with health-related quality of life (HRQOL) and comorbidities in relation to potential covariates. (2) Methods: The HIBES study (HIV-Begleiterkrankungen-Sport) is a cross-sectional study for people with HIV. The differences between non-exercisers versus exercisers (cumulated vs. single type of exercises) were investigated using regression models based on 454 participants. (3) Results: Exercisers showed a higher HRQOL score compared to non-exercisers (Wilcox r = 0.2 to 0.239). Psychological disorders were identified as the main covariate. Participants performing exercise cumulatively showed higher scores in duration, frequency, and intensity when compared to participants performing only one type of exercise. The mental health summary score was higher for the cumulated and single type of exercise if a psychological disorder existed. Duration and intensity were associated with an increase of HRQOL, whilst a stronger association between psychological disorders and exercise variables were evident. Exercise duration (minutes) showed a significant effect on QOL (standardized beta = 0.1) and for participants with psychological disorders (standardized beta = 0.3), respectively. (4) Conclusions: Psychological disorders and other covariates have a prominent effect on HRQOL and its association with exercise. For PWH with a psychological disorder, a stronger relationship between HRQOL with exercise duration and intensity emerged. However, differentiation of high-HRQOL individuals warrants further investigation by considering additional factors.}, language = {en} } @phdthesis{Zaupa2010, author = {Zaupa, Alessandro}, title = {Physical crosslinking of gelatin : a supramolecular approach to biomaterials}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52888}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {This work describes the realization of physically crosslinked networks based on gelatin by the introduction of functional groups enabling specific supramolecular interactions. Molecular models were developed in order to predict the material properties and permit to establish a knowledge-based approach to material design. The effect of additional supramolecular interactions with hydroxyapaptite was then studied in composite materials. The calculated properties are compared to experimental results to validate the models. The models are then further used for the study of physically crosslinked networks. Gelatin was functionalized with desaminotyrosine (DAT) and desaminotyrosyl-tyrosine (DATT) side groups, derived from the natural amino acid tyrosine. These group can potentially undergo to π-π and hydrogen bonding interactions also under physiological conditions. Molecular dynamics (MD) simulations were performed on models with 0.8 wt.-\% or 25 wt.-\% water content, using the second generation forcefield CFF91. The validation of the models was obtained by the comparison with specific experimental data such as, density, peptide conformational angles and X-ray scattering spectra. The models were then used to predict the supramolecular organization of the polymer chain, analyze the formation of physical netpoints and calculate the mechanical properties. An important finding of simulation was that with the increase of aromatic groups also the number of observed physical netpoints increased. The number of relatively stable physical netpoints, on average zero 0 for natural gelatin, increased to 1 and 6 for DAT and DATT functionalized gelatins respectively. A comparison with the Flory-Rehner model suggested reduced equilibrium swelling by factor 6 of the DATT-functionalized materials in water. The functionalized gelatins could be synthesized by chemoselective coupling of the free carboxylic acid groups of DAT and DATT to the free amino groups of gelatin. At 25 wt.-\% water content, the simulated and experimentally determined elastic mechanical properties (e.g. Young Modulus) were both in the order of GPa and were not influenced by the degree of aromatic modification. The experimental equilibrium degree of swelling in water decreased with increasing the number of inserted aromatic functions (from 2800 vol.-\% for pure gelatin to 300 vol.-\% for the DATT modified gelatin), at the same time, Young's modulus, elongation at break, and maximum tensile strength increased. It could be show that the functionalization with DAT and DATT influences the chain organization of gelatin based materials together with a controlled drying condition. Functionalization with DAT and DATT lead to a drastic reduction of helical renaturation, that could be more finely controlled by the applied drying conditions. The properties of the materials could then be influenced by application of two independent methods. Composite materials of DAT and DATT functionalized gelatins with hydroxyapatite (HAp) show a drastic reduction of swelling degree. In tensile tests and rheological measurements, the composites equilibrated in water had increased Young's moduli (from 200 kPa up to 2 MPa) and tensile strength (from 57 kPa up to 1.1 MPa) compared to the natural polymer matrix without affecting the elongation at break. Furthermore, an increased thermal stability from 40 °C to 85 °C of the networks could be demonstrated. The differences of the behaviour of the functionalized gelatins to pure gelatin as matrix suggested an additional stabilizing bond between the incorporated aromatic groups to the hydroxyapatite.}, language = {en} } @book{ZassZagrebnovSukiasyanetal.2020, author = {Zass, Alexander and Zagrebnov, Valentin and Sukiasyan, Hayk and Melkonyan, Tatev and Rafler, Mathias and Poghosyan, Suren and Zessin, Hans and Piatnitski, Andrey and Zhizhina, Elena and Pechersky, Eugeny and Pirogov, Sergei and Yambartsev, Anatoly and Mazzonetto, Sara and Lykov, Alexander and Malyshev, Vadim and Khachatryan, Linda and Nahapetian, Boris and Jursenas, Rytis and Jansen, Sabine and Tsagkarogiannis, Dimitrios and Kuna, Tobias and Kolesnikov, Leonid and Hryniv, Ostap and Wallace, Clare and Houdebert, Pierre and Figari, Rodolfo and Teta, Alessandro and Boldrighini, Carlo and Frigio, Sandro and Maponi, Pierluigi and Pellegrinotti, Alessandro and Sinai, Yakov G.}, title = {Proceedings of the XI international conference stochastic and analytic methods in mathematical physics}, number = {6}, editor = {Roelly, Sylvie and Rafler, Mathias and Poghosyan, Suren}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-485-2}, issn = {2199-4951}, doi = {10.25932/publishup-45919}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-459192}, publisher = {Universit{\"a}t Potsdam}, pages = {xiv, 194}, year = {2020}, abstract = {The XI international conference Stochastic and Analytic Methods in Mathematical Physics was held in Yerevan 2 - 7 September 2019 and was dedicated to the memory of the great mathematician Robert Adol'fovich Minlos, who passed away in January 2018. The present volume collects a large majority of the contributions presented at the conference on the following domains of contemporary interest: classical and quantum statistical physics, mathematical methods in quantum mechanics, stochastic analysis, applications of point processes in statistical mechanics. The authors are specialists from Armenia, Czech Republic, Denmark, France, Germany, Italy, Japan, Lithuania, Russia, UK and Uzbekistan. A particular aim of this volume is to offer young scientists basic material in order to inspire their future research in the wide fields presented here.}, language = {en} } @article{Zass2020, author = {Zass, Alexander}, title = {A Gibbs point process of diffusions: Existence and uniqueness}, series = {Lectures in pure and applied mathematics}, journal = {Lectures in pure and applied mathematics}, number = {6}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-485-2}, issn = {2199-4951}, doi = {10.25932/publishup-47195}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471951}, pages = {13 -- 22}, year = {2020}, language = {en} }