@misc{NojimaKonishiFreemanetal.2016, author = {Nojima, Hiroyuki and Konishi, Takanori and Freeman, Christopher M. and Schuster, Rebecca M. and Japtok, Lukasz and Kleuser, Burkhard and Edwards, Michael J. and Gulbins, Erich and Lentsch, Alex B.}, title = {Chemokine receptors, CXCR1 and CXCR2, differentially regulate exosome release in hepatocytes}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {538}, issn = {1866-8372}, doi = {10.25932/publishup-41088}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410885}, pages = {15}, year = {2016}, abstract = {Exosomes are small membrane vesicles released by different cell types, including hepatocytes, that play important roles in intercellular communication. We have previously demonstrated that hepatocyte-derived exosomes contain the synthetic machinery to form sphingosine-1-phosphate (S1P) in target hepatocytes resulting in proliferation and liver regeneration after ischemia/reperfusion (I/R) injury. We also demonstrated that the chemokine receptors, CXCR1 and CXCR2, regulate liver recovery and regeneration after I/R injury. In the current study, we sought to determine if the regulatory effects of CXCR1 and CXCR2 on liver recovery and regeneration might occur via altered release of hepatocyte exosomes. We found that hepatocyte release of exosomes was dependent upon CXCR1 and CXCR2. CXCR1-deficient hepatocytes produced fewer exosomes, whereas CXCR2-deficient hepatocytes produced more exosomes compared to their wild-type controls. In CXCR2-deficient hepatocytes, there was increased activity of neutral sphingomyelinase (Nsm) and intracellular ceramide. CXCR1-deficient hepatocytes had no alterations in Nsm activity or ceramide production. Interestingly, exosomes from CXCR1-deficient hepatocytes had no effect on hepatocyte proliferation, due to a lack of neutral ceramidase and sphingosine kinase. The data demonstrate that CXCR1 and CXCR2 regulate hepatocyte exosome release. The mechanism utilized by CXCR1 remains elusive, but CXCR2 appears to modulate Nsm activity and resultant production of ceramide to control exosome release. CXCR1 is required for packaging of enzymes into exosomes that mediate their hepatocyte proliferative effect.}, language = {en} } @misc{MemczakLausterKaretal.2016, author = {Memczak, Henry and Lauster, Daniel and Kar, Parimal and Di Lella, Santiago and Volkmer, Rudolf and Knecht, Volker and Herrmann, Andreas and Ehrentreich-F{\"o}rster, Eva and Bier, Frank Fabian and St{\"o}cklein, Walter F. M.}, title = {Anti-hemagglutinin antibody derived lead peptides for inhibitors of influenza virus binding}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {536}, issn = {1866-8372}, doi = {10.25932/publishup-41087}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410872}, pages = {24}, year = {2016}, abstract = {Antibodies against spike proteins of influenza are used as a tool for characterization of viruses and therapeutic approaches. However, development, production and quality control of antibodies is expensive and time consuming. To circumvent these difficulties, three peptides were derived from complementarity determining regions of an antibody heavy chain against influenza A spike glycoprotein. Their binding properties were studied experimentally, and by molecular dynamics simulations. Two peptide candidates showed binding to influenza A/Aichi/2/68 H3N2. One of them, termed PeB, with the highest affinity prevented binding to and infection of target cells in the micromolar region without any cytotoxic effect. PeB matches best the conserved receptor binding site of hemagglutinin. PeB bound also to other medical relevant influenza strains, such as human-pathogenic A/California/7/2009 H1N1, and avian-pathogenic A/MuteSwan/Rostock/R901/2006 H7N1. Strategies to improve the affinity and to adapt specificity are discussed and exemplified by a double amino acid substituted peptide, obtained by substitutional analysis. The peptides and their derivatives are of great potential for drug development as well as biosensing.}, language = {en} } @misc{LangerwischWalzRammigetal.2016, author = {Langerwisch, Fanny and Walz, Ariane and Rammig, Anja and Tietjen, Britta and Thonicke, Kirsten and Cramer, Wolfgang}, title = {Deforestation in Amazonia impacts riverine carbon dynamics}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {535}, issn = {1866-8372}, doi = {10.25932/publishup-41022}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410225}, pages = {16}, year = {2016}, abstract = {Fluxes of organic and inorganic carbon within the Amazon basin are considerably controlled by annual flooding, which triggers the export of terrigenous organic material to the river and ultimately to the Atlantic Ocean. The amount of carbon imported to the river and the further conversion, transport and export of it depend on temperature, atmospheric CO2, terrestrial productivity and carbon storage, as well as discharge. Both terrestrial productivity and discharge are influenced by climate and land use change. The coupled LPJmL and RivCM model system (Langerwisch et al., 2016) has been applied to assess the combined impacts of climate and land use change on the Amazon riverine carbon dynamics. Vegetation dynamics (in LPJmL) as well as export and conversion of terrigenous carbon to and within the river (RivCM) are included. The model system has been applied for the years 1901 to 2099 under two deforestation scenarios and with climate forcing of three SRES emission scenarios, each for five climate models. We find that high deforestation (business-as-usual scenario) will strongly decrease (locally by up to 90 \%) riverine particulate and dissolved organic carbon amount until the end of the current century. At the same time, increase in discharge leaves net carbon transport during the first decades of the century roughly unchanged only if a sufficient area is still forested. After 2050 the amount of transported carbon will decrease drastically. In contrast to that, increased temperature and atmospheric CO2 concentration determine the amount of riverine inorganic carbon stored in the Amazon basin. Higher atmospheric CO2 concentrations increase riverine inorganic carbon amount by up to 20\% (SRES A2). The changes in riverine carbon fluxes have direct effects on carbon export, either to the atmosphere via outgassing or to the Atlantic Ocean via discharge. The outgassed carbon will increase slightly in the Amazon basin, but can be regionally reduced by up to 60\% due to deforestation. The discharge of organic carbon to the ocean will be reduced by about 40\% under the most severe deforestation and climate change scenario. These changes would have local and regional consequences on the carbon balance and habitat characteristics in the Amazon basin itself as well as in the adjacent Atlantic Ocean.}, language = {en} } @misc{PrahlRybskiBoettleetal.2016, author = {Prahl, Boris F. and Rybski, Diego and Boettle, Markus and Kropp, J{\"u}rgen}, title = {Damage functions for climate-related hazards}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {534}, issn = {1866-8372}, doi = {10.25932/publishup-41018}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410184}, pages = {15}, year = {2016}, abstract = {Most climate change impacts manifest in the form of natural hazards. Damage assessment typically relies on damage functions that translate the magnitude of extreme events to a quantifiable damage. In practice, the availability of damage functions is limited due to a lack of data sources and a lack of understanding of damage processes. The study of the characteristics of damage functions for different hazards could strengthen the theoretical foundation of damage functions and support their development and validation. Accordingly, we investigate analogies of damage functions for coastal flooding and for wind storms and identify a unified approach. This approach has general applicability for granular portfolios and may also be applied, for example, to heat-related mortality. Moreover, the unification enables the transfer of methodology between hazards and a consistent treatment of uncertainty. This is demonstrated by a sensitivity analysis on the basis of two simple case studies (for coastal flood and storm damage). The analysis reveals the relevance of the various uncertainty sources at varying hazard magnitude and on both the microscale and the macroscale level. Main findings are the dominance of uncertainty from the hazard magnitude and the persistent behaviour of intrinsic uncertainties on both scale levels. Our results shed light on the general role of uncertainties and provide useful insight for the application of the unified approach.}, language = {en} } @misc{FrielerMengelLevermann2016, author = {Frieler, Katja and Mengel, Matthias and Levermann, Anders}, title = {Delaying future sea-level rise by storing water in Antarctica}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {533}, issn = {1866-8372}, doi = {10.25932/publishup-41023}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410234}, pages = {8}, year = {2016}, abstract = {Even if greenhouse gas emissions were stopped today, sea level would continue to rise for centuries, with the long-term sea-level commitment of a 2 degrees C warmer world significantly exceeding 2 m. In view of the potential implications for coastal populations and ecosystems worldwide, we investigate, from an ice-dynamic perspective, the possibility of delaying sea-level rise by pumping ocean water onto the surface of the Antarctic ice sheet. We find that due to wave propagation ice is discharged much faster back into the ocean than would be expected from a pure advection with surface velocities. The delay time depends strongly on the distance from the coastline at which the additional mass is placed and less strongly on the rate of sea-level rise that is mitigated. A millennium-scale storage of at least 80\% of the additional ice requires placing it at a distance of at least 700 km from the coastline. The pumping energy required to elevate the potential energy of ocean water to mitigate the currently observed 3 mmyr(-1) will exceed 7\% of the current global primary energy supply. At the same time, the approach offers a comprehensive protection for entire coastlines particularly including regions that cannot be protected by dikes.}, language = {en} } @misc{KuikLauerChurkinaetal.2016, author = {Kuik, Friderike and Lauer, Axel and Churkina, Galina and Denier Van der Gon, Hugo Anne Cornelis and Fenner, Daniel and Mar, Kathleen A. and Butler, Tim M.}, title = {Air quality modelling in the Berlin-Brandenburg region using WRF-Chem v3.7.1}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {531}, issn = {1866-8372}, doi = {10.25932/publishup-41013}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410131}, pages = {25}, year = {2016}, abstract = {Air pollution is the number one environmental cause of premature deaths in Europe. Despite extensive regulations, air pollution remains a challenge, especially in urban areas. For studying summertime air quality in the Berlin-Brandenburg region of Germany, the Weather Research and Forecasting Model with Chemistry (WRF-Chem) is set up and evaluated against meteorological and air quality observations from monitoring stations as well as from a field campaign conducted in 2014. The objective is to assess which resolution and level of detail in the input data is needed for simulating urban background air pollutant concentrations and their spatial distribution in the Berlin-Brandenburg area. The model setup includes three nested domains with horizontal resolutions of 15, 3 and 1 km and anthropogenic emissions from the TNO-MACC III inventory. We use RADM2 chemistry and the MADE/SORGAM aerosol scheme. Three sensitivity simulations are conducted updating input parameters to the single-layer urban canopy model based on structural data for Berlin, specifying land use classes on a sub-grid scale (mosaic option) and downscaling the original emissions to a resolution of ca. 1 km x 1 km for Berlin based on proxy data including traffic density and population density. The results show that the model simulates meteorology well, though urban 2m temperature and urban wind speeds are biased high and nighttime mixing layer height is biased low in the base run with the settings described above. We show that the simulation of urban meteorology can be improved when specifying the input parameters to the urban model, and to a lesser extent when using the mosaic option. On average, ozone is simulated reasonably well, but maximum daily 8 h mean concentrations are underestimated, which is consistent with the results from previous modelling studies using the RADM2 chemical mechanism. Particulate matter is underestimated, which is partly due to an underestimation of secondary organic aerosols. NOx (NO + NO2) concentrations are simulated reasonably well on average, but nighttime concentrations are overestimated due to the model's underestimation of the mixing layer height, and urban daytime concentrations are underestimated. The daytime underestimation is improved when using downscaled, and thus locally higher emissions, suggesting that part of this bias is due to deficiencies in the emission input data and their resolution. The results further demonstrate that a horizontal resolution of 3 km improves the results and spatial representativeness of the model compared to a horizontal resolution of 15 km. With the input data (land use classes, emissions) at the level of detail of the base run of this study, we find that a horizontal resolution of 1 km does not improve the results compared to a resolution of 3 km. However, our results suggest that a 1 km horizontal model resolution could enable a detailed simulation of local pollution patterns in the Berlin-Brandenburg region if the urban land use classes, together with the respective input parameters to the urban canopy model, are specified with a higher level of detail and if urban emissions of higher spatial resolution are used.}, language = {en} } @misc{AndersenEgholmFaurschouKnudsenetal.2015, author = {Andersen, Jane Lund and Egholm, David L. and Faurschou Knudsen, Mads and Jansen, John D. and Nielsen, S. B.}, title = {The periglacial engine of mountain erosion}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {530}, issn = {1866-8372}, doi = {10.25932/publishup-40965}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409656}, pages = {16}, year = {2015}, abstract = {With accelerating climate cooling in the late Cenozoic, glacial and periglacial erosion became more widespread on the surface of the Earth. The resultant shift in erosion patterns significantly changed the large-scale morphology of many mountain ranges worldwide. Whereas the glacial fingerprint is easily distinguished by its characteristic fjords and U-shaped valleys, the periglacial fingerprint is more subtle but potentially prevails in some mid- to high-latitude landscapes. Previous models have advocated a frost-driven control on debris production at steep headwalls and glacial valley sides. Here we investigate the important role that periglacial processes also play in less steep parts of mountain landscapes. Understanding the influences of frost-driven processes in low-relief areas requires a focus on the consequences of an accreting soil mantle, which characterises such surfaces. We present a new model that quantifies two key physical processes: frost cracking and frost creep, as a function of both temperature and sediment thickness. Our results yield new insights into how climate and sediment transport properties combine to scale the intensity of periglacial processes. The thickness of the soil mantle strongly modulates the relation between climate and the intensity of mechanical weathering and sediment flux. Our results also point to an offset between the conditions that promote frost cracking and those that promote frost creep, indicating that a stable climate can provide optimal conditions for only one of those processes at a time. Finally, quantifying these relations also opens up the possibility of including periglacial processes in large-scale, long-term landscape evolution models, as demonstrated in a companion paper.}, language = {en} } @misc{LevermannWinkelmann2016, author = {Levermann, Anders and Winkelmann, Ricarda}, title = {A simple equation for the melt elevation feedback of ice sheets}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {529}, issn = {1866-8372}, doi = {10.25932/publishup-40983}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409834}, pages = {9}, year = {2016}, abstract = {In recent decades, the Greenland Ice Sheet has been losing mass and has thereby contributed to global sea-level rise. The rate of ice loss is highly relevant for coastal protection worldwide. The ice loss is likely to increase under future warming. Beyond a critical temperature threshold, a meltdown of the Greenland Ice Sheet is induced by the self-enforcing feedback between its lowering surface elevation and its increasing surface mass loss: the more ice that is lost, the lower the ice surface and the warmer the surface air temperature, which fosters further melting and ice loss. The computation of this rate so far relies on complex numerical models which are the appropriate tools for capturing the complexity of the problem. By contrast we aim here at gaining a conceptual understanding by deriving a purposefully simple equation for the self-enforcing feedback which is then used to estimate the melt time for different levels of warming using three observable characteristics of the ice sheet itself and its surroundings. The analysis is purely conceptual in nature. It is missing important processes like ice dynamics for it to be useful for applications to sea-level rise on centennial timescales, but if the volume loss is dominated by the feedback, the resulting logarithmic equation unifies existing numerical simulations and shows that the melt time depends strongly on the level of warming with a critical slow-down near the threshold: the median time to lose 10\% of the present-day ice volume varies between about 3500 years for a temperature level of 0.5 degrees C above the threshold and 500 years for 5 degrees C. Unless future observations show a significantly higher melting sensitivity than currently observed, a complete meltdown is unlikely within the next 2000 years without significant ice-dynamical contributions.}, language = {en} } @article{FolkertsmaWestburyEccardetal.2018, author = {Folkertsma, Remco and Westbury, Michael V. and Eccard, Jana and Hofreiter, Michael}, title = {The complete mitochondrial genome of the common vole, Microtus arvalis (Rodentia: Arvicolinae)}, series = {Mitochondrial DNA Part B}, volume = {3}, journal = {Mitochondrial DNA Part B}, number = {1}, issn = {2380-2359}, doi = {10.1080/23802359.2018.1457994}, pages = {446 -- 447}, year = {2018}, abstract = {The common vole, Microtus arvalis belongs to the genus Microtus in the subfamily Arvicolinae. In this study, the complete mitochondrial genome of M. arvalis was recovered using shotgun sequencing and an iterative mapping approach using three related species. Phylogenetic analyses using the sequence of 21 arvicoline species place the common vole as a sister species to the East European vole (Microtus levis), but as opposed to previous results we find no support for the recognition of the genus Neodon within the subfamily Arvicolinae, as this is, as well as the genus Lasiopodomys, found within the Microtus genus.}, language = {en} } @misc{LangerwischWalzRammigetal.2016, author = {Langerwisch, F. and Walz, Ariane and Rammig, A. and Tietjen, B. and Thonicke, Kirsten and Cramer, Wolfgang}, title = {Climate change increases riverine carbon outgassing, while export to the ocean remains uncertain}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {526}, issn = {1866-8372}, doi = {10.25932/publishup-41017}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410177}, pages = {24}, year = {2016}, abstract = {Any regular interaction of land and river during flooding affects carbon pools within the terrestrial system, riverine carbon and carbon exported from the system. In the Amazon basin carbon fluxes are considerably influenced by annual flooding, during which terrigenous organic material is imported to the river. The Amazon basin therefore represents an excellent example of a tightly coupled terrestrial-riverine system. The processes of generation, conversion and transport of organic carbon in such a coupled terrigenous-riverine system strongly interact and are climate-sensitive, yet their functioning is rarely considered in Earth system models and their response to climate change is still largely unknown. To quantify regional and global carbon budgets and climate change effects on carbon pools and carbon fluxes, it is important to account for the coupling between the land, the river, the ocean and the atmosphere. We developed the RIVerine Carbon Model (RivCM), which is directly coupled to the well-established dynamic vegetation and hydrology model LPJmL, in order to account for this large-scale coupling. We evaluate RivCM with observational data and show that some of the values are reproduced quite well by the model, while we see large deviations for other variables. This is mainly caused by some simplifications we assumed. Our evaluation shows that it is possible to reproduce large-scale carbon transport across a river system but that this involves large uncertainties. Acknowledging these uncertainties, we estimate the potential changes in riverine carbon by applying RivCM for climate forcing from five climate models and three CO2 emission scenarios (Special Report on Emissions Scenarios, SRES). We find that climate change causes a doubling of riverine organic carbon in the southern and western basin while reducing it by 20\% in the eastern and northern parts. In contrast, the amount of riverine inorganic carbon shows a 2- to 3-fold increase in the entire basin, independent of the SRES scenario. The export of carbon to the atmosphere increases as well, with an average of about 30 \%. In contrast, changes in future export of organic carbon to the Atlantic Ocean depend on the SRES scenario and are projected to either decrease by about 8.9\% (SRES A1B) or increase by about 9.1\% (SRES A2). Such changes in the terrigenous-riverine system could have local and regional impacts on the carbon budget of the whole Amazon basin and parts of the Atlantic Ocean. Changes in riverine carbon could lead to a shift in the riverine nutrient supply and pH, while changes in the exported carbon to the ocean lead to changes in the supply of organic material that acts as a food source in the Atlantic. On larger scales the increased outgassing of CO2 could turn the Amazon basin from a sink of carbon to a considerable source. Therefore, we propose that the coupling of terrestrial and riverine carbon budgets should be included in subsequent analysis of the future regional carbon budget.}, language = {en} } @misc{MeyerSchwanghartKorupetal.2015, author = {Meyer, Nele Kristin and Schwanghart, Wolfgang and Korup, Oliver and Nadim, F.}, title = {Roads at risk}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {519}, issn = {1866-8372}, doi = {10.25932/publishup-40958}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409586}, pages = {11}, year = {2015}, abstract = {Globalisation and interregional exchange of people, goods, and services has boosted the importance of and reliance on all kinds of transport networks. The linear structure of road networks is especially sensitive to natural hazards. In southern Norway, steep topography and extreme weather events promote frequent traffic disruption caused by debris flows. Topographic susceptibility and trigger frequency maps serve as input into a hazard appraisal at the scale of first-order catchments to quantify the impact of debris flows on the road network in terms of a failure likelihood of each link connecting two network vertices, e.g. road junctions. We compute total additional traffic loads as a function of traffic volume and excess distance, i.e. the extra length of an alternative path connecting two previously disrupted network vertices using a shortest-path algorithm. Our risk metric of link failure is the total additional annual traffic load, expressed as vehicle kilometres, because of debris-flow-related road closures. We present two scenarios demonstrating the impact of debris flows on the road network and quantify the associated path-failure likelihood between major cities in southern Norway. The scenarios indicate that major routes crossing the central and north-western part of the study area are associated with high link-failure risk. Yet options for detours on major routes are manifold and incur only little additional costs provided that drivers are sufficiently well informed about road closures. Our risk estimates may be of importance to road network managers and transport companies relying on speedy delivery of services and goods.}, language = {en} } @misc{RiedelsbergerDreyerGonzalez2015, author = {Riedelsberger, Janin and Dreyer, Ingo and Gonzalez, Wendy}, title = {Outward rectification of voltage-gated K+ channels evolved at least twice in life history}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {521}, issn = {1866-8372}, doi = {10.25932/publishup-40959}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409594}, pages = {17}, year = {2015}, abstract = {Voltage-gated potassium (K+) channels are present in all living systems. Despite high structural similarities in the transmembrane domains (TMD), this K+ channel type segregates into at least two main functional categories-hyperpolarization-activated, inward-rectifying (Kin) and depolarization-activated, outward-rectifying (Kout) channels. Voltage-gated K+ channels sense the membrane voltage via a voltage-sensing domain that is connected to the conduction pathway of the channel. It has been shown that the voltage-sensing mechanism is the same in Kin and Kout channels, but its performance results in opposite pore conformations. It is not known how the different coupling of voltage-sensor and pore is implemented. Here, we studied sequence and structural data of voltage-gated K+ channels from animals and plants with emphasis on the property of opposite rectification. We identified structural hotspots that alone allow already the distinction between Kin and Kout channels. Among them is a loop between TMD S5 and the pore that is very short in animal Kout, longer in plant and animal Kin and the longest in plant Kout channels. In combination with further structural and phylogenetic analyses this finding suggests that outward-rectification evolved twice and independently in the animal and plant kingdom.}, language = {en} } @misc{HergertHeidbachReiteretal.2015, author = {Hergert, T. and Heidbach, Oliver and Reiter, Karsten and Giger, S. B. and Marschall, P.}, title = {Stress field sensitivity analysis in a sedimentary sequence of the Alpine foreland, northern Switzerland}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {522}, issn = {1866-8372}, doi = {10.25932/publishup-40960}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409600}, pages = {20}, year = {2015}, abstract = {The stress field at depth is a relevant parameter for the design of subsurface constructions and reservoir management. Yet the distortion of the regional stress field due to local-scale features such as sedimentary and tectonic structures or topography is often poorly constrained. We conduct a stress sensitivity analysis using 3-D numerical geomechanical modelling with an elasto-plastic material law to explore the impact of such site-specific features on the stress field in a sedimentary sequence of the Swiss Alpine foreland. The model's dimensions are 14 x 14 x 3 km(3) and it contains 10 units with different mechanical properties, intersected by two regional fault zones. An initial stress state is established involving a semi-empirical relationship between the ratio of horizontal to vertical stress and the overconsolidation ratio of argillaceous sediments. The model results indicate that local topography can affect the stress field significantly to depths greater than the relief contrasts at the surface, especially in conjunction with horizontal tectonic loading. The complexity and frictional properties of faults are also relevant. The greatest variability of the stress field arises across the different sedimentary units. Stress magnitudes and stress anisotropy are much larger in stiffer formations such as massive limestones than in softer argillaceous formations. The stiffer formations essentially carry the load of the far-field forces and are therefore more sensitive to changes of the boundary conditions. This general characteristic of stress distribution in the stiff and soft formations is broadly maintained also with progressive loading towards the plastic limit. The stress field in argillaceous sediments within a stack of formations with strongly contrasting mechanical properties like in the Alpine foreland appears to be relatively insensitive to changes in the tectonic boundary conditions and is largely controlled by the maximum stiffness contrast with respect to the load-bearing formations.}, language = {en} } @misc{HessSaffertLiebetonetal.2015, author = {Hess, Anne-Katrin and Saffert, Paul and Liebeton, Klaus and Ignatova, Zoya}, title = {Optimization of translation profiles enhances protein expression and solubility}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {518}, issn = {1866-8372}, doi = {10.25932/publishup-40957}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409574}, pages = {14}, year = {2015}, abstract = {mRNA is translated with a non-uniform speed that actively coordinates co-translational folding of protein domains. Using structure-based homology we identified the structural domains in epoxide hydrolases (EHs) and introduced slow-translating codons to delineate the translation of single domains. These changes in translation speed dramatically improved the solubility of two EHs of metagenomic origin in Escherichia coli. Conversely, the importance of transient attenuation for the folding, and consequently solubility, of EH was evidenced with a member of the EH family from Agrobacterium radiobacter, which partitions in the soluble fraction when expressed in E. coli. Synonymous substitutions of codons shaping the slow-transiting regions to fast-translating codons render this protein insoluble. Furthermore, we show that low protein yield can be enhanced by decreasing the free folding energy of the initial 5'-coding region, which can disrupt mRNA secondary structure and enhance ribosomal loading. This study provides direct experimental evidence that mRNA is not a mere messenger for translation of codons into amino acids but bears an additional layer of information for folding, solubility and expression level of the encoded protein. Furthermore, it provides a general frame on how to modulate and fine-tune gene expression of a target protein.}, language = {en} } @misc{SiddiquiLuehrStolleetal.2015, author = {Siddiqui, Tarique Adnan and L{\"u}hr, H. and Stolle, Claudia and Park, J.}, title = {Relation between stratospheric sudden warming and the lunar effect on the equatorial electrojet based on Huancayo recordings}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {517}, issn = {1866-8372}, doi = {10.25932/publishup-40956}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409564}, pages = {9}, year = {2015}, abstract = {It has been known for many decades that the lunar tidal influence in the equatorial electrojet (EEJ) is noticeably enhanced during Northern Hemisphere winters. Recent literature has discussed the role of stratospheric sudden warming (SSW) events behind the enhancement of lunar tides and the findings suggest a positive correlation between the lunar tidal amplitude and lower stratospheric parameters (zonal mean air temperature and zonal mean zonal wind) during SSW events. The positive correlation raises the question whether an inverse approach could also be developed which makes it possible to deduce the occurrence of SSW events before their direct observations (before 1952) from the amplitude of the lunar tides. This study presents an analysis technique based on the phase of the semi-monthly lunar tide to determine the lunar tidal modulation of the EEJ. A statistical approach using the superposed epoch analysis is also carried out to formulate a relation between the EEJ tidal amplitude and lower stratospheric parameters. Using these results, we have estimated a threshold value for the tidal wave power that could be used to identify years with SSW events from magnetic field observations.}, language = {en} } @misc{PinhasiFernandesSiraketal.2015, author = {Pinhasi, Ron and Fernandes, Daniel and Sirak, Kendra and Novak, Mario and Connell, Sarah and Alpaslan-Roodenberg, Song{\"u}l and Gerritsen, Fokke and Moiseyev, Vyacheslav and Gromov, Andrey and Raczky, P{\´a}l and Anders, Alexandra and Pietrusewsky, Michael and Rollefson, Gary and Jovanovic, Marija and Trinhhoang, Hiep and Bar-Oz, Guy and Oxenham, Marc and Matsumura, Hirofumi and Hofreiter, Michael}, title = {Optimal ancient DNA yields from the inner ear part of the human petrous bone}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschafliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschafliche Reihe}, number = {515}, issn = {1866-8372}, doi = {10.25932/publishup-40955}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409557}, pages = {13}, year = {2015}, abstract = {The invention and development of next or second generation sequencing methods has resulted in a dramatic transformation of ancient DNA research and allowed shotgun sequencing of entire genomes from fossil specimens. However, although there are exceptions, most fossil specimens contain only low (similar to 1\% or less) percentages of endogenous DNA. The only skeletal element for which a systematically higher endogenous DNA content compared to other skeletal elements has been shown is the petrous part of the temporal bone. In this study we investigate whether (a) different parts of the petrous bone of archaeological human specimens give different percentages of endogenous DNA yields, (b) there are significant differences in average DNA read lengths, damage patterns and total DNA concentration, and (c) it is possible to obtain endogenous ancient DNA from petrous bones from hot environments. We carried out intra-petrous comparisons for ten petrous bones from specimens from Holocene archaeological contexts across Eurasia dated between 10,0001,800 calibrated years before present (cal. BP). We obtained shotgun DNA sequences from three distinct areas within the petrous: a spongy part of trabecular bone (part A), the dense part of cortical bone encircling the osseous inner ear, or otic capsule (part B), and the dense part within the otic capsule (part C). Our results confirm that dense bone parts of the petrous bone can provide high endogenous aDNA yields and indicate that endogenous DNA fractions for part C can exceed those obtained for part B by up to 65-fold and those from part A by up to 177-fold, while total endogenous DNA concentrations are up to 126-fold and 109-fold higher for these comparisons. Our results also show that while endogenous yields from part C were lower than 1\% for samples from hot (both arid and humid) parts, the DNA damage patterns indicate that at least some of the reads originate from ancient DNA molecules, potentially enabling ancient DNA analyses of samples from hot regions that are otherwise not amenable to ancient DNA analyses.}, language = {en} } @misc{StraussSchirrmeisterMangelsdorfetal.2015, author = {Strauss, Jens and Schirrmeister, Lutz and Mangelsdorf, Kai and Eichhorn, L. and Wetterich, Sebastian and Herzschuh, Ulrike}, title = {Organic-matter quality of deep permafrost carbon}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {514}, issn = {1866-8372}, doi = {10.25932/publishup-40953}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409534}, pages = {19}, year = {2015}, abstract = {The organic-carbon (OC) pool accumulated in Arctic permafrost (perennially frozen ground) equals the carbon stored in the modern atmosphere. To give an idea of how Yedoma region permafrost could respond under future climatic warming, we conducted a study to quantify the organic-matter quality (here defined as the intrinsic potential to be further transformed, decomposed, and mineralized) of late Pleistocene (Yedoma) and Holocene (thermokarst) deposits on the Buor-Khaya Peninsula, northeast Siberia. The objective of this study was to develop a stratigraphic classified organic-matter quality characterization. For this purpose the degree of organic-matter decomposition was estimated by using a multiproxy approach. We applied sedimentological (grain-size analyses, bulk density, ice content) and geochemical parameters (total OC, stable carbon isotopes (delta C-13),total organic carbon : nitrogen (C / N) ratios) as well as lipid biomarkers (n-alkanes, n-fatty acids, hopanes, triterpenoids, and biomarker indices, i.e., average chain length, carbon preference index (CPI), and higher-plant fatty-acid index (HPFA)). Our results show that the Yedoma and thermokarst organic-matter qualities for further decomposition exhibit no obvious degradation-depth trend. Relatively, the C / N and delta C-13 values and the HPFA index show a significantly better preservation of the organic matter stored in thermokarst deposits compared to Yedoma deposits. The CPI data suggest less degradation of the organic matter from both deposits, with a higher value for Yedoma organic matter. As the interquartile ranges of the proxies mostly over-lap, we interpret this as indicating comparable quality for further decomposition for both kinds of deposits with likely better thermokarst organic-matter quality. Supported by principal component analyses, the sediment parameters and quality proxies of Yedoma and thermokarst deposits could not be unambiguously separated from each other. This revealed that the organic-matter vulnerability is heterogeneous and depends on different decomposition trajectories and the previous decomposition and preservation history. Elucidating this was one of the major new contributions of our multiproxy study. With the addition of biomarker data, it was possible to show that permafrost organic-matter degradation likely occurs via a combination of (uncompleted) degradation cycles or a cascade of degradation steps rather than as a linear function of age or sediment facies. We conclude that the amount of organic matter in the studied sediments is high for mineral soils and of good quality and therefore susceptible to future decomposition. The lack of depth trends shows that permafrost acts like a giant freezer, preserving the constant quality of ancient organic matter. When undecomposed Yedoma organic matter is mobilized via thermokarst processes, the fate of this carbon depends largely on the environmental conditions; the carbon could be preserved in an undecomposed state till refreezing occurs. If modern input has occurred, thermokarst organic matter could be of a better quality for future microbial decomposition than that found in Yedoma deposits.}, language = {en} } @misc{ClasonMairNienowetal.2015, author = {Clason, Caroline C. and Mair, D. W. F. and Nienow, P. W. and Bartholomew, I. D. and Sole, Andrew and Palmer, Steven and Schwanghart, Wolfgang}, title = {Modelling the transfer of supraglacial meltwater to the bed of Leverett Glacier, Southwest Greenland}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {513}, issn = {1866-8372}, doi = {10.25932/publishup-40905}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409053}, pages = {16}, year = {2015}, abstract = {Meltwater delivered to the bed of the Greenland Ice Sheet is a driver of variable ice-motion through changes in effective pressure and enhanced basal lubrication. Ice surface velocities have been shown to respond rapidly both to meltwater production at the surface and to drainage of supraglacial lakes, suggesting efficient transfer of meltwater from the supraglacial to subglacial hydrological systems. Although considerable effort is currently being directed towards improved modelling of the controlling surface and basal processes, modelling the temporal and spatial evolution of the transfer of melt to the bed has received less attention. Here we present the results of spatially distributed modelling for prediction of moulins and lake drainages on the Leverett Glacier in Southwest Greenland. The model is run for the 2009 and 2010 ablation seasons, and for future increased melt scenarios. The temporal pattern of modelled lake drainages are qualitatively comparable with those documented from analyses of repeat satellite imagery. The modelled timings and locations of delivery of meltwater to the bed also match well with observed temporal and spatial patterns of ice surface speed-ups. This is particularly true for the lower catchment (< 1000 m a.s.l.) where both the model and observations indicate that the development of moulins is the main mechanism for the transfer of surface meltwater to the bed. At higher elevations (e.g. 1250-1500 m a.s.l.) the development and drainage of supraglacial lakes becomes increasingly important. At these higher elevations, the delay between modelled melt generation and subsequent delivery of melt to the bed matches the observed delay between the peak air temperatures and subsequent velocity speed-ups, while the instantaneous transfer of melt to the bed in a control simulation does not. Although both moulins and lake drainages are predicted to increase in number for future warmer climate scenarios, the lake drainages play an increasingly important role in both expanding the area over which melt accesses the bed and in enabling a greater proportion of surface melt to reach the bed.}, language = {en} } @misc{SunyerHundechaLawrenceetal.2015, author = {Sunyer, M. A. and Hundecha, Y. and Lawrence, D. and Madsen, H. and Willems, Patrick and Martinkova, M. and Vormoor, Klaus Josef and B{\"u}rger, Gerd and Hanel, Martin and Kriaučiūnienė, J. and Loukas, A. and Osuch, M. and Y{\"u}cel, I.}, title = {Inter-comparison of statistical downscaling methods for projection of extreme precipitation in Europe}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {512}, issn = {1866-8372}, doi = {10.25932/publishup-40892}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408920}, pages = {21}, year = {2015}, abstract = {Information on extreme precipitation for future climate is needed to assess the changes in the frequency and intensity of flooding. The primary source of information in climate change impact studies is climate model projections. However, due to the coarse resolution and biases of these models, they cannot be directly used in hydrological models. Hence, statistical downscaling is necessary to address climate change impacts at the catchment scale. This study compares eight statistical downscaling methods (SDMs) often used in climate change impact studies. Four methods are based on change factors (CFs), three are bias correction (BC) methods, and one is a perfect prognosis method. The eight methods are used to downscale precipitation output from 15 regional climate models (RCMs) from the ENSEMBLES project for 11 catchments in Europe. The overall results point to an increase in extreme precipitation in most catchments in both winter and summer. For individual catchments, the downscaled time series tend to agree on the direction of the change but differ in the magnitude. Differences between the SDMs vary between the catchments and depend on the season analysed. Similarly, general conclusions cannot be drawn regarding the differences between CFs and BC methods. The performance of the BC methods during the control period also depends on the catchment, but in most cases they represent an improvement compared to RCM outputs. Analysis of the variance in the ensemble of RCMs and SDMs indicates that at least 30\% and up to approximately half of the total variance is derived from the SDMs. This study illustrates the large variability in the expected changes in extreme precipitation and highlights the need for considering an ensemble of both SDMs and climate models. Recommendations are provided for the selection of the most suitable SDMs to include in the analysis.}, language = {en} } @misc{FeldmannLevermann2015, author = {Feldmann, Johannes and Levermann, Anders}, title = {Interaction of marine ice-sheet instabilities in two drainage basins}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Universit{\"a}t}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Universit{\"a}t}, number = {511}, issn = {1866-8372}, doi = {10.25932/publishup-40890}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408903}, pages = {15}, year = {2015}, abstract = {The initiation of a marine ice-sheet instability (MISI) is generally discussed from the ocean side of the ice sheet. It has been shown that the reduction in ice-shelf buttressing and softening of the coastal ice can destabilize a marine ice sheet if the bedrock is sloping upward towards the ocean. Using a conceptional flow-line geometry, we investigate the possibility of whether a MISI can be triggered from the direction of the ice divide as opposed to coastal forcing and explore the interaction between connected basins. We find that the initiation of a MISI in one basin can induce a destabilization in the other. The underlying mechanism of basin interaction is based on dynamic thinning and a consecutive motion of the ice divide which induces a thinning in the adjacent basin and a successive initiation of the instability. Our simplified and symmetric topographic setup allows scaling both the geometry and the transition time between both instabilities. We find that the ice profile follows a universal shape that is scaled with the horizontal extent of the ice sheet and that the same exponent of 1/2 applies for the scaling relation between central surface elevation and horizontal extent as in the pure shallow ice approximation (Vialov profile). Altering the central bed elevation, we find that the extent of grounding-line retreat in one basin determines the degree of interaction with the other. Different scenarios of basin interaction are discussed based on our modeling results as well as on a conceptual flux-balance analysis. We conclude that for the three-dimensional case, the possibility of drainage basin interaction on timescales on the order of 1 kyr or larger cannot be excluded and hence needs further investigation.}, language = {en} } @misc{BiskabornLanckmanLantuitetal.2015, author = {Biskaborn, Boris and Lanckman, J.-P. and Lantuit, Hugues and Elger, K. and Streletskiy, Dmitry and Cable, W. L. and Romanovsky, Vladimir E.}, title = {The new database of the Global Terrestrial Network for Permafrost (GTN-P)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {523}, issn = {1866-8372}, doi = {10.25932/publishup-40961}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409612}, pages = {15}, year = {2015}, abstract = {The Global Terrestrial Network for Permafrost (GTN-P) provides the first dynamic database associated with the Thermal State of Permafrost (TSP) and the Circumpolar Active Layer Monitoring (CALM) programs, which extensively collect permafrost temperature and active layer thickness (ALT) data from Arctic, Antarctic and mountain permafrost regions. The purpose of GTN-P is to establish an early warning system for the consequences of climate change in permafrost regions and to provide standardized thermal permafrost data to global models. In this paper we introduce the GTN-P database and perform statistical analysis of the GTN-P metadata to identify and quantify the spatial gaps in the site distribution in relation to climate-effective environmental parameters. We describe the concept and structure of the data management system in regard to user operability, data transfer and data policy. We outline data sources and data processing including quality control strategies based on national correspondents. Assessment of the metadata and data quality reveals 63\% metadata completeness at active layer sites and 50\% metadata completeness for boreholes. Voronoi tessellation analysis on the spatial sample distribution of boreholes and active layer measurement sites quantifies the distribution inhomogeneity and provides a potential method to locate additional permafrost research sites by improving the representativeness of thermal monitoring across areas underlain by permafrost. The depth distribution of the boreholes reveals that 73\% are shallower than 25m and 27\% are deeper, reaching a maximum of 1 km depth. Comparison of the GTN-P site distribution with permafrost zones, soil organic carbon contents and vegetation types exhibits different local to regional monitoring situations, which are illustrated with maps. Preferential slope orientation at the sites most likely causes a bias in the temperature monitoring and should be taken into account when using the data for global models. The distribution of GTN-P sites within zones of projected temperature change show a high representation of areas with smaller expected temperature rise but a lower number of sites within Arctic areas where climate models project extreme temperature increase.}, language = {en} } @misc{SmithBookhagenCannon2015, author = {Smith, Taylor and Bookhagen, Bodo and Cannon, Forest}, title = {Improving semi-automated glacier mapping with a multi-method approach}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {510}, issn = {1866-8372}, doi = {10.25932/publishup-40847}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408471}, pages = {13}, year = {2015}, abstract = {Studies of glaciers generally require precise glacier outlines. Where these are not available, extensive manual digitization in a geographic information system (GIS) must be performed, as current algorithms struggle to delineate glacier areas with debris cover or other irregular spectral profiles. Although several approaches have improved upon spectral band ratio delineation of glacier areas, none have entered wide use due to complexity or computational intensity. In this study, we present and apply a glacier mapping algorithm in Central Asia which delineates both clean glacier ice and debris-covered glacier tongues. The algorithm is built around the unique velocity and topographic characteristics of glaciers and further leverages spectral and spatial relationship data. We found that the algorithm misclassifies between 2 and 10\% of glacier areas, as compared to a similar to 750 glacier control data set, and can reliably classify a given Landsat scene in 3-5 min. The algorithm does not completely solve the difficulties inherent in classifying glacier areas from remotely sensed imagery but does represent a significant improvement over purely spectral-based classification schemes, such as the band ratio of Landsat 7 bands three and five or the normalized difference snow index. The main caveats of the algorithm are (1) classification errors at an individual glacier level, (2) reliance on manual intervention to separate connected glacier areas, and (3) dependence on fidelity of the input Landsat data.}, language = {en} } @misc{FrindteAllgaierGrossartetal.2015, author = {Frindte, Katharina and Allgaier, Martin and Grossart, Hans-Peter and Eckert, Werner}, title = {Microbial response to experimentally controlled redox transitions at the sediment water interface}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {509}, issn = {1866-8372}, doi = {10.25932/publishup-40846}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408464}, pages = {17}, year = {2015}, abstract = {The sediment-water interface of freshwater lakes is characterized by sharp chemical gradients, shaped by the interplay between physical, chemical and microbial processes. As dissolved oxygen is depleted in the uppermost sediment, the availability of alternative electron acceptors, e.g. nitrate and sulfate, becomes the limiting factor. We performed a time series experiment in a mesocosm to simulate the transition from aerobic to anaerobic conditions at the sediment-water interface. Our goal was to identify changes in the microbial activity due to redox transitions induced by successive depletion of available electron acceptors. Monitoring critical hydrochemical parameters in the overlying water in conjunction with a new sampling strategy for sediment bacteria enabled us to correlate redox changes in the water to shifts in the active microbial community and the expression of functional genes representing specific redox-dependent microbial processes. Our results show that during several transitions from oxic-heterotrophic condition to sulfate-reducing condition, nitrate-availability and the on-set of sulfate reduction strongly affected the corresponding functional gene expression. There was evidence of anaerobic methane oxidation with NOx. DGGE analysis revealed redox-related changes in microbial activity and expression of functional genes involved in sulfate and nitrite reduction, whereas methanogenesis and methanotrophy showed only minor changes during redox transitions. The combination of high-frequency chemical measurements and molecular methods provide new insights into the temporal dynamics of the interplay between microbial activity and specific redox transitions at the sediment-water interface.}, language = {en} } @misc{MarcusBochDurkaetal.2015, author = {Marcus, Tamar and Boch, Steffen and Durka, Walter and Gossner, Martin M. and M{\"u}ller, J{\"o}rg and Sch{\"o}ning, Ingo and Weisser, Wolfgang W. and Drees, Claudia and Assmann, Thorsten}, title = {Living in heterogeneous woodlands}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {508}, issn = {1866-8372}, doi = {10.25932/publishup-40845}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408451}, pages = {18}, year = {2015}, abstract = {Abstract Although genetic diversity is one of the key components of biodiversity, its drivers are still not fully understood. While it is known that genetic diversity is affected both by environmental parameters as well as habitat history, these factors are not often tested together. Therefore, we analyzed 14 microsatellite loci in Abax parallelepipedus, a flightless, forest dwelling ground beetle, from 88 plots in two study regions in Germany. We modeled the effects of historical and environmental variables on allelic richness, and found for one of the regions, the Schorfheide-Chorin, a significant effect of the depth of the litter layer, which is a main component of habitat quality, and of the sampling effort, which serves as an inverse proxy for local population size. For the other region, the Schwabische Alb, none of the potential drivers showed a significant effect on allelic richness. We conclude that the genetic diversity in our study species is being driven by current local population sizes via environmental variables and not by historical processes in the studied regions. This is also supported by lack of genetic differentiation between local populations sampled from ancient and from recent woodlands. We suggest that the potential effects of former fragmentation and recolonization processes have been mitigated by the large and stable local populations of Abax parallelepipedus in combination with the proximity of the ancient and recent woodlands in the studied landscapes.}, language = {en} } @misc{AichnerFeakinsLeeetal.2015, author = {Aichner, Bernhard and Feakins, Sarah J. and Lee, J. E. and Herzschuh, Ulrike and Liu, X.}, title = {High-resolution leaf wax carbon and hydrogen isotopic record of the late Holocene paleoclimate in arid Central Asia}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {506}, issn = {1866-8372}, doi = {10.25932/publishup-40844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408442}, pages = {15}, year = {2015}, abstract = {Central Asia is located at the confluence of large-scale atmospheric circulation systems. It is thus likely to be highly susceptible to changes in the dynamics of those systems; however, little is still known about the regional paleoclimate history. Here we present carbon and hydrogen isotopic compositions of n-alkanoic acids from a late Holocene sediment core from Lake Karakuli (eastern Pamir, Xinjiang Province, China). Instrumental evidence and isotopeenabled climate model experiments with the Laboratoire de Meteorologie Dynamique Zoom model version 4 (LMDZ4) demonstrate that delta D values of precipitation in the region are influenced by both temperature and precipitation amount. We find that these parameters are inversely correlated on an annual scale, i.e., the climate has varied between relatively cool and wet and more warm and dry over the last 50 years. Since the isotopic signals of these changes are in the same direction and therefore additive, isotopes in precipitation are sensitive recorders of climatic changes in the region. Additionally, we infer that plants use year-round precipitation (including snowmelt), and thus leaf wax delta D values must also respond to shifts in the proportion of moisture derived from westerly storms during late winter and early spring. Downcore results give evidence for a gradual shift to cooler and wetter climates between 3.5 and 2.5 cal kyr BP, interrupted by a warm and dry episode between 3.0 and 2.7 kyr BP. Further cool and wet episodes occur between 1.9 and 1.5 and between 0.6 and 0.1 kyr BP, the latter coeval with the Little Ice Age. Warm and dry episodes from 2.5 to 1.9 and 1.5 to 0.6 kyr BP coincide with the Roman Warm Period and Medieval Climate Anomaly, respectively. Finally, we find a drying tend in recent decades. Regional comparisons lead us to infer that the strength and position of the westerlies, and wider northern hemispheric climate dynamics, control climatic shifts in arid Central Asia, leading to complex local responses. Our new archive from Lake Karakuli provides a detailed record of the local signatures of these climate transitions in the eastern Pamir.}, language = {en} } @misc{KellermannSchoebelKundelaetal.2015, author = {Kellermann, Patric and Sch{\"o}bel, A. and Kundela, G. and Thieken, Annegret}, title = {Estimating flood damage to railway infrastructure}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {504}, issn = {1866-8372}, doi = {10.25932/publishup-40842}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408429}, pages = {12}, year = {2015}, abstract = {Models for estimating flood losses to infrastructure are rare and their reliability is seldom investigated although infrastructure losses might contribute considerably to the overall flood losses. In this paper, an empirical modelling approach for estimating direct structural flood damage to railway infrastructure and associated financial losses is presented. Via a combination of event data, i.e. photo-documented damage on the Northern Railway in Lower Austria caused by the March River flood in 2006, and simulated flood characteristics, i.e. water levels, flow velocities and combinations thereof, the correlations between physical flood impact parameters and damage occurred to the railway track were investigated and subsequently rendered into a damage model. After calibrating the loss estimation using recorded repair costs of the Austrian Federal Railways, the model was applied to three synthetic scenarios with return periods of 30, 100 and 300 years of March River flooding. Finally, the model results are compared to depth-damage-curve-based approaches for the infrastructure sector obtained from the Rhine Atlas damage model and the Damage Scanner model. The results of this case study indicate a good performance of our two-stage model approach. However, due to a lack of independent event and damage data, the model could not yet be validated. Future research in natural risk should focus on the development of event and damage documentation procedures to overcome this significant hurdle in flood damage modelling.}, language = {en} } @misc{ParkLuehrStolleetal.2015, author = {Park, J. and L{\"u}hr, H. and Stolle, Claudia and Malhotra, G. and Baker, J. B. H. and Buchert, Stephan and Gill, R.}, title = {Estimating along-track plasma drift speed from electron density measurements by the three Swarm satellites}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {503}, issn = {1866-8372}, doi = {10.25932/publishup-40841}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408417}, pages = {7}, year = {2015}, abstract = {Plasma convection in the high-latitude ionosphere provides important information about magnetosphere-ionosphere-thermosphere coupling. In this study we estimate the along-track component of plasma convection within and around the polar cap, using electron density profiles measured by the three Swarm satellites. The velocity values estimated from the two different satellite pairs agree with each other. In both hemispheres the estimated velocity is generally anti-sunward, especially for higher speeds. The obtained velocity is in qualitative agreement with Super Dual Auroral Radar Network data. Our method can supplement currently available instruments for ionospheric plasma velocity measurements, especially in cases where these traditional instruments suffer from their inherent limitations. Also, the method can be generalized to other satellite constellations carrying electron density probes.}, language = {en} } @misc{TedderCarleialGołębiewskaetal.2015, author = {Tedder, Andrew and Carleial, Samuel and Gołębiewska, Martyna and Kappel, Christian and Shimizu, Kentaro K. and Stift, Marc}, title = {Evolution of the selfing syndrome in Arabis alpina (Brassicaceae)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {502}, issn = {1866-8372}, doi = {10.25932/publishup-40840}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408401}, pages = {17}, year = {2015}, abstract = {Introduction The transition from cross-fertilisation (outcrossing) to self-fertilisation (selfing) frequently coincides with changes towards a floral morphology that optimises self-pollination, the selfing syndrome. Population genetic studies have reported the existence of both outcrossing and selfing populations in Arabis alpina (Brassicaceae), which is an emerging model species for studying the molecular basis of perenniality and local adaptation. It is unknown whether its selfing populations have evolved a selfing syndrome. Methods Using macro-photography, microscopy and automated cell counting, we compared floral syndromes (size, herkogamy, pollen and ovule numbers) between three outcrossing populations from the Apuan Alps and three selfing populations from the Western and Central Alps (Maritime Alps and Dolomites). In addition, we genotyped the plants for 12 microsatellite loci to confirm previous measures of diversity and inbreeding coefficients based on allozymes, and performed Bayesian clustering. Results and Discussion Plants from the three selfing populations had markedly smaller flowers, less herkogamy and lower pollen production than plants from the three outcrossing populations, whereas pistil length and ovule number have remained constant. Compared to allozymes, microsatellite variation was higher, but revealed similar patterns of low diversity and high Fis in selfing populations. Bayesian clustering revealed two clusters. The first cluster contained the three outcrossing populations from the Apuan Alps, the second contained the three selfing populations from the Maritime Alps and Dolomites. Conclusion We conclude that in comparison to three outcrossing populations, three populations with high selfing rates are characterised by a flower morphology that is closer to the selfing syndrome. The presence of outcrossing and selfing floral syndromes within a single species will facilitate unravelling the genetic basis of the selfing syndrome, and addressing which selective forces drive its evolution.}, language = {en} } @misc{DubovskayaTangGladyshevetal.2015, author = {Dubovskaya, Olga P. and Tang, Kam W. and Gladyshev, Michail I. and Kirillin, Georgiy and Buseva, Zhanna and Kasprzak, Peter and Tolomeev, Aleksandr P. and Grossart, Hans-Peter}, title = {Estimating in situ zooplankton non-predation mortality in an oligo-mesotrophic lake from sediment trap data}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {501}, issn = {1866-8372}, doi = {10.25932/publishup-40839}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408392}, pages = {17}, year = {2015}, abstract = {Background Mortality is a main driver in zooplankton population biology but it is poorly constrained in models that describe zooplankton population dynamics, food web interactions and nutrient dynamics. Mortality due to non-predation factors is often ignored even though anecdotal evidence of non-predation mass mortality of zooplankton has been reported repeatedly. One way to estimate non-predation mortality rate is to measure the removal rate of carcasses, for which sinking is the primary removal mechanism especially in quiescent shallow water bodies. Objectives and Results We used sediment traps to quantify in situ carcass sinking velocity and non-predation mortality rate on eight consecutive days in 2013 for the cladoceran Bosmina longirostris in the oligo-mesotrophic Lake Stechlin; the outcomes were compared against estimates derived from in vitro carcass sinking velocity measurements and an empirical model correcting in vitro sinking velocity for turbulence resuspension and microbial decomposition of carcasses. Our results show that the latter two approaches produced unrealistically high mortality rates of 0.58-1.04 d(-1), whereas the sediment trap approach, when used properly, yielded a mortality rate estimate of 0.015 d(-1), which is more consistent with concurrent population abundance data and comparable to physiological death rate from the literature. Ecological implications Zooplankton carcasses may be exposed to water column microbes for days before entering the benthos; therefore, non-predation mortality affects not only zooplankton population dynamics but also microbial and benthic food webs. This would be particularly important for carbon and nitrogen cycles in systems where recurring mid-summer decline of zooplankton population due to non-predation mortality is observed.}, language = {en} } @misc{MuenchKipfstuhlFreitagetal.2016, author = {M{\"u}nch, Thomas and Kipfstuhl, Sepp and Freitag, Johannes and Meyer, Hanno and Laepple, Thomas}, title = {Regional climate signal vs. local noise}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {500}, issn = {1866-8372}, doi = {10.25932/publishup-40838}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408385}, pages = {17}, year = {2016}, abstract = {In low-accumulation regions, the reliability of delta O-18-derived temperature signals from ice cores within the Holocene is unclear, primarily due to the small climate changes relative to the intrinsic noise of the isotopic signal. In order to learn about the representativity of single ice cores and to optimise future ice-core-based climate reconstructions, we studied the stable-water isotope composition of firn at Kohnen Station, Dronning Maud Land, Antarctica. Analysing delta O-18 in two 50m long snow trenches allowed us to create an unprecedented, two-dimensional image characterising the isotopic variations from the centimetre to the 100-metre scale. Our results show seasonal layering of the isotopic composition but also high horizontal isotopic variability caused by local stratigraphic noise. Based on the horizontal and vertical structure of the isotopic variations, we derive a statistical noise model which successfully explains the trench data. The model further allows one to determine an upper bound for the reliability of climate reconstructions conducted in our study region at seasonal to annual resolution, depending on the number and the spacing of the cores taken.}, language = {en} } @misc{WilskeEccardZistlSchlingmannetal.2015, author = {Wilske, Burkhard and Eccard, Jana and Zistl-Schlingmann, Marcus and Hohmann, Maximilian and Methler, Annabel and Herde, Antje and Liesenjohann, Thilo and Dannenmann, Michael and Butterbach-Bahl, Klaus and Breuer, Lutz}, title = {Effects of short term bioturbation by common voles on biogeochemical soil variables}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {499}, issn = {1866-8372}, doi = {10.25932/publishup-40837}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408375}, pages = {19}, year = {2015}, abstract = {Bioturbation contributes to soil formation and ecosystem functioning. With respect to the active transport of matter by voles, bioturbation may be considered as a very dynamic process among those shaping soil formation and biogeochemistry. The present study aimed at characterizing and quantifying the effects of bioturbation by voles on soil water relations and carbon and nitrogen stocks. Bioturbation effects were examined based on a field set up in a luvic arenosol comprising of eight 50 x 50 m enclosures with greatly different numbers of common vole (Microtus arvalis L., ca. 35-150 individuals ha(-1) mth(-1)). Eleven key soil variables were analyzed: bulk density, infiltration rate, saturated hydraulic conductivity, water holding capacity, contents of soil organic carbon (SOC) and total nitrogen (N), CO2 emission potential, C/N ratio, the stable isotopic signatures of C-13 and N-15, and pH. The highest vole densities were hypothesized to cause significant changes in some variables within 21 months. Results showed that land history had still a major influence, as eight key variables displayed an additional or sole influence of topography. However, the delta N-15 at depths of 10-20 and 20-30 cm decreased and increased with increasing vole numbers, respectively. Also the CO2 emission potential from soil collected at a depth of 15-30 cm decreased and the C/N ratio at 5-10 cm depth narrowed with increasing vole numbers. These variables indicated the first influence of voles on the respective mineralization processes in some soil layers. Tendencies of vole activity homogenizing SOC and N contents across layers were not significant. The results of the other seven key variables did not confirm significant effects of voles. Thus overall, we found mainly a first response of variables that are indicative for changes in biogeochemical dynamics but not yet of those representing changes in pools.}, language = {en} } @misc{Wickert2016, author = {Wickert, Andrew D.}, title = {Open-source modular solutions for flexural isostasy}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {498}, issn = {1866-8372}, doi = {10.25932/publishup-40836}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408366}, pages = {21}, year = {2016}, abstract = {Isostasy is one of the oldest and most widely applied concepts in the geosciences, but the geoscientific community lacks a coherent, easy-to-use tool to simulate flexure of a realistic (i.e., laterally heterogeneous) lithosphere under an arbitrary set of surface loads. Such a model is needed for studies of mountain building, sedimentary basin formation, glaciation, sea-level change, and other tectonic, geodynamic, and surface processes. Here I present gFlex (for GNU flexure), an open-source model that can produce analytical and finite difference solutions for lithospheric flexure in one (profile) and two (map view) dimensions. To simulate the flexural isostatic response to an imposed load, it can be used by itself or within GRASS GIS for better integration with field data. gFlex is also a component with the Community Surface Dynamics Modeling System (CSDMS) and Landlab modeling frameworks for coupling with a wide range of Earth-surface-related models, and can be coupled to additional models within Python scripts. As an example of this in-script coupling, I simulate the effects of spatially variable lithospheric thickness on a modeled Iceland ice cap. Finite difference solutions in gFlex can use any of five types of boundary conditions: 0-displacement, 0-slope (i.e., clamped); 0-slope, 0-shear; 0-moment, 0-shear (i.e., broken plate); mirror symmetry; and periodic. Typical calculations with gFlex require << 1 s to similar to 1 min on a personal laptop computer. These characteristics - multiple ways to run the model, multiple solution methods, multiple boundary conditions, and short compute time - make gFlex an effective tool for flexural isostatic modeling across the geosciences.}, language = {en} } @misc{SiegmundWiedermannDongesetal.2016, author = {Siegmund, Jonatan Frederik and Wiedermann, Marc and Donges, Jonathan and Donner, Reik Volker}, title = {Impact of temperature and precipitation extremes on the flowering dates of four German wildlife shrub species}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {497}, issn = {1866-8372}, doi = {10.25932/publishup-40835}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408352}, pages = {15}, year = {2016}, abstract = {Ongoing climate change is known to cause an increase in the frequency and amplitude of local temperature and precipitation extremes in many regions of the Earth. While gradual changes in the climatological conditions have already been shown to strongly influence plant flowering dates, the question arises if and how extremes specifically impact the timing of this important phenological phase. Studying this question calls for the application of statistical methods that are tailored to the specific properties of event time series. Here, we employ event coincidence analysis, a novel statistical tool that allows assessing whether or not two types of events exhibit similar sequences of occurrences in order to systematically quantify simultaneities between meteorological extremes and the timing of the flowering of four shrub species across Germany. Our study confirms previous findings of experimental studies by highlighting the impact of early spring temperatures on the flowering of the investigated plants. However, previous studies solely based on correlation analysis do not allow deriving explicit estimates of the strength of such interdependencies without further assumptions, a gap that is closed by our analysis. In addition to direct impacts of extremely warm and cold spring temperatures, our analysis reveals statistically significant indications of an influence of temperature extremes in the autumn preceding the flowering.}, language = {en} } @misc{BurneckiWylomanskaChechkin2015, author = {Burnecki, Krzysztof and Wylomanska, Agnieszka and Chechkin, Aleksei V.}, title = {Discriminating between light- and heavy-tailed distributions with limit theorem}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {495}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408172}, pages = {23}, year = {2015}, abstract = {In this paper we propose an algorithm to distinguish between light- and heavy-tailed probability laws underlying random datasets. The idea of the algorithm, which is visual and easy to implement, is to check whether the underlying law belongs to the domain of attraction of the Gaussian or non-Gaussian stable distribution by examining its rate of convergence. The method allows to discriminate between stable and various non-stable distributions. The test allows to differentiate between distributions, which appear the same according to standard Kolmogorov-Smirnov test. In particular, it helps to distinguish between stable and Student's t probability laws as well as between the stable and tempered stable, the cases which are considered in the literature as very cumbersome. Finally, we illustrate the procedure on plasma data to identify cases with so-called L-H transition.}, language = {en} } @misc{MurawskiBuergerVorogushynetal.2016, author = {Murawski, Aline and B{\"u}rger, Gerd and Vorogushyn, Sergiy and Merz, Bruno}, title = {Can local climate variability be explained by weather patterns?}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {525}, issn = {1866-8372}, doi = {10.25932/publishup-41015}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410155}, pages = {24}, year = {2016}, abstract = {To understand past flood changes in the Rhine catchment and in particular the role of anthropogenic climate change in extreme flows, an attribution study relying on a proper GCM (general circulation model) downscaling is needed. A downscaling based on conditioning a stochastic weather generator on weather patterns is a promising approach. This approach assumes a strong link between weather patterns and local climate, and sufficient GCM skill in reproducing weather pattern climatology. These presuppositions are unprecedentedly evaluated here using 111 years of daily climate data from 490 stations in the Rhine basin and comprehensively testing the number of classification parameters and GCM weather pattern characteristics. A classification based on a combination of mean sea level pressure, temperature, and humidity from the ERA20C reanalysis of atmospheric fields over central Europe with 40 weather types was found to be the most appropriate for stratifying six local climate variables. The corresponding skill is quite diverse though, ranging from good for radiation to poor for precipitation. Especially for the latter it was apparent that pressure fields alone cannot sufficiently stratify local variability. To test the skill of the latest generation of GCMs from the CMIP5 ensemble in reproducing the frequency, seasonality, and persistence of the derived weather patterns, output from 15 GCMs is evaluated. Most GCMs are able to capture these characteristics well, but some models showed consistent deviations in all three evaluation criteria and should be excluded from further attribution analysis.}, language = {en} } @misc{MysiakSurminskiThiekenetal.2016, author = {Mysiak, Jaroslav and Surminski, Swenja and Thieken, Annegret and Mechler, Reinhard and Aerts, Jeroen C. J. H.}, title = {Brief communication}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {524}, issn = {1866-8372}, doi = {10.25932/publishup-41014}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410149}, pages = {5}, year = {2016}, abstract = {In March 2015, a new international blueprint for disaster risk reduction (DRR) was adopted in Sendai, Japan, at the end of the Third UN World Conference on Disaster Risk Reduction (WCDRR, 14-18 March 2015). We review and discuss the agreed commitments and targets, as well as the negotiation leading the Sendai Framework for DRR (SF-DRR) and discuss briefly its implication for the later UN-led negotiations on sustainable development goals and climate change.}, language = {en} } @misc{SonnemannPfestorfJeltschetal.2015, author = {Sonnemann, Ilja and Pfestorf, Hans and Jeltsch, Florian and Wurst, Susanne}, title = {Community- weighted mean plant traits predict small scale distribution of insect root herbivore abundance}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {494}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408161}, pages = {14}, year = {2015}, abstract = {Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43\%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive-and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root herbivores with large, fast growing plants may counteract dominance of those species, thus promoting plant diversity.}, language = {en} } @misc{FritzOpelTanskietal.2015, author = {Fritz, Michael and Opel, Thomas and Tanski, George and Herzschuh, Ulrike and Meyer, Hanno and Eulenburg, A. and Lantuit, Hugues}, title = {Dissolved organic carbon (DOC) in Arctic ground ice}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {493}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408155}, pages = {16}, year = {2015}, abstract = {Thermal permafrost degradation and coastal erosion in the Arctic remobilize substantial amounts of organic carbon (OC) and nutrients which have accumulated in late Pleistocene and Holocene unconsolidated deposits. Permafrost vulnerability to thaw subsidence, collapsing coastlines and irreversible landscape change are largely due to the presence of large amounts of massive ground ice such as ice wedges. However, ground ice has not, until now, been considered to be a source of dissolved organic carbon (DOC), dissolved inorganic carbon (DIC) and other elements which are important for ecosystems and carbon cycling. Here we show, using biogeochemical data from a large number of different ice bodies throughout the Arctic, that ice wedges have the greatest potential for DOC storage, with a maximum of 28.6 mg L-1 (mean: 9.6 mg L-1). Variation in DOC concentration is positively correlated with and explained by the concentrations and relative amounts of typically terrestrial cations such as Mg2+ and K+. DOC sequestration into ground ice was more effective during the late Pleistocene than during the Holocene, which can be explained by rapid sediment and OC accumulation, the prevalence of more easily degradable vegetation and immediate incorporation into permafrost. We assume that pristine snowmelt is able to leach considerable amounts of well-preserved and highly bioavailable DOC as well as other elements from surface sediments, which are rapidly frozen and stored in ground ice, especially in ice wedges, even before further degradation. We found that ice wedges in the Yedoma region represent a significant DOC (45.2 Tg) and DIC (33.6 Tg) pool in permafrost areas and a freshwater reservoir of 4200 km(2). This study underlines the need to discriminate between particulate OC and DOC to assess the availability and vulnerability of the permafrost car-bon pool for ecosystems and climate feedback upon mobilization.}, language = {en} } @misc{PrahlRybskiBurghoffetal.2015, author = {Prahl, Boris F. and Rybski, Diego and Burghoff, Olaf and Kropp, J{\"u}rgen}, title = {Comparison of storm damage functions and their performance}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {492}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408119}, pages = {20}, year = {2015}, abstract = {Winter storms are the most costly natural hazard for European residential property. We compare four distinct storm damage functions with respect to their forecast accuracy and variability, with particular regard to the most severe winter storms. The analysis focuses on daily loss estimates under differing spatial aggregation, ranging from district to country level. We discuss the broad and heavily skewed distribution of insured losses posing difficulties for both the calibration and the evaluation of damage functions. From theoretical considerations, we provide a synthesis between the frequently discussed cubic wind-damage relationship and recent studies that report much steeper damage functions for European winter storms. The performance of the storm loss models is evaluated for two sources of wind gust data, direct observations by the German Weather Service and ERA-Interim reanalysis data. While the choice of gust data has little impact on the evaluation of German storm loss, spatially resolved coefficients of variation reveal dependence between model and data choice. The comparison shows that the probabilistic models by Heneka et al. (2006) and Prahl et al. (2012) both provide accurate loss predictions for moderate to extreme losses, with generally small coefficients of variation. We favour the latter model in terms of model applicability. Application of the versatile deterministic model by Klawa and Ulbrich (2003) should be restricted to extreme loss, for which it shows the least bias and errors comparable to the probabilistic model by Prahl et al. (2012).}, language = {en} } @misc{FritzDeshpandeBouchardetal.2015, author = {Fritz, Michael and Deshpande, B. N. and Bouchard, F. and H{\"o}gstr{\"o}m, E. and Malenfant-Lepage, J. and Morgenstern, Anne and Nieuwendam, A. and Oliva, M. and Paquette, M. and Rudy, A. C. A. and Siewert, M. B. and Sj{\"o}berg, Y. and Weege, Stefanie}, title = {Brief communication}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {490}, issn = {1866-8372}, doi = {10.25932/publishup-40809}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408096}, pages = {6}, year = {2015}, abstract = {Accelerating climate change and increased economic and environmental interests in permafrost-affected regions have resulted in an acute need for more directed permafrost research. In June 2014, 88 early career researchers convened to identify future priorities for permafrost research. This multidisciplinary forum concluded that five research topics deserve greatest attention: permafrost landscape dynamics, permafrost thermal modeling, integration of traditional knowledge, spatial distribution of ground ice, and engineering issues. These topics underline the need for integrated research across a spectrum of permafrost-related domains and constitute a contribution to the Third International Conference on Arctic Research Planning (ICARP III).}, language = {en} } @misc{PohlHoffmannHagemannetal.2015, author = {Pohl, Madlen and Hoffmann, M. and Hagemann, Ulrike and Giebels, M. and Albiac Borraz, E. and Sommer, Michael and Augustin, J{\"u}rgen}, title = {Dynamic C and N stocks}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {496}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408184}, pages = {16}, year = {2015}, abstract = {The drainage and cultivation of fen peatlands create complex small-scale mosaics of soils with extremely variable soil organic carbon (SOC) stocks and groundwater levels (GWLs). To date, the significance of such sites as sources or sinks for greenhouse gases such as CO2 and CH4 is still unclear, especially if the sites are used for cropland. As individual control factors such as GWL fail to account for this complexity, holistic approaches combining gas fluxes with the underlying processes are required to understand the carbon (C) gas exchange of drained fens. It can be assumed that the stocks of SOC and N located above the variable GWL - defined as dynamic C and N stocks - play a key role in the regulation of the plant- and microbially mediated CO2 fluxes in these soils and, inversely, for CH4. To test this assumption, the present study analysed the C gas exchange (gross primary production - GPP; ecosystem respiration - R-eco; net ecosystem exchange - NEE; CH4) of maize using manual chambers for 4 years. The study sites were located near Paulinenaue, Germany, where we selected three soil types representing the full gradient of GWL and SOC stocks (0-1 m) of the landscape: (a) Haplic Arenosol (AR; 8 kg C m(-2)); (b) Mollic Gleysol (GL; 38 kg C m(-2)); and (c) Hemic Histosol (HS; 87 kg C m(-2)). Daily GWL data were used to calculate dynamic SOC (SOCdyn) and N (N-dyn) stocks. Average annual NEE differed considerably among sites, ranging from 47 +/- 30 g C m(-2) yr(-1) in AR to -305 +/- 123 g C m(-2) yr(-1) in GL and -127 +/- 212 g C m(-2) yr(-1) in HS. While static SOC and N stocks showed no significant effect on C fluxes, SOCdyn and N-dyn and their interaction with GWL strongly influenced the C gas exchange, particularly NEE and the GPP : R-eco ratio. Moreover, based on nonlinear regression analysis, 86\% of NEE variability was explained by GWL and SOCdyn. The observed high relevance of dynamic SOC and N stocks in the aerobic zone for plant and soil gas exchange likely originates from the effects of GWL-dependent N availability on C formation and transformation processes in the plant-soil system, which promote CO2 input via GPP more than CO2 emission via R-eco. The process-oriented approach of dynamic C and N stocks is a promising, potentially generalisable method for system-oriented investigations of the C gas exchange of groundwater-influenced soils and could be expanded to other nutrients and soil characteristics. However, in order to assess the climate impact of arable sites on drained peatlands, it is always necessary to consider the entire range of groundwater-influenced mineral and organic soils and their respective areal extent within the soil landscape.}, language = {en} } @misc{ReegHeineMihanetal.2019, author = {Reeg, Jette and Heine, Simon and Mihan, Christine and McGee, Sean and Preuss, Thomas G. and Jeltsch, Florian}, title = {Simulation of herbicide impacts on a plant community}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {528}, issn = {1866-8372}, doi = {10.25932/publishup-42303}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-423039}, pages = {16}, year = {2019}, abstract = {Background Semi-natural plant communities such as field boundaries play an important ecological role in agricultural landscapes, e.g., provision of refuge for plant and other species, food web support or habitat connectivity. To prevent undesired effects of herbicide applications on these communities and their structure, the registration and application are regulated by risk assessment schemes in many industrialized countries. Standardized individual-level greenhouse experiments are conducted on a selection of crop and wild plant species to characterize the effects of herbicide loads potentially reaching off-field areas on non-target plants. Uncertainties regarding the protectiveness of such approaches to risk assessment might be addressed by assessment factors that are often under discussion. As an alternative approach, plant community models can be used to predict potential effects on plant communities of interest based on extrapolation of the individual-level effects measured in the standardized greenhouse experiments. In this study, we analyzed the reliability and adequacy of the plant community model IBC-grass (individual-based plant community model for grasslands) by comparing model predictions with empirically measured effects at the plant community level. Results We showed that the effects predicted by the model IBC-grass were in accordance with the empirical data. Based on the species-specific dose responses (calculated from empirical effects in monocultures measured 4 weeks after application), the model was able to realistically predict short-term herbicide impacts on communities when compared to empirical data. Conclusion The results presented in this study demonstrate an approach how the current standard greenhouse experiments—measuring herbicide impacts on individual-level—can be coupled with the model IBC-grass to estimate effects on plant community level. In this way, it can be used as a tool in ecological risk assessment.}, language = {en} } @article{ReegHeineMihanetal.2018, author = {Reeg, Jette and Heine, Simon and Mihan, Christine and McGee, Sean and Preuss, Thomas G. and Jeltsch, Florian}, title = {Simulation of herbicide impacts on a plant community}, series = {Environmental Sciences Europe}, volume = {30}, journal = {Environmental Sciences Europe}, number = {44}, publisher = {Springer}, address = {Berlin und Heidelberg}, issn = {2190-4715}, doi = {10.1186/s12302-018-0174-9}, pages = {16}, year = {2018}, abstract = {Background Semi-natural plant communities such as field boundaries play an important ecological role in agricultural landscapes, e.g., provision of refuge for plant and other species, food web support or habitat connectivity. To prevent undesired effects of herbicide applications on these communities and their structure, the registration and application are regulated by risk assessment schemes in many industrialized countries. Standardized individual-level greenhouse experiments are conducted on a selection of crop and wild plant species to characterize the effects of herbicide loads potentially reaching off-field areas on non-target plants. Uncertainties regarding the protectiveness of such approaches to risk assessment might be addressed by assessment factors that are often under discussion. As an alternative approach, plant community models can be used to predict potential effects on plant communities of interest based on extrapolation of the individual-level effects measured in the standardized greenhouse experiments. In this study, we analyzed the reliability and adequacy of the plant community model IBC-grass (individual-based plant community model for grasslands) by comparing model predictions with empirically measured effects at the plant community level. Results We showed that the effects predicted by the model IBC-grass were in accordance with the empirical data. Based on the species-specific dose responses (calculated from empirical effects in monocultures measured 4 weeks after application), the model was able to realistically predict short-term herbicide impacts on communities when compared to empirical data. Conclusion The results presented in this study demonstrate an approach how the current standard greenhouse experiments—measuring herbicide impacts on individual-level—can be coupled with the model IBC-grass to estimate effects on plant community level. In this way, it can be used as a tool in ecological risk assessment.}, language = {en} } @misc{MolinaGarciaSandevSafdarietal.2019, author = {Molina-Garcia, Daniel and Sandev, Trifce and Safdari, Hadiseh and Pagnini, Gianni and Chechkin, Aleksei V. and Metzler, Ralf}, title = {Crossover from anomalous to normal diffusion}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {507}, issn = {1866-8372}, doi = {10.25932/publishup-42259}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422590}, pages = {28}, year = {2019}, abstract = {Abstract The emerging diffusive dynamics in many complex systems show a characteristic crossover behaviour from anomalous to normal diffusion which is otherwise fitted by two independent power-laws. A prominent example for a subdiffusive-diffusive crossover are viscoelastic systems such as lipid bilayer membranes, while superdiffusive-diffusive crossovers occur in systems of actively moving biological cells. We here consider the general dynamics of a stochastic particle driven by so-called tempered fractional Gaussian noise, that is noise with Gaussian amplitude and power-law correlations, which are cut off at some mesoscopic time scale. Concretely we consider such noise with built-in exponential or power-law tempering, driving an overdamped Langevin equation (fractional Brownian motion) and fractional Langevin equation motion. We derive explicit expressions for the mean squared displacement and correlation functions, including different shapes of the crossover behaviour depending on the concrete tempering, and discuss the physical meaning of the tempering. In the case of power-law tempering we also find a crossover behaviour from faster to slower superdiffusion and slower to faster subdiffusion. As a direct application of our model we demonstrate that the obtained dynamics quantitatively describes the subdiffusion-diffusion and subdiffusion-subdiffusion crossover in lipid bilayer systems. We also show that a model of tempered fractional Brownian motion recently proposed by Sabzikar and Meerschaert leads to physically very different behaviour with a seemingly paradoxical ballistic long time scaling.}, language = {en} } @article{MolinaGarciaSandevSafdarietal.2018, author = {Molina-Garcia, Daniel and Sandev, Trifce and Safdari, Hadiseh and Pagnini, Gianni and Chechkin, Aleksei V. and Metzler, Ralf}, title = {Crossover from anomalous to normal diffusion}, series = {New Journal of Physics}, volume = {20}, journal = {New Journal of Physics}, publisher = {IOP Publishing Ltd}, address = {London und Bad Honnef}, issn = {1367-2630}, doi = {10.1088/1367-2630/aae4b2}, pages = {28}, year = {2018}, abstract = {Abstract The emerging diffusive dynamics in many complex systems show a characteristic crossover behaviour from anomalous to normal diffusion which is otherwise fitted by two independent power-laws. A prominent example for a subdiffusive-diffusive crossover are viscoelastic systems such as lipid bilayer membranes, while superdiffusive-diffusive crossovers occur in systems of actively moving biological cells. We here consider the general dynamics of a stochastic particle driven by so-called tempered fractional Gaussian noise, that is noise with Gaussian amplitude and power-law correlations, which are cut off at some mesoscopic time scale. Concretely we consider such noise with built-in exponential or power-law tempering, driving an overdamped Langevin equation (fractional Brownian motion) and fractional Langevin equation motion. We derive explicit expressions for the mean squared displacement and correlation functions, including different shapes of the crossover behaviour depending on the concrete tempering, and discuss the physical meaning of the tempering. In the case of power-law tempering we also find a crossover behaviour from faster to slower superdiffusion and slower to faster subdiffusion. As a direct application of our model we demonstrate that the obtained dynamics quantitatively describes the subdiffusion-diffusion and subdiffusion-subdiffusion crossover in lipid bilayer systems. We also show that a model of tempered fractional Brownian motion recently proposed by Sabzikar and Meerschaert leads to physically very different behaviour with a seemingly paradoxical ballistic long time scaling.}, language = {en} } @misc{RodilJaramilloHubbardetal.2015, author = {Rodil, Iv{\´a}n F. and Jaramillo, Eduardo and Hubbard, David M. and Dugan, Jenifer E. and Melnick, Daniel and Velasquez, Carlos}, title = {Responses of dune plant communities to continental uplift from a major earthquake}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {516}, issn = {1866-8372}, doi = {10.25932/publishup-40962}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409629}, pages = {18}, year = {2015}, abstract = {Vegetated dunes are recognized as important natural barriers that shelter inland ecosystems and coastlines suffering daily erosive impacts of the sea and extreme events, such as tsunamis. However, societal responses to erosion and shoreline retreat often result in man-made coastal defence structures that cover part of the intertidal and upper shore zones causing coastal squeeze and habitat loss, especially for upper shore biota, such as dune plants. Coseismic uplift of up to 2.0 m on the Peninsula de Arauco (South central Chile, ca. 37.5 degrees S) caused by the 2010 Maule earthquake drastically modified the coastal landscape, including major increases in the width of uplifted beaches and the immediate conversion of mid to low sandy intertidal habitat to supralittoral sandy habitat above the reach of average tides and waves. To investigate the early stage responses in species richness, cover and across-shore distribution of the hitherto absent dune plants, we surveyed two formerly intertidal armoured sites and a nearby intertidal unarmoured site on a sandy beach located on the uplifted coast of Llico (Peninsula de Arauco) over two years. Almost 2 years after the 2010 earthquake, dune plants began to recruit, then rapidly grew and produced dune hummocks in the new upper beach habitats created by uplift at the three sites. Initial vegetation responses were very similar among sites. However, over the course of the study, the emerging vegetated dunes of the armoured sites suffered a slowdown in the development of the spatial distribution process, and remained impoverished in species richness and cover compared to the unarmoured site. Our results suggest that when released from the effects of coastal squeeze, vegetated dunes can recover without restoration actions. However, subsequent human activities and management of newly created beach and dune habitats can significantly alter the trajectory of vegetated dune development. Management that integrates the effects of natural and human induced disturbances, and promotes the development of dune vegetation as natural barriers can provide societal and conservation benefits in coastal ecosystems.}, language = {en} } @misc{KienzlerPechKreibichetal.2014, author = {Kienzler, Sarah and Pech, I. and Kreibich, Heidi and M{\"u}ller, M. and Thieken, Annegret}, title = {After the extreme flood in 2002}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {488}, issn = {1866-8372}, doi = {10.25932/publishup-40805}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408056}, pages = {505 -- 526}, year = {2014}, abstract = {In the aftermath of the severe flooding in Central Europe in August 2002, a number of changes in flood policies were launched in Germany and other European countries, aiming at improved risk management. The question arises as to whether these changes have already had an impact on the residents' ability to cope with floods, and whether flood-affected private households are now better prepared than they were in 2002. Therefore, computer-aided telephone interviews with private households in Germany that suffered from property damage due to flooding in 2005, 2006, 2010 or 2011 were performed and analysed with respect to flood awareness, precaution, preparedness and recovery. The data were compared to a similar investigation conducted after the flood in 2002. After the flood in 2002, the level of private precautions taken increased considerably. One contributing factor is the fact that, in general, a larger proportion of people knew that they were at risk of flooding. The best level of precaution was found before the flood events in 2006 and 2011. The main reason for this might be that residents had more experience with flooding than residents affected in 2005 or 2010. Yet, overall, flood experience and knowledge did not necessarily result in building retrofitting or flood-proofing measures, which are considered as mitigating damages most effectively. Hence, investments still need to be stimulated in order to reduce future damage more efficiently. Early warning and emergency responses were substantially influenced by flood characteristics. In contrast to flood-affected people in 2006 or 2011, people affected by flooding in 2005 or 2010 had to deal with shorter lead times and therefore had less time to take emergency measures. Yet, the lower level of emergency measures taken also resulted from the people's lack of flood experience and insufficient knowledge of how to protect themselves. Overall, it was noticeable that these residents suffered from higher losses. Therefore, it is important to further improve early warning systems and communication channels, particularly in hilly areas with rapid-onset flooding.}, language = {en} } @misc{PaijmansBarlowFoersteretal.2019, author = {Paijmans, Johanna L. A. and Barlow, Axel and F{\"o}rster, Daniel W. and Henneberger, Kirstin and Meyer, Matthias and Nickel, Birgit and Nagel, Doris and Wors{\o}e Havm{\o}ller, Rasmus and Baryshnikov, Gennady F. and Joger, Ulrich and Rosendahl, Wilfried and Hofreiter, Michael}, title = {Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {505}, issn = {1866-8372}, doi = {10.25932/publishup-42255}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422555}, pages = {12}, year = {2019}, abstract = {Background Resolving the historical biogeography of the leopard (Panthera pardus) is a complex issue, because patterns inferred from fossils and from molecular data lack congruence. Fossil evidence supports an African origin, and suggests that leopards were already present in Eurasia during the Early Pleistocene. Analysis of DNA sequences however, suggests a more recent, Middle Pleistocene shared ancestry of Asian and African leopards. These contrasting patterns led researchers to propose a two-stage hypothesis of leopard dispersal out of Africa: an initial Early Pleistocene colonisation of Asia and a subsequent replacement by a second colonisation wave during the Middle Pleistocene. The status of Late Pleistocene European leopards within this scenario is unclear: were these populations remnants of the first dispersal, or do the last surviving European leopards share more recent ancestry with their African counterparts? Results In this study, we generate and analyse mitogenome sequences from historical samples that span the entire modern leopard distribution, as well as from Late Pleistocene remains. We find a deep bifurcation between African and Eurasian mitochondrial lineages (~ 710 Ka), with the European ancient samples as sister to all Asian lineages (~ 483 Ka). The modern and historical mainland Asian lineages share a relatively recent common ancestor (~ 122 Ka), and we find one Javan sample nested within these. Conclusions The phylogenetic placement of the ancient European leopard as sister group to Asian leopards suggests that these populations originate from the same out-of-Africa dispersal which founded the Asian lineages. The coalescence time found for the mitochondrial lineages aligns well with the earliest undisputed fossils in Eurasia, and thus encourages a re-evaluation of the identification of the much older putative leopard fossils from the region. The relatively recent ancestry of all mainland Asian leopard lineages suggests that these populations underwent a severe population bottleneck during the Pleistocene. Finally, although only based on a single sample, the unexpected phylogenetic placement of the Javan leopard could be interpreted as evidence for exchange of mitochondrial lineages between Java and mainland Asia, calling for further investigation into the evolutionary history of this subspecies.}, language = {en} } @article{PaijmansBarlowFoersteretal.2018, author = {Paijmans, Johanna L. A. and Barlow, Axel and F{\"o}rster, Daniel W. and Henneberger, Kirstin and Meyer, Matthias and Nickel, Birgit and Nagel, Doris and Wors{\o}e Havm{\o}ller, Rasmus and Baryshnikov, Gennady F. and Joger, Ulrich and Rosendahl, Wilfried and Hofreiter, Michael}, title = {Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations}, series = {BMC Evolutionary Biology}, volume = {18}, journal = {BMC Evolutionary Biology}, number = {156}, publisher = {BioMed Central und Springer}, address = {London, Berlin und Heidelberg}, issn = {1471-2148}, doi = {10.1186/s12862-018-1268-0}, pages = {12}, year = {2018}, abstract = {Background Resolving the historical biogeography of the leopard (Panthera pardus) is a complex issue, because patterns inferred from fossils and from molecular data lack congruence. Fossil evidence supports an African origin, and suggests that leopards were already present in Eurasia during the Early Pleistocene. Analysis of DNA sequences however, suggests a more recent, Middle Pleistocene shared ancestry of Asian and African leopards. These contrasting patterns led researchers to propose a two-stage hypothesis of leopard dispersal out of Africa: an initial Early Pleistocene colonisation of Asia and a subsequent replacement by a second colonisation wave during the Middle Pleistocene. The status of Late Pleistocene European leopards within this scenario is unclear: were these populations remnants of the first dispersal, or do the last surviving European leopards share more recent ancestry with their African counterparts? Results In this study, we generate and analyse mitogenome sequences from historical samples that span the entire modern leopard distribution, as well as from Late Pleistocene remains. We find a deep bifurcation between African and Eurasian mitochondrial lineages (~ 710 Ka), with the European ancient samples as sister to all Asian lineages (~ 483 Ka). The modern and historical mainland Asian lineages share a relatively recent common ancestor (~ 122 Ka), and we find one Javan sample nested within these. Conclusions The phylogenetic placement of the ancient European leopard as sister group to Asian leopards suggests that these populations originate from the same out-of-Africa dispersal which founded the Asian lineages. The coalescence time found for the mitochondrial lineages aligns well with the earliest undisputed fossils in Eurasia, and thus encourages a re-evaluation of the identification of the much older putative leopard fossils from the region. The relatively recent ancestry of all mainland Asian leopard lineages suggests that these populations underwent a severe population bottleneck during the Pleistocene. Finally, although only based on a single sample, the unexpected phylogenetic placement of the Javan leopard could be interpreted as evidence for exchange of mitochondrial lineages between Java and mainland Asia, calling for further investigation into the evolutionary history of this subspecies.}, language = {en} } @misc{PradhanFischerVelthuizenetal.2015, author = {Pradhan, Prajal and Fischer, G{\"u}nther and Velthuizen, Harrij van and Reusser, Dominik Edwin and Kropp, J{\"u}rgen}, title = {Closing yield gaps}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {491}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408105}, pages = {18}, year = {2015}, abstract = {Global food production needs to be increased by 60-110\% between 2005 and 2050 to meet growing food and feed demand. Intensification and/or expansion of agriculture are the two main options available to meet the growing crop demands. Land conversion to expand cultivated land increases GHG emissions and impacts biodiversity and ecosystem services. Closing yield gaps to attain potential yields may be a viable option to increase the global crop production. Traditional methods of agricultural intensification often have negative externalities. Therefore, there is a need to explore location-specific methods of sustainable agricultural intensification. We identified regions where the achievement of potential crop calorie production on currently cultivated land will meet the present and future food demand based on scenario analyses considering population growth and changes in dietary habits. By closing yield gaps in the current irrigated and rain-fed cultivated land, about 24\% and 80\% more crop calories can respectively be produced compared to 2000. Most countries will reach food self-sufficiency or improve their current food self-sufficiency levels if potential crop production levels are achieved. As a novel approach, we defined specific input and agricultural management strategies required to achieve the potential production by overcoming biophysical and socioeconomic constraints causing yield gaps. The management strategies include: fertilizers, pesticides, advanced soil management, land improvement, management strategies coping with weather induced yield variability, and improving market accessibility. Finally, we estimated the required fertilizers (N, P2O5, and K2O) to attain the potential yields. Globally, N-fertilizer application needs to increase by 45-73\%, P2O5-fertilizer by 22-46\%, and K2O-fertilizer by 2-3 times compared to the year 2010 to attain potential crop production. The sustainability of such agricultural intensification largely depends on the way management strategies for closing yield gaps are chosen and implemented.}, language = {en} } @misc{HoffmannKretschmerLawrenzetal.2015, author = {Hoffmann, Linda Sarah and Kretschmer, Axel and Lawrenz, Bettina and Hocher, Berthold and Stasch, Johannes-Peter}, title = {Chronic activation of heme free Guanylate Cyclase leads to renal protection in Dahl salt-sensitive rats}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch naturwissenschaftliche Reihe}, number = {489}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408088}, pages = {17}, year = {2015}, abstract = {The nitric oxide (NO)/soluble guanylate cyclase (sGC)/cyclic guanosine monophasphate (cGMP)-signalling pathway is impaired under oxidative stress conditions due to oxidation and subsequent loss of the prosthetic sGC heme group as observed in particular in chronic renal failure. Thus, the pool of heme free sGC is increased under pathological conditions. sGC activators such as cinaciguat selectively activate the heme free form of sGC and target the disease associated enzyme. In this study, a therapeutic effect of long-term activation of heme free sGC by the sGC activator cinaciguat was investigated in an experimental model of salt-sensitive hypertension, a condition that is associated with increased oxidative stress, heme loss from sGC and development of chronic renal failure. For that purpose Dahl/ss rats, which develop severe hypertension upon high salt intake, were fed a high salt diet (8\% NaCl) containing either placebo or cinaciguat for 21 weeks. Cinaciguat markedly improved survival and ameliorated the salt-induced increase in blood pressure upon treatment with cinaciguat compared to placebo. Renal function was significantly improved in the cinaciguat group compared to the placebo group as indicated by a significantly improved glomerular filtration rate and reduced urinary protein excretion. This was due to anti-fibrotic and antiinflammatory effects of the cinaciguat treatment. Taken together, this is the first study showing that long-term activation of heme free sGC leads to renal protection in an experimental model of hypertension and chronic kidney disease. These results underline the promising potential of cinaciguat to treat renal diseases by targeting the disease associated heme free form of sGC.}, language = {en} } @misc{MarcHovius2015, author = {Marc, Odin and Hovius, Niels}, title = {Amalgamation in landslide maps}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {485}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408075}, pages = {11}, year = {2015}, abstract = {Inventories of individually delineated landslides are a key to understanding landslide physics and mitigating their impact. They permit assessment of area-frequency distributions and landslide volumes, and testing of statistical correlations between landslides and physical parameters such as topographic gradient or seismic strong motion. Amalgamation, i.e. the mapping of several adjacent landslides as a single polygon, can lead to potentially severe distortion of the statistics of these inventories. This problem can be especially severe in data sets produced by automated mapping. We present five inventories of earthquake-induced landslides mapped with different materials and techniques and affected by varying degrees of amalgamation. Errors on the total landslide volume and power-law exponent of the area-frequency distribution, resulting from amalgamation, may be up to 200 and 50\%, respectively. We present an algorithm based on image and digital elevation model (DEM) analysis, for automatic identification of amalgamated polygons. On a set of about 2000 polygons larger than 1000 m2, tracing landslides triggered by the 1994 Northridge earthquake, the algorithm performs well, with only 2.7-3.6\% incorrectly amalgamated landslides missed and 3.9-4.8\% correct polygons incorrectly identified as amalgams. This algorithm can be used broadly to check landslide inventories and allow faster correction by automating the identification of amalgamation.}, language = {en} } @misc{Wilhelm2018, author = {Wilhelm, Jan Lorenz}, title = {Atmosphere in the home stadium of Hertha BSC (German Bundesliga)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {486}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-420639}, pages = {21}, year = {2018}, abstract = {German football stadiums are well known for their atmosphere. It is often described as 'electrifying,' or 'cracking.' This article focuses on this atmosphere. Using a phenomenological approach, it explores how this emotionality can be understood and how geography matters while attending a match. Atmosphere in this context is conceptualized based on work by as a mood-charged space, neither object- nor subject-centered, but rather a medium of perception which cannot not exist. Based on qualitative research done in the home stadium of Hertha BSC in the German Bundesliga, this article shows that the bodily sensations experienced by spectators during a visit to the stadium are synchronized with events on the pitch and with the more or less imposing scenery. The analysis of in situ diaries reveals that spectators experience a comprehensive sense of collectivity. The study presents evidence that the occurrence of these bodily sensations is strongly connected with different aspects of spatiality. This includes sensations of constriction and expansion within the body, an awareness of one's location within the stadium, the influence of the immediate surroundings and cognitive here/there and inside/outside distinctions.}, language = {en} } @misc{ReilImholtEccardetal.2015, author = {Reil, Daniela and Imholt, Christian and Eccard, Jana and Jacob, Jens}, title = {Beech fructification and bank vole population dynamics}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {484}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-408064}, pages = {14}, year = {2015}, abstract = {The transmission of wildlife zoonoses to humans depends, amongst others, on complex interactions of host population ecology and pathogen dynamics within host populations. In Europe, the Puumala virus (PUUV) causes nephropathia epidemica in humans. In this study we investigated complex interrelations within the epidemic system of PUUV and its rodent host, the bank vole (Myodes glareolus). We suggest that beech fructification and bank vole abundance are both decisive factors affecting human PUUV infections. While rodent host dynamics are expected to be directly linked to human PUUV infections, beech fructification is a rather indirect predictor by serving as food source for PUUV rodent hosts. Furthermore, we examined the dependence of bank vole abundance on beech fructification. We analysed a 12-year (2001-2012) time series of the parameters: beech fructification (as food resource for the PUUV host), bank vole abundance and human incidences from 7 Federal States of Germany. For the first time, we could show the direct interrelation between these three parameters involved in human PUUV epidemics and we were able to demonstrate on a large scale that human PUUV infections are highly correlated with bank vole abundance in the present year, as well as beech fructification in the previous year. By using beech fructification and bank vole abundance as predictors in one model we significantly improved the degree of explanation of human PUUV incidence. Federal State was included as random factor because human PUUV incidence varies considerably among states. Surprisingly, the effect of rodent abundance on human PUUV infections is less strong compared to the indirect effect of beech fructification. Our findings are useful to facilitate the development of predictive models for host population dynamics and the related PUUV infection risk for humans and can be used for plant protection and human health protection purposes.}, language = {en} } @misc{LiepertzBorowski2018, author = {Liepertz, Sven and Borowski, Andreas}, title = {Testing the Consensus Model}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {482}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-416857}, pages = {22}, year = {2018}, abstract = {The structure and definition of professional knowledge is a continuing focus of science education research. In 2012, a pedagogical content knowledge (PCK) summit was held and it suggested a model of professional knowledge and skill including PCK, which was later often called the Consensus Model (Gess-Newsome, 2015. A model of teacher professional knowledge and skill including PCK: Results of the thinking from the PCK summit. In A. Berry, P. J. Friedrichsen, \& J. Loughran (Eds.), Teaching and learning in science series. Re-examining pedagogical content knowledge in science education (1st ed., pp. 28-42). New York, NY: Routledge). The Consensus Model proposes a potential powerful framework for the relations among teachers' different professional knowledge bases, but to date it has neither been investigated empirically nor systematically. In this study, we investigated the relationships suggested by the Consensus Model among different aspects of teachers' knowledge and skill. A sample of 35 physics teachers and their classes participated in the investigation; both teachers and their students in these classes took paper-and-pencil tests. Furthermore, a lesson taught by each of the teachers was videotaped and analysed. The video analysis focused on the interconnectedness of the content structure of the lesson as representation of the in-class actions of the teachers. The interconnectedness is understood as a direct result of the application of professional knowledge of the teachers to their teaching. The teachers' knowledge showed no significant influence on the interconnectedness of the lesson content structure. However, the results confirmed the influence of interconnectedness and certain aspects of professional knowledge on students' outcomes. Therefore, interconnectedness of content structure could be verified as one indicator of teachers' instructional quality.}, language = {en} } @misc{FolkertsmaWestburyEccardetal.2018, author = {Folkertsma, Remco and Westbury, Michael V. and Eccard, Jana and Hofreiter, Michael}, title = {The complete mitochondrial genome of the common vole, Microtus arvalis (Rodentia: Arvicolinae)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {481}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412994}, pages = {2}, year = {2018}, abstract = {The common vole, Microtus arvalis belongs to the genus Microtus in the subfamily Arvicolinae. In this study, the complete mitochondrial genome of M. arvalis was recovered using shotgun sequencing and an iterative mapping approach using three related species. Phylogenetic analyses using the sequence of 21 arvicoline species place the common vole as a sister species to the East European vole (Microtus levis), but as opposed to previous results we find no support for the recognition of the genus Neodon within the subfamily Arvicolinae, as this is, as well as the genus Lasiopodomys, found within the Microtus genus.}, language = {en} } @misc{DelgadoVossBuergeretal.2018, author = {Delgado, Jos{\´e} Miguel Martins and Voss, Sebastian and B{\"u}rger, Gerd and Vormoor, Klaus Josef and Murawski, Aline and Rodrigues Pereira, Jos{\´e} Marcelo and Martins, Eduardo and Vasconcelos J{\´u}nior, Francisco and Francke, Till}, title = {Seasonal drought prediction for semiarid northeastern Brazil}, series = {Hydrology and Earth System Sciences}, journal = {Hydrology and Earth System Sciences}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418461}, pages = {16}, year = {2018}, abstract = {A set of seasonal drought forecast models was assessed and verified for the Jaguaribe River in semiarid northeastern Brazil. Meteorological seasonal forecasts were provided by the operational forecasting system used at FUNCEME (Cear{\´a}'s research foundation for meteorology)and by the European Centre for Medium-Range Weather Forecasts (ECMWF). Three downscaling approaches (empirical quantile mapping, extended downscaling and weather pattern classification) were tested and combined with the models in hindcast mode for the period 1981 to 2014. The forecast issue time was January and the forecast period was January to June. Hydrological drought indices were obtained by fitting a multivariate linear regression to observations. In short, it was possible to obtain forecasts for (a) monthly precipitation,(b) meteorological drought indices, and (c) hydrological drought indices. The skill of the forecasting systems was evaluated with regard to root mean square error (RMSE), the Brier skill score (BSS) and the relative operating characteristic skill score (ROCSS). The tested forecasting products showed similar performance in the analyzed metrics. Forecasts of monthly precipitation had little or no skill considering RMSE and mostly no skill with BSS. A similar picture was seen when forecasting meteorological drought indices: low skill regarding RMSE and BSS and significant skill when discriminating hit rate and false alarm rate given by the ROCSS (forecasting drought events of, e.g., SPEI1 showed a ROCSS of around 0.5). Regarding the temporal variation of the forecast skill of the meteorological indices, it was greatest for April, when compared to the remaining months of the rainy season, while the skill of reservoir volume forecasts decreased with lead time. This work showed that a multi-model ensemble can forecast drought events of timescales relevant to water managers in northeastern Brazil with skill. But no or little skill could be found in the forecasts of monthly precipitation or drought indices of lower scales, like SPI1. Both this work and those here revisited showed that major steps forward are needed in forecasting the rainy season in northeastern Brazil.}, language = {en} } @article{DelgadoVossBuergeretal.2018, author = {Delgado, Jos{\´e} Miguel Martins and Voss, Sebastian and B{\"u}rger, Gerd and Vormoor, Klaus Josef and Murawski, Aline and Rodrigues Pereira, Jos{\´e} Marcelo and Martins, Eduardo and Vasconcelos J{\´u}nior, Francisco and Francke, Till}, title = {Seasonal drought prediction for semiarid northeastern Brazil}, series = {Hydrology and Earth System Sciences}, volume = {22}, journal = {Hydrology and Earth System Sciences}, number = {9}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-22-5041-2018}, pages = {5041 -- 5056}, year = {2018}, abstract = {A set of seasonal drought forecast models was assessed and verified for the Jaguaribe River in semiarid northeastern Brazil. Meteorological seasonal forecasts were provided by the operational forecasting system used at FUNCEME (Cear{\´a}'s research foundation for meteorology)and by the European Centre for Medium-Range Weather Forecasts (ECMWF). Three downscaling approaches (empirical quantile mapping, extended downscaling and weather pattern classification) were tested and combined with the models in hindcast mode for the period 1981 to 2014. The forecast issue time was January and the forecast period was January to June. Hydrological drought indices were obtained by fitting a multivariate linear regression to observations. In short, it was possible to obtain forecasts for (a) monthly precipitation,(b) meteorological drought indices, and (c) hydrological drought indices. The skill of the forecasting systems was evaluated with regard to root mean square error (RMSE), the Brier skill score (BSS) and the relative operating characteristic skill score (ROCSS). The tested forecasting products showed similar performance in the analyzed metrics. Forecasts of monthly precipitation had little or no skill considering RMSE and mostly no skill with BSS. A similar picture was seen when forecasting meteorological drought indices: low skill regarding RMSE and BSS and significant skill when discriminating hit rate and false alarm rate given by the ROCSS (forecasting drought events of, e.g., SPEI1 showed a ROCSS of around 0.5). Regarding the temporal variation of the forecast skill of the meteorological indices, it was greatest for April, when compared to the remaining months of the rainy season, while the skill of reservoir volume forecasts decreased with lead time. This work showed that a multi-model ensemble can forecast drought events of timescales relevant to water managers in northeastern Brazil with skill. But no or little skill could be found in the forecasts of monthly precipitation or drought indices of lower scales, like SPI1. Both this work and those here revisited showed that major steps forward are needed in forecasting the rainy season in northeastern Brazil.}, language = {en} } @misc{CestnikRosenblum2018, author = {Cestnik, Rok and Rosenblum, Michael}, title = {Inferring the phase response curve from observation of a continuously perturbed oscillator}, series = {Scientific Reports}, journal = {Scientific Reports}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418425}, pages = {10}, year = {2018}, abstract = {Phase response curves are important for analysis and modeling of oscillatory dynamics in various applications, particularly in neuroscience. Standard experimental technique for determining them requires isolation of the system and application of a specifically designed input. However, isolation is not always feasible and we are compelled to observe the system in its natural environment under free-running conditions. To that end we propose an approach relying only on passive observations of the system and its input. We illustrate it with simulation results of an oscillator driven by a stochastic force.}, language = {en} } @article{CestnikRosenblum2018, author = {Cestnik, Rok and Rosenblum, Michael}, title = {Inferring the phase response curve from observation of a continuously perturbed oscillator}, series = {Scientific Reports}, volume = {8}, journal = {Scientific Reports}, publisher = {Nature Publishing Group}, address = {London}, issn = {2045-2322}, doi = {10.1038/s41598-018-32069-y}, pages = {1 -- 10}, year = {2018}, abstract = {Phase response curves are important for analysis and modeling of oscillatory dynamics in various applications, particularly in neuroscience. Standard experimental technique for determining them requires isolation of the system and application of a specifically designed input. However, isolation is not always feasible and we are compelled to observe the system in its natural environment under free-running conditions. To that end we propose an approach relying only on passive observations of the system and its input. We illustrate it with simulation results of an oscillator driven by a stochastic force.}, language = {en} } @misc{AbouserieSchildeTaubert2018, author = {Abouserie, Ahed and Schilde, Uwe and Taubert, Andreas}, title = {The crystal structure of N-butylpyridinium bis(μ2-dichlorido)-tetrachloridodicopper(II), C₁₈H₂₈N₂Cu₂Cl₆}, series = {Zeitschrift f{\"u}r Kristallographie - New Crystal Structures}, journal = {Zeitschrift f{\"u}r Kristallographie - New Crystal Structures}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-417310}, pages = {4}, year = {2018}, abstract = {C₉H₁₄Cl₃CuN, monoclinic, P2₁/n (no. 14), a = 9.6625(6) {\AA}, b = 9.3486(3) {\AA}, c = 14.1168(8) {\AA}, β = 102.288(5)°, V = 1245.97(11) {\AA}³, Z = 4, Rgₜ(F) = 0.0182, wRᵣₑf(F²) = 0.0499, T = 210(2) K.}, language = {en} } @article{AbouserieSchildeTaubert2018, author = {Abouserie, Ahed and Schilde, Uwe and Taubert, Andreas}, title = {The crystal structure of N-butylpyridinium bis(μ2-dichlorido)-tetrachloridodicopper(II), C₁₈H₂₈N₂Cu₂Cl₆}, series = {Zeitschrift f{\"u}r Kristallographie - New Crystal Structures}, volume = {233}, journal = {Zeitschrift f{\"u}r Kristallographie - New Crystal Structures}, number = {4}, publisher = {de Gruyter}, address = {Berlin und M{\"u}nchen}, issn = {2194-4946}, doi = {10.1515/NCRS-2018-0099}, pages = {743 -- 746}, year = {2018}, abstract = {C₉H₁₄Cl₃CuN, monoclinic, P2₁/n (no. 14), a = 9.6625(6) {\AA}, b = 9.3486(3) {\AA}, c = 14.1168(8) {\AA}, β = 102.288(5)°, V = 1245.97(11) {\AA}³, Z = 4, Rgₜ(F) = 0.0182, wRᵣₑf(F²) = 0.0499, T = 210(2) K.}, language = {en} } @misc{SanderEccardHeim2017, author = {Sander, Martha Maria and Eccard, Jana and Heim, Wieland}, title = {Flight range estimation of migrant Yellow-browed Warblers Phylloscopus inornatus on the East Asian flyway}, series = {Bird Study}, journal = {Bird Study}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412823}, pages = {5}, year = {2017}, abstract = {Fat loads were quantified for 2125 Yellow-browed Warblers Phylloscopus inornatus trapped at a stop-over site in Far East Russia during autumn migration. Flight ranges of 660-820 km were estimated for the fattest individuals, suggesting that they would need to stop for refuelling at least six times to reach their wintering areas in South East Asia.}, language = {en} } @misc{UtechtKlamroth2018, author = {Utecht, Manuel Martin and Klamroth, Tillmann}, title = {Local resonances in STM manipulation of chlorobenzene on Si(111)-7×7}, series = {Molecular Physics}, journal = {Molecular Physics}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412970}, pages = {11}, year = {2018}, abstract = {Hot localised charge carriers on the Si(111)-7×7 surface are modelled by small charged clusters. Such resonances induce non-local desorption, i.e. more than 10 nm away from the injection site, of chlorobenzene in scanning tunnelling microscope experiments. We used such a cluster model to characterise resonance localisation and vibrational activation for positive and negative resonances recently. In this work, we investigate to which extent the model depends on details of the used cluster or quantum chemistry methods and try to identify the smallest possible cluster suitable for a description of the neutral surface and the ion resonances. Furthermore, a detailed analysis for different chemisorption orientations is performed. While some properties, as estimates of the resonance energy or absolute values for atomic changes, show such a dependency, the main findings are very robust with respect to changes in the model and/or the chemisorption geometry.}, language = {en} } @misc{TodtPenaZuehlkeetal.2011, author = {Todt, Helge Tobias and Pe{\~n}a, Miriam and Z{\"u}hlke, Julia and Oskinova, Lidia M. and Hamann, Wolf-Rainer and Gr{\"a}fener, G{\"o}tz}, title = {Weak emission line central stars of planetary nebulae}, series = {Planetary Nebulae: an Eye to the Future}, journal = {Planetary Nebulae: an Eye to the Future}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413775}, pages = {2}, year = {2011}, abstract = {To understand the evolution and morphology of planetary nebulae, a detailed knowledge of their central stars is required. Central stars that exhibit emission lines in their spectra, indicating stellar mass-loss allow to study the evolution of planetary nebulae in action. Emission line central stars constitute about 10 \% of all central stars. Half of them are practically hydrogen-free Wolf-Rayet type central stars of the carbon sequence, [WC], that show strong emission lines of carbon and oxygen in their spectra. In this contribution we address the weak emission-lines central stars (wels). These stars are poorly analyzed and their hydrogen content is mostly unknown. We obtained optical spectra, that include the important Balmer lines of hydrogen, for four weak emission line central stars. We present the results of our analysis, provide spectral classification and discuss possible explanations for their formation and evolution.}, language = {en} } @misc{VormoorHeistermannBronstertetal.2018, author = {Vormoor, Klaus Josef and Heistermann, Maik and Bronstert, Axel and Lawrence, Deborah}, title = {Hydrological model parameter (in)stability}, series = {Hydrological Sciences Journal}, journal = {Hydrological Sciences Journal}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413008}, pages = {18}, year = {2018}, abstract = {This paper investigates the transferability of calibrated HBV model parameters under stable and contrasting conditions in terms of flood seasonality and flood generating processes (FGP) in five Norwegian catchments with mixed snowmelt/rainfall regimes. We apply a series of generalized (differential) split-sample tests using a 6-year moving window over (i) the entire runoff observation periods, and (ii) two subsets of runoff observations distinguished by the seasonal occurrence of annual maximum floods during either spring or autumn. The results indicate a general model performance loss due to the transfer of calibrated parameters to independent validation periods of -5 to -17\%, on average. However, there is no indication that contrasting flood seasonality exacerbates performance losses, which contradicts the assumption that optimized parameter sets for snowmelt-dominated floods (during spring) perform particularly poorly on validation periods with rainfall-dominated floods (during autumn) and vice versa.}, language = {en} } @misc{FrielerLevermannElliottetal.2015, author = {Frieler, Katja and Levermann, Anders and Elliott, J. and Heinke, J. and Arneth, A. and Bierkens, M. F. P. and Ciais, Philippe and Clark, D. B. and Deryng, D. and Doell, P. and Falloon, P. and Fekete, B. and Folberth, Christian and Friend, A. D. and Gellhorn, C. and Gosling, S. N. and Haddeland, I. and Khabarov, N. and Lomas, M. and Masaki, Y. and Nishina, K. and Neumann, K. and Oki, T. and Pavlick, R. and Ruane, A. C. and Schmid, E. and Schmitz, C. and Stacke, T. and Stehfest, E. and Tang, Q. and Wisser, D. and Huber, V. and Piontek, Franziska and Warszawski, L. and Schewe, Jacob and Lotze-Campen, Hermann and Schellnhuber, Hans Joachim}, title = {A framework for the cross-sectoral integration of multi-model impact projections}, series = {Earth system dynamics}, journal = {Earth system dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407968}, pages = {14}, year = {2015}, abstract = {Climate change and its impacts already pose considerable challenges for societies that will further increase with global warming (IPCC, 2014a, b). Uncertainties of the climatic response to greenhouse gas emissions include the potential passing of large-scale tipping points (e.g. Lenton et al., 2008; Levermann et al., 2012; Schellnhuber, 2010) and changes in extreme meteorological events (Field et al., 2012) with complex impacts on societies (Hallegatte et al., 2013). Thus climate change mitigation is considered a necessary societal response for avoiding uncontrollable impacts (Conference of the Parties, 2010). On the other hand, large-scale climate change mitigation itself implies fundamental changes in, for example, the global energy system. The associated challenges come on top of others that derive from equally important ethical imperatives like the fulfilment of increasing food demand that may draw on the same resources. For example, ensuring food security for a growing population may require an expansion of cropland, thereby reducing natural carbon sinks or the area available for bio-energy production. So far, available studies addressing this problem have relied on individual impact models, ignoring uncertainty in crop model and biome model projections. Here, we propose a probabilistic decision framework that allows for an evaluation of agricultural management and mitigation options in a multi-impact-model setting. Based on simulations generated within the Inter-Sectoral Impact Model Intercomparison Project (ISI-MIP), we outline how cross-sectorally consistent multi-model impact simulations could be used to generate the information required for robust decision making. Using an illustrative future land use pattern, we discuss the trade-off between potential gains in crop production and associated losses in natural carbon sinks in the new multiple crop-and biome-model setting. In addition, crop and water model simulations are combined to explore irrigation increases as one possible measure of agricultural intensification that could limit the expansion of cropland required in response to climate change and growing food demand. This example shows that current impact model uncertainties pose an important challenge to long-term mitigation planning and must not be ignored in long-term strategic decision making.}, language = {en} } @misc{SiegmundSandersHeinrichetal.2016, author = {Siegmund, Jonatan Frederik and Sanders, Tanja G. M. and Heinrich, Ingo and Maaten, Ernst van der and Simard, Sonia and Helle, Gerhard and Donner, Reik Volker}, title = {Meteorological drivers of extremes in daily stem radius variations of beech, oak, and pine in Northeastern Germany}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407943}, pages = {14}, year = {2016}, abstract = {Observed recent and expected future increases in frequency and intensity of climatic extremes in central Europe may pose critical challenges for domestic tree species. Continuous dendrometer recordings provide a valuable source of information on tree stem radius variations, offering the possibility to study a tree's response to environmental influences at a high temporal resolution. In this study, we analyze stem radius variations (SRV) of three domestic tree species (beech, oak, and pine) from 2012 to 2014. We use the novel statistical approach of event coincidence analysis (ECA) to investigate the simultaneous occurrence of extreme daily weather conditions and extreme SRVs, where extremes are defined with respect to the common values at a given phase of the annual growth period. Besides defining extreme events based on individual meteorological variables, we additionally introduce conditional and joint ECA as new multivariate extensions of the original methodology and apply them for testing 105 different combinations of variables regarding their impact on SRV extremes. Our results reveal a strong susceptibility of all three species to the extremes of several meteorological variables. Yet, the inter-species differences regarding their response to the meteorological extremes are comparatively low. The obtained results provide a thorough extension of previous correlation-based studies by emphasizing on the timings of climatic extremes only. We suggest that the employed methodological approach should be further promoted in forest research regarding the investigation of tree responses to changing environmental conditions.}, language = {en} } @misc{HollsteinSeglGuanteretal.2016, author = {Hollstein, Andr{\´e} and Segl, Karl and Guanter, Luis and Brell, Maximilian and Enesco, Marta}, title = {Ready-to-Use methods for the detection of clouds, cirrus, snow, shadow, water and clear sky pixels in Sentinel-2 MSI images}, series = {remote sensing}, journal = {remote sensing}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407938}, pages = {18}, year = {2016}, abstract = {Classification of clouds, cirrus, snow, shadows and clear sky areas is a crucial step in the pre-processing of optical remote sensing images and is a valuable input for their atmospheric correction. The Multi-Spectral Imager on board the Sentinel-2's of the Copernicus program offers optimized bands for this task and delivers unprecedented amounts of data regarding spatial sampling, global coverage, spectral coverage, and repetition rate. Efficient algorithms are needed to process, or possibly reprocess, those big amounts of data. Techniques based on top-of-atmosphere reflectance spectra for single-pixels without exploitation of external data or spatial context offer the largest potential for parallel data processing and highly optimized processing throughput. Such algorithms can be seen as a baseline for possible trade-offs in processing performance when the application of more sophisticated methods is discussed. We present several ready-to-use classification algorithms which are all based on a publicly available database of manually classified Sentinel-2A images. These algorithms are based on commonly used and newly developed machine learning techniques which drastically reduce the amount of time needed to update the algorithms when new images are added to the database. Several ready-to-use decision trees are presented which allow to correctly label about 91\% of the spectra within a validation dataset. While decision trees are simple to implement and easy to understand, they offer only limited classification skill. It improves to 98\% when the presented algorithm based on the classical Bayesian method is applied. This method has only recently been used for this task and shows excellent performance concerning classification skill and processing performance. A comparison of the presented algorithms with other commonly used techniques such as random forests, stochastic gradient descent, or support vector machines is also given. Especially random forests and support vector machines show similar classification skill as the classical Bayesian method.}, language = {en} } @misc{ErrardUlrichsKuehneetal.2016, author = {Errard, Audrey and Ulrichs, Christian and K{\"u}hne, Stefan and Mewis, Inga and Mishig, Narantuya and Maul, Ronald and Drungowski, Mario and Parolin, Pia and Schreiner, Monika and Baldermann, Susanne}, title = {Metabolite profiling reveals a specific response in tomato to predaceous Chrysoperla carnea larvae and herbivore(s)-predator interactions with the generalist pests Tetranychus urticae and Myzus persicae}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407913}, pages = {14}, year = {2016}, abstract = {The spider mite Tetranychus urticae Koch and the aphid Myzus persicae (Sulzer) both infest a number of economically significant crops, including tomato (Solanurn lycopersicum). Although used for decades to control pests, the impact of green lacewing larvae Chrysoperla carnea (Stephens) on plant biochemistry was not investigated. Here, we used profiling methods and targeted analyses to explore the impact of the predator and herbivore(s)-predator interactions on tomato biochemistry. Each pest and pest -predator combination induced a characteristic metabolite signature in the leaf and the fruit thus, the plant exhibited a systemic response. The treatments had a stronger impact on non-volatile metabolites including abscisic acid and amino acids in the leaves in comparison with the fruits. In contrast, the various biotic factors had a greater impact on the carotenoids in the fruits. We identified volatiles such as myrcene and alpha-terpinene which were induced by pest -predator interactions but not by single species, and we demonstrated the involvement of the phytohormone abscisic acid in tritrophic interactions for the first time. More importantly, C. carnea larvae alone impacted the plant metabolome, but the predator did not appear to elicit particular defense pathways on its own. Since the presence of both C. carnea larvae and pest individuals elicited volatiles which were shown to contribute to plant defense, C. carnea larvae could therefore contribute to the reduction of pest infestation, not only by its preying activity, but also by priming responses to generalist herbivores such as T urticae and M. persicae. On the other hand, the use of C. carnea larvae alone did not impact carotenoids thus, was not prejudicial to the fruit quality. The present piece of research highlights the specific impact of predator and tritrophic interactions with green lacewing larvae, spider mites, and aphids on different components of the tomato primary and secondary metabolism for the first time, and provides cues for further in-depth studies aiming to integrate entomological approaches and plant biochemistry.}, language = {en} } @misc{SinghSeitzEickeretal.2016, author = {Singh, Alka and Seitz, Florian and Eicker, Annette and G{\"u}ntner, Andreas}, title = {Water budget analysis within the surrounding of prominent lakes and reservoirs from multi-sensor earth observation data and hydrological models}, series = {remote sensing}, journal = {remote sensing}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407902}, pages = {21}, year = {2016}, abstract = {The hydrological budget of a region is determined based on the horizontal and vertical water fluxes acting in both inward and outward directions. These integrated water fluxes vary, altering the total water storage and consequently the gravitational force of the region. The time-dependent gravitational field can be observed through the Gravity Recovery and Climate Experiment (GRACE) gravimetric satellite mission, provided that the mass variation is above the sensitivity of GRACE. This study evaluates mass changes in prominent reservoir regions through three independent approaches viz. fluxes, storages, and gravity, by combining remote sensing products, in-situ data and hydrological model outputs using WaterGAP Global Hydrological Model (WGHM) and Global Land Data Assimilation System (GLDAS). The results show that the dynamics revealed by the GRACE signal can be better explored by a hybrid method, which combines remote sensing-based reservoir volume estimates with hydrological model outputs, than by exclusive model-based storage estimates. For the given arid/ semi-arid regions, GLDAS based storage estimations perform better than WGHM.}, language = {en} } @misc{TomovPenaRoqueetal.2016, author = {Tomov, Petar and Pena, Rodrigo F. O. and Roque, Antonio C. and Zaks, Michael A.}, title = {Mechanisms of self-sustained oscillatory states in hierarchical modular networks with mixtures of electrophysiological cell types}, series = {Frontiers in computational neuroscience}, journal = {Frontiers in computational neuroscience}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407724}, pages = {17}, year = {2016}, abstract = {In a network with a mixture of different electrophysiological types of neurons linked by excitatory and inhibitory connections, temporal evolution leads through repeated epochs of intensive global activity separated by intervals with low activity level. This behavior mimics "up" and "down" states, experimentally observed in cortical tissues in absence of external stimuli. We interpret global dynamical features in terms of individual dynamics of the neurons. In particular, we observe that the crucial role both in interruption and in resumption of global activity is played by distributions of the membrane recovery variable within the network. We also demonstrate that the behavior of neurons is more influenced by their presynaptic environment in the network than by their formal types, assigned in accordance with their response to constant current.}, language = {en} } @misc{WehrhanRaunekerSommer2016, author = {Wehrhan, Marc and Rauneker, Philipp and Sommer, Michael}, title = {UAV-Based estimation of carbon exports from heterogeneous soil landscapes}, series = {Sensors}, journal = {Sensors}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407706}, pages = {24}, year = {2016}, abstract = {The advantages of remote sensing using Unmanned Aerial Vehicles (UAVs) are a high spatial resolution of images, temporal flexibility and narrow-band spectral data from different wavelengths domains. This enables the detection of spatio-temporal dynamics of environmental variables, like plant-related carbon dynamics in agricultural landscapes. In this paper, we quantify spatial patterns of fresh phytomass and related carbon (C) export using imagery captured by a 12-band multispectral camera mounted on the fixed wing UAV Carolo P360. The study was performed in 2014 at the experimental area CarboZALF-D in NE Germany. From radiometrically corrected and calibrated images of lucerne (Medicago sativa), the performance of four commonly used vegetation indices (VIs) was tested using band combinations of six near-infrared bands. The highest correlation between ground-based measurements of fresh phytomass of lucerne and VIs was obtained for the Enhanced Vegetation Index (EVI) using near-infrared band b(899). The resulting map was transformed into dry phytomass and finally upscaled to total C export by harvest. The observed spatial variability at field- and plot-scale could be attributed to small-scale soil heterogeneity in part.}, language = {en} } @misc{ĆwiekKupczyńskaAltmannArendetal.2016, author = {Ćwiek-Kupczyńska, Hanna and Altmann, Thomas and Arend, Daniel and Arnaud, Elizabeth and Chen, Dijun and Cornut, Guillaume and Fiorani, Fabio and Frohmberg, Wojciech and Junker, Astrid and Klukas, Christian and Lange, Matthias and Mazurek, Cezary and Nafissi, Anahita and Neveu, Pascal and van Oeveren, Jan and Pommier, Cyril and Poorter, Hendrik and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and Scholz, Uwe and van Schriek, Marco and Seren, {\"U}mit and Usadel, Bj{\"o}rn and Weise, Stephan and Kersey, Paul and Krajewski, Paweł}, title = {Measures for interoperability of phenotypic data}, series = {Plant methods}, journal = {Plant methods}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407299}, pages = {18}, year = {2016}, abstract = {Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time ‑consuming experiments, the findings can be fostered by reusing and combin‑ ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑ ment called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA ‑Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA ‑Tab ‑formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.}, language = {en} } @misc{StuetzWeberDolleetal.2016, author = {Stuetz, Wolfgang and Weber, Daniela and Doll{\´e}, Martijn E. T. and Jansen, Eug{\`e}ne and Grubeck-Loebenstein, Beatrix and Fiegl, Simone and Toussaint, Olivier and Bernhardt, Juergen and Gonos, Efstathios S. and Franceschi, Claudio and Sikora, Ewa and Moreno-Villanueva, Mar{\´i}a and Breusing, Nicolle and Grune, Tilman and B{\"u}rkle, Alexander}, title = {Plasma carotenoids, tocopherols, and retinol in the age-stratified (35-74 years) general population}, series = {Nutrients}, journal = {Nutrients}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407659}, pages = {17}, year = {2016}, abstract = {Blood micronutrient status may change with age. We analyzed plasma carotenoids, α-/γ-tocopherol, and retinol and their associations with age, demographic characteristics, and dietary habits (assessed by a short food frequency questionnaire) in a cross-sectional study of 2118 women and men (age-stratified from 35 to 74 years) of the general population from six European countries. Higher age was associated with lower lycopene and α-/β-carotene and higher β-cryptoxanthin, lutein, zeaxanthin, α-/γ-tocopherol, and retinol levels. Significant correlations with age were observed for lycopene (r = -0.248), α-tocopherol (r = 0.208), α-carotene (r = -0.112), and β-cryptoxanthin (r = 0.125; all p < 0.001). Age was inversely associated with lycopene (-6.5\% per five-year age increase) and this association remained in the multiple regression model with the significant predictors (covariables) being country, season, cholesterol, gender, smoking status, body mass index (BMI (kg/m2)), and dietary habits. The positive association of α-tocopherol with age remained when all covariates including cholesterol and use of vitamin supplements were included (1.7\% vs. 2.4\% per five-year age increase). The association of higher β-cryptoxanthin with higher age was no longer statistically significant after adjustment for fruit consumption, whereas the inverse association of α-carotene with age remained in the fully adjusted multivariable model (-4.8\% vs. -3.8\% per five-year age increase). We conclude from our study that age is an independent predictor of plasma lycopene, α-tocopherol, and α-carotene.}, language = {en} } @misc{WotingBlaut2016, author = {Woting, Anni and Blaut, Michael}, title = {The intestinal microbiota in metabolic disease}, series = {Nutrients}, journal = {Nutrients}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407687}, pages = {19}, year = {2016}, abstract = {Gut bacteria exert beneficial and harmful effects in metabolic diseases as deduced from the comparison of germfree and conventional mice and from fecal transplantation studies. Compositional microbial changes in diseased subjects have been linked to adiposity, type 2 diabetes and dyslipidemia. Promotion of an increased expression of intestinal nutrient transporters or a modified lipid and bile acid metabolism by the intestinal microbiota could result in an increased nutrient absorption by the host. The degradation of dietary fiber and the subsequent fermentation of monosaccharides to short-chain fatty acids (SCFA) is one of the most controversially discussed mechanisms of how gut bacteria impact host physiology. Fibers reduce the energy density of the diet, and the resulting SCFA promote intestinal gluconeogenesis, incretin formation and subsequently satiety. However, SCFA also deliver energy to the host and support liponeogenesis. Thus far, there is little knowledge on bacterial species that promote or prevent metabolic disease. Clostridium ramosum and Enterococcus cloacae were demonstrated to promote obesity in gnotobiotic mouse models, whereas bifidobacteria and Akkermansia muciniphila were associated with favorable phenotypes in conventional mice, especially when oligofructose was fed. How diet modulates the gut microbiota towards a beneficial or harmful composition needs further research. Gnotobiotic animals are a valuable tool to elucidate mechanisms underlying diet-host-microbe interactions.}, language = {en} } @misc{AdhikariGlombitzaNickeletal.2016, author = {Adhikari, Rishi Ram and Glombitza, Clemens and Nickel, Julia C. and Anderson, Chloe H. and Dunlea, Ann G. and Spivack, Arthur J. and Murray, Richard W. and D'Hondt, Steven and Kallmeyer, Jens}, title = {Hydrogen utilization potential in subsurface sediments}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407678}, pages = {16}, year = {2016}, abstract = {Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific, and Gulf of Mexico) with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product, or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material. We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i) increasing importance of fermentation in successively deeper biogeochemical zones and (ii) adaptation of H(2)ases to successively higher concentrations of H-2 in successively deeper zones.}, language = {en} } @misc{NishikawaMizunoNiemiecetal.2016, author = {Nishikawa, Ken-Ichi and Mizuno, Yosuke and Niemiec, Jacek and Kobzar, Oleh and Pohl, Martin and G{\´o}mez, Jose L. and Duţan, Ioana and Pe'er, Asaf and Frederiksen, Jacob Trier and Nordlund, {\AA}ke and Meli, Athina and Sol, Helene and Hardee, Philip E. and Hartmann, Dieter H.}, title = {Microscopic processes in global relativistic jets containing helical magnetic fields}, series = {Galaxies}, journal = {Galaxies}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407604}, pages = {9}, year = {2016}, abstract = {In the study of relativistic jets one of the key open questions is their interaction with the environment on the microscopic level. Here, we study the initial evolution of both electron-proton (e(-)-p(+)) and electron-positron (e(+/-)) relativistic jets containing helical magnetic fields, focusing on their interaction with an ambient plasma. We have performed simulations of "global" jets containing helical magnetic fields in order to examine how helical magnetic fields affect kinetic instabilities such as the Weibel instability, the kinetic Kelvin-Helmholtz instability (kKHI) and the Mushroom instability (MI). In our initial simulation study these kinetic instabilities are suppressed and new types of instabilities can grow. In the e(-)-p(+) jet simulation a recollimation-like instability occurs and jet electrons are strongly perturbed. In the e(+/-) jet simulation a recollimation-like instability occurs at early times followed by a kinetic instability and the general structure is similar to a simulation without helical magnetic field. Simulations using much larger systems are required in order to thoroughly follow the evolution of global jets containing helical magnetic fields.}, language = {en} } @misc{GliegeThomasSteidletal.2016, author = {Gliege, Steffen and Thomas, Bj{\"o}rn Daniel and Steidl, J{\"o}rg and Hohenbrink, Tobias Ludwig and Dietrich, Ottfried}, title = {Modeling the impact of ditch water level management on stream-aquifer interactions}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407613}, pages = {17}, year = {2016}, abstract = {Decreasing groundwater levels in many parts of Germany and decreasing low flows in Central Europe have created a need for adaptation measures to stabilize the water balance and to increase low flows. The objective of our study was to estimate the impact of ditch water level management on stream-aquifer interactions in small lowland catchments of the mid-latitudes. The water balance of a ditch-irrigated area and fluxes between the subsurface and the adjacent stream were modeled for three runoff recession periods using the Hydrus-2D software package. The results showed that the subsurface flow to the stream was closely related to the difference between the water level in the ditch system and the stream. Evapotranspiration during the growing season additionally reduced base flow. It was crucial to stop irrigation during a recession period to decrease water withdrawal from the stream and enhance the base flow by draining the irrigated area. Mean fluxes to the stream were between 0.04 and 0.64 ls(-1) for the first 20 days of the low-flow periods. This only slightly increased the flow in the stream, whose mean was 57 ls(-1) during the period with the lowest flows. Larger areas would be necessary to effectively increase flows in mesoscale catchments.}, language = {en} } @misc{ZancolliBakerBarlowetal.2016, author = {Zancolli, Giulia and Baker, Timothy G. and Barlow, Axel and Bradley, Rebecca K. and Calvete, Juan J. and Carter, Kimberley C. and de Jager, Kaylah and Owens, John Benjamin and Price, Jenny Forrester and Sanz, Libia and Scholes-Higham, Amy and Shier, Liam and Wood, Liam and W{\"u}ster, Catharine E. and W{\"u}ster, Wolfgang}, title = {Is hybridization a source of adaptive venom variation in rattlesnakes?}, series = {Toxins}, journal = {Toxins}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407595}, pages = {16}, year = {2016}, abstract = {Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter-and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hybridization has been invoked as a mechanism to explain the distribution of these toxins across rattlesnakes, with the implicit assumption that they are adaptively advantageous. Here, we test the potential of adaptive hybridization as a mechanism for venom evolution by assessing the distribution of genes encoding the acidic and basic subunits of Mojave toxin across a hybrid zone between MTX-positive Crotalus scutulatus and MTX-negative C. viridis in southwestern New Mexico, USA. Analyses of morphology, mitochondrial and single copy-nuclear genes document extensive admixture within a narrow hybrid zone. The genes encoding the two MTX subunits are strictly linked, and found in most hybrids and backcrossed individuals, but not in C. viridis away from the hybrid zone. Presence of the genes is invariably associated with presence of the corresponding toxin in the venom. We conclude that introgression of highly lethal neurotoxins through hybridization is not necessarily favored by natural selection in rattlesnakes, and that even extensive hybridization may not lead to introgression of these genes into another species.}, language = {en} } @misc{DietrichSchweigertSteidletal.2016, author = {Dietrich, Ottfried and Schweigert, Susanne and Steidl, J{\"o}rg and Lischeid, Gunnar}, title = {Effects of data and model simplification on the results of a wetland water resource management model}, series = {Water}, journal = {Water}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407579}, pages = {19}, year = {2016}, abstract = {This paper presents the development of a wetland water balance model for use in a large river basin with many different wetlands. The basic model was primarily developed for a single wetland with a complex water management system involving large amounts of specialized input data and water management details. The aim was to simplify the model structure and to use only commonly available data as input for the model, with the least possible loss of accuracy. Results from different variants of the model and data adaptation were tested against results from a detailed model. This shows that using commonly available data and unifying and simplifying the input data is tolerable up to a certain level. The simplification of the model has greater effects on the evaluated water balance components than the data adaptation. Because this simplification was necessary for large-scale use, we suggest that, for reasons of comparability, simpler models should always be applied with uniform data bases for large regions, though these should only be moderately simplified. Further, we recommend using these simplified models only for large-scale comparisons and using more specific, detailed models for investigations on smaller scales.}, language = {en} } @misc{RainfordHofreiterMayhew2016, author = {Rainford, James L. and Hofreiter, Michael and Mayhew, Peter J.}, title = {Phylogenetic analyses suggest that diversification and body size evolution are independent in insects}, series = {BMC evolutionary biology}, journal = {BMC evolutionary biology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407328}, pages = {17}, year = {2016}, abstract = {Background: Skewed body size distributions and the high relative richness of small-bodied taxa are a fundamental property of a wide range of animal clades. The evolutionary processes responsible for generating these distributions are well described in vertebrate model systems but have yet to be explored in detail for other major terrestrial clades. In this study, we explore the macro-evolutionary patterns of body size variation across families of Hexapoda (insects and their close relatives), using recent advances in phylogenetic understanding, with an aim to investigate the link between size and diversity within this ancient and highly diverse lineage. Results: The maximum, minimum and mean-log body lengths of hexapod families are all approximately log-normally distributed, consistent with previous studies at lower taxonomic levels, and contrasting with skewed distributions typical of vertebrate groups. After taking phylogeny and within-tip variation into account, we find no evidence for a negative relationship between diversification rate and body size, suggesting decoupling of the forces controlling these two traits. Likelihood-based modeling of the log-mean body size identifies distinct processes operating within Holometabola and Diptera compared with other hexapod groups, consistent with accelerating rates of size evolution within these clades, while as a whole, hexapod body size evolution is found to be dominated by neutral processes including significant phylogenetic conservatism. Conclusions: Based on our findings we suggest that the use of models derived from well-studied but atypical clades, such as vertebrates may lead to misleading conclusions when applied to other major terrestrial lineages. Our results indicate that within hexapods, and within the limits of current systematic and phylogenetic knowledge, insect diversification is generally unfettered by size-biased macro-evolutionary processes, and that these processes over large timescales tend to converge on apparently neutral evolutionary processes. We also identify limitations on available data within the clade and modeling approaches for the resolution of trees of higher taxa, the resolution of which may collectively enhance our understanding of this key component of terrestrial ecosystems.}, language = {en} } @misc{VuilleminFrieseAlawietal.2016, author = {Vuillemin, Aur{\`e}le and Friese, Andr{\´e} and Alawi, Mashal and Henny, Cynthia and Nomosatryo, Sulung and Wagner, Dirk and Crowe, Sean A. and Kallmeyer, Jens}, title = {Geomicrobiological features of ferruginous sediments from Lake Towuti, Indonesia}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407312}, pages = {16}, year = {2016}, abstract = {Lake Towuti is a tectonic basin, surrounded by ultramafic rocks. Lateritic soils form through weathering and deliver abundant iron (oxy)hydroxides but very little sulfate to the lake and its sediment. To characterize the sediment biogeochemistry, we collected cores at three sites with increasing water depth and decreasing bottom water oxygen concentrations. Microbial cell densities were highest at the shallow site a feature we attribute to the availability of labile organic matter (OM) and the higher abundance of electron acceptors due to oxic bottom water conditions. At the two other sites, OM degradation and reduction processes below the oxycline led to partial electron acceptor depletion. Genetic information preserved in the sediment as extracellular DNA (eDNA) provided information on aerobic and anaerobic heterotrophs related to Nitrospirae. Chloroflexi, and Therrnoplasmatales. These taxa apparently played a significant role in the degradation of sinking OM. However, eDNA concentrations rapidly decreased with core depth. Despite very low sulfate concentrations, sulfate-reducing bacteria were present and viable in sediments at all three sites, as confirmed by measurement of potential sulfate reduction rates. Microbial community fingerprinting supported the presence of taxa related to Deltaproteobacteria and Firmicutes with demonstrated capacity for iron and sulfate reduction. Concomitantly, sequences of Ruminococcaceae, Clostridiales, and Methanornicrobiales indicated potential for fermentative hydrogen and methane production. Such first insights into ferruginous sediments showed that microbial populations perform successive metabolisms related to sulfur, iron, and methane. In theory, iron reduction could reoxidize reduced sulfur compounds and desorb OM from iron minerals to allow remineralization to methane. Overall, we found that biogeochemical processes in the sediments can be linked to redox differences in the bottom waters of the three sites, like oxidant concentrations and the supply of labile OM. At the scale of the lacustrine record, our geomicrobiological study should provide a means to link the extant subsurface biosphere to past environments.}, language = {en} } @misc{AvilaBenedettoAuetal.2016, author = {Avila, Daiana Silva and Benedetto, Alexandre and Au, Catherine and Bornhorst, Julia and Aschner, Michael A.}, title = {Involvement of heat shock proteins on Mn-induced toxicity in Caenorhabditis elegans}, series = {BMC pharmacology and toxicology}, journal = {BMC pharmacology and toxicology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407286}, pages = {9}, year = {2016}, abstract = {Background: All living cells display a rapid molecular response to adverse environmental conditions, and the heat shock protein family reflects one such example. Hence, failing to activate heat shock proteins can impair the cellular response. In the present study, we evaluated whether the loss of different isoforms of heat shock protein ( hsp ) genes in Caenorhabditis elegans would affect their vulnerability to Manganese (Mn) toxicity. Methods: We exposed wild type and selected hsp mutant worms to Mn (30 min) and next evaluated further the most susceptible strains. We analyzed survi val, protein carbonylation (as a marker of oxidative stress) and Parkinson ' s disease related gene expression immediately after Mn exposure. Lastly, we observed dopaminergic neurons in wild type worms and in hsp-70 mutants following Mn treatment. Analysis of the data was performed by one-way or two way ANOVA, depending on the case, followed by post-hoc Bonferroni test if the overall p value was less than 0.05. Results: We verified that the loss of hsp-70, hsp-3 and chn-1 increased the vulnerability to Mn, as exposed mutant worms showed lower survival rate and increased protein oxidation. The importance of hsp-70 against Mn toxicity was then corroborated in dopaminergic neurons, where Mn neurotoxicity was aggravated. The lack of hsp-70 also blocked the transcriptional upregulation of pink1 , a gene that has been linked to Parkinson ' sdisease. Conclusions: Taken together, our data suggest that Mn exposu re modulates heat shock protein expression, particularly HSP-70, in C. elegans .Furthermore,lossof hsp-70 increases protein oxidation and dopaminergic neuronal degeneration following manganese exposure, which is associated with the inhibition of pink1 increased expression, thus pot entially exacerbating the v ulnerability to this metal.}, language = {en} } @misc{LukoszekFeistIgnatova2016, author = {Lukoszek, Radoslaw and Feist, Peter and Ignatova, Zoya}, title = {Insights into the adaptive response of Arabidopsis thaliana to prolonged thermal stress by ribosomal profiling and RNA-Seq}, series = {BMC plant biology}, journal = {BMC plant biology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407262}, pages = {13}, year = {2016}, abstract = {Background: Environmental stress puts organisms at risk and requires specific stress-tailored responses to maximize survival. Long-term exposure to stress necessitates a global reprogramming of the cellular activities at different levels of gene expression. Results: Here, we use ribosome profiling and RNA sequencing to globally profile the adaptive response of Arabidopsis thaliana to prolonged heat stress. To adapt to long heat exposure, the expression of many genes is modulated in a coordinated manner at a transcriptional and translational level. However, a significant group of genes opposes this trend and shows mainly translational regulation. Different secondary structure elements are likely candidates to play a role in regulating translation of those genes. Conclusions: Our data also uncover on how the subunit stoichiometry of multimeric protein complexes in plastids is maintained upon heat exposure.}, language = {en} } @misc{KuehnFloegelSookthaietal.2016, author = {K{\"u}hn, Tilman and Floegel, Anna and Sookthai, Disorn and Johnson, Theron and Rolle-Kampczyk, Ulrike and Otto, Wolfgang and von Bergen, Martin and Boeing, Heiner and Kaaks, Rudolf}, title = {Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study}, series = {BMC medicine}, journal = {BMC medicine}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407258}, pages = {9}, year = {2016}, abstract = {Background: First metabolomics studies have indicated that metabolic fingerprints from accessible tissues might be useful to better understand the etiological links between metabolism and cancer. However, there is still a lack of prospective metabolomics studies on pre-diagnostic metabolic alterations and cancer risk. Methods: Associations between pre-diagnostic levels of 120 circulating metabolites (acylcarnitines, amino acids, biogenic amines, phosphatidylcholines, sphingolipids, and hexoses) and the risks of breast, prostate, and colorectal cancer were evaluated by Cox regression analyses using data of a prospective case-cohort study including 835 incident cancer cases. Results: The median follow-up duration was 8.3 years among non-cases and 6.5 years among incident cases of cancer. Higher levels of lysophosphatidylcholines (lysoPCs), and especially lysoPC a C18:0, were consistently related to lower risks of breast, prostate, and colorectal cancer, independent of background factors. In contrast, higher levels of phosphatidylcholine PC ae C30:0 were associated with increased cancer risk. There was no heterogeneity in the observed associations by lag time between blood draw and cancer diagnosis. Conclusion: Changes in blood lipid composition precede the diagnosis of common malignancies by several years. Considering the consistency of the present results across three cancer types the observed alterations point to a global metabolic shift in phosphatidylcholine metabolism that may drive tumorigenesis.}, language = {en} } @misc{RoggenbuckBorghiSommaetal.2016, author = {Roggenbuck, Dirk and Borghi, Maria Orietta and Somma, Valentina and B{\"u}ttner, Thomas and Schierack, Peter and Hanack, Katja and Grossi, Claudia and Bodio, Caterina and Macor, Paolo and von Landenberg, Philipp and Boccellato, Francesco and Mahler, Michael and Meroni, Pier Luigi}, title = {Antiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {436}, issn = {1866-8372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407211}, pages = {14}, year = {2016}, abstract = {Background Antiphospholipid antibodies (aPL) can be detected in asymptomatic carriers and infectious patients. The aim was to investigate whether a novel line immunoassay (LIA) differentiates between antiphospholipid syndrome (APS) and asymptomatic aPL+ carriers or patients with infectious diseases (infectious diseases controls (IDC)). Methods Sixty-one patients with APS (56 primary, 22/56 with obstetric events only, and 5 secondary), 146 controls including 24 aPL+ asymptomatic carriers and 73 IDC were tested on a novel hydrophobic solid phase coated with cardiolipin (CL), phosphatic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylserine, beta2-glycoprotein I (β2GPI), prothrombin, and annexin V. Samples were also tested by anti-CL and anti-β2GPI ELISAs and for lupus anticoagulant activity. Human monoclonal antibodies (humoAbs) against human β2GPI or PL alone were tested on the same LIA substrates in the absence or presence of human serum, purified human β2GPI or after CL-micelle absorption. Results Comparison of LIA with the aPL-classification assays revealed good agreement for IgG/IgM aß2GPI and aCL. Anti-CL and anti-ß2GPI IgG/IgM reactivity assessed by LIA was significantly higher in patients with APS versus healthy controls and IDCs, as detected by ELISA. IgG binding to CL and ß2GPI in the LIA was significantly lower in aPL+ carriers and Venereal Disease Research Laboratory test (VDRL) + samples than in patients with APS. HumoAb against domain 1 recognized β2GPI bound to the LIA-matrix and in anionic phospholipid (PL) complexes. Absorption with CL micelles abolished the reactivity of a PL-specific humoAb but did not affect the binding of anti-β2GPI humoAbs. Conclusions The LIA and ELISA have good agreement in detecting aPL in APS, but the LIA differentiates patients with APS from infectious patients and asymptomatic carriers, likely through the exposure of domain 1.}, language = {en} } @misc{KrupinskiBozorgLarssonetal.2016, author = {Krupinski, Pawel and Bozorg, Behruz and Larsson, Andr{\´e} and Pietra, Stefano and Grebe, Markus and J{\"o}nsson, Henrik}, title = {A model analysis of mechanisms for radial microtubular patterns at root hair initiation sites}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407181}, pages = {12}, year = {2016}, abstract = {Plant cells have two main modes of growth generating anisotropic structures. Diffuse growth where whole cell walls extend in specific directions, guided by anisotropically positioned cellulose fibers, and tip growth, with inhomogeneous addition of new cell wall material at the tip of the structure. Cells are known to regulate these processes via molecular signals and the cytoskeleton. Mechanical stress has been proposed to provide an input to the positioning of the cellulose fibers via cortical microtubules in diffuse growth. In particular, a stress feedback model predicts a circumferential pattern of fibers surrounding apical tissues and growing primordia, guided by the anisotropic curvature in such tissues. In contrast, during the initiation of tip growing root hairs, a star-like radial pattern has recently been observed. Here, we use detailed finite element models to analyze how a change in mechanical properties at the root hair initiation site can lead to star-like stress patterns in order to understand whether a stress-based feedback model can also explain the microtubule patterns seen during root hair initiation. We show that two independent mechanisms, individually or combined, can be sufficient to generate radial patterns. In the first, new material is added locally at the position of the root hair. In the second, increased tension in the initiation area provides a mechanism. Finally, we describe how a molecular model of Rho-of-plant (ROP) GTPases activation driven by auxin can position a patch of activated ROP protein basally along a 2D root epidermal cell plasma membrane, paving the way for models where mechanical and molecular mechanisms cooperate in the initial placement and outgrowth of root hairs.}, language = {en} } @misc{LiaimerJensenDittmannThuenemann2016, author = {Liaimer, Anton and Jensen, John B. and Dittmann-Th{\"u}nemann, Elke}, title = {A genetic and chemical perspective on symbiotic recruitment of cyanobacteria of the genus Nostoc into the host plant Blasia pusilla L.}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407179}, pages = {16}, year = {2016}, abstract = {Liverwort Blasia pusilla L. recruits soil nitrogen-fixing cyanobacteria of genus Nostoc as symbiotic partners. In this work we compared Nostoc community composition inside the plants and in the soil around them from two distant locations in Northern Norway. STRR fingerprinting and 16S rDNA phylogeny reconstruction showed a remarkable local diversity among isolates assigned to several Nostoc clades. An extensive web of negative allelopathic interactions was recorded at an agricultural site, but not at the undisturbed natural site. The cell extracts of the cyanobacteria did not show antimicrobial activities, but four isolates were shown to be cytotoxic to human cells. The secondary metabolite profiles of the isolates were mapped by MALDI-TOF MS, and the most prominent ions were further analyzed by Q-TOF for MS/MS aided identification. Symbiotic isolates produced a great variety of small peptide-like substances, most of which lack any record in the databases. Among identified compounds we found microcystin and nodularin variants toxic to eukaryotic cells. Microcystin producing chemotypes were dominating as symbiotic recruits but not in the free-living community. In addition, we were able to identify several novel aeruginosins and banyaside-like compounds, as well as nostocyclopeptides and nosperin.}, language = {en} } @article{vanVelzenGaedke2018, author = {van Velzen, Ellen and Gaedke, Ursula}, title = {Reversed predator}, series = {Ecology and Evolution}, journal = {Ecology and Evolution}, publisher = {Wiley}, address = {Hoboken}, issn = {2045-7758}, doi = {10.1002/ece3.4184}, pages = {1 -- 13}, year = {2018}, abstract = {Ecoevolutionary feedbacks in predator-prey systems have been shown to qualitatively alter predator-prey dynamics. As a striking example, defense-offense coevolution can reverse predator-prey cycles, so predator peaks precede prey peaks rather than vice versa. However, this has only rarely been shown in either model studies or empirical systems. Here, we investigate whether this rarity is a fundamental feature of reversed cycles by exploring under which conditions they should be found. For this, we first identify potential conditions and parameter ranges most likely to result in reversed cycles by developing a new measure, the effective prey biomass, which combines prey biomass with prey and predator traits, and represents the prey biomass as perceived by the predator. We show that predator dynamics always follow the dynamics of the effective prey biomass with a classic ¼-phase lag. From this key insight, it follows that in reversed cycles (i.e., ¾-lag), the dynamics of the actual and the effective prey biomass must be in antiphase with each other, that is, the effective prey biomass must be highest when actual prey biomass is lowest, and vice versa. Based on this, we predict that reversed cycles should be found mainly when oscillations in actual prey biomass are small and thus have limited impact on the dynamics of the effective prey biomass, which are mainly driven by trait changes. We then confirm this prediction using numerical simulations of a coevolutionary predator-prey system, varying the amplitude of the oscillations in prey biomass: Reversed cycles are consistently associated with regions of parameter space leading to small-amplitude prey oscillations, offering a specific and highly testable prediction for conditions under which reversed cycles should occur in natural systems.}, language = {en} } @misc{vanVelzenGaedke2018, author = {van Velzen, Ellen and Gaedke, Ursula}, title = {Reversed predator}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411652}, pages = {13}, year = {2018}, abstract = {Ecoevolutionary feedbacks in predator-prey systems have been shown to qualitatively alter predator-prey dynamics. As a striking example, defense-offense coevolution can reverse predator-prey cycles, so predator peaks precede prey peaks rather than vice versa. However, this has only rarely been shown in either model studies or empirical systems. Here, we investigate whether this rarity is a fundamental feature of reversed cycles by exploring under which conditions they should be found. For this, we first identify potential conditions and parameter ranges most likely to result in reversed cycles by developing a new measure, the effective prey biomass, which combines prey biomass with prey and predator traits, and represents the prey biomass as perceived by the predator. We show that predator dynamics always follow the dynamics of the effective prey biomass with a classic ¼-phase lag. From this key insight, it follows that in reversed cycles (i.e., ¾-lag), the dynamics of the actual and the effective prey biomass must be in antiphase with each other, that is, the effective prey biomass must be highest when actual prey biomass is lowest, and vice versa. Based on this, we predict that reversed cycles should be found mainly when oscillations in actual prey biomass are small and thus have limited impact on the dynamics of the effective prey biomass, which are mainly driven by trait changes. We then confirm this prediction using numerical simulations of a coevolutionary predator-prey system, varying the amplitude of the oscillations in prey biomass: Reversed cycles are consistently associated with regions of parameter space leading to small-amplitude prey oscillations, offering a specific and highly testable prediction for conditions under which reversed cycles should occur in natural systems.}, language = {en} } @misc{UestuenBartetzkoBoernke2015, author = {{\"U}st{\"u}n, Suayib and Bartetzko, Verena and B{\"o}rnke, Frederik}, title = {The Xanthomonas effector XopJ triggers a conditional hypersensitive response upon treatment of N. benthamiana leaves with salicylic acid}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-406537}, pages = {11}, year = {2015}, abstract = {XopJ is a Xanthomonas type III effector protein that promotes bacterial virulence on susceptible pepper plants through the inhibition of the host cell proteasome and a resultant suppression of salicylic acid (SA) - dependent defense responses. We show here that Nicotiana benthamiana leaves transiently expressing XopJ display hypersensitive response (HR) -like symptoms when exogenously treated with SA. This apparent avirulence function of XopJ was further dependent on effector myristoylation as well as on an intact catalytic triad, suggesting a requirement of its enzymatic activity for HR-like symptom elicitation. The ability of XopJ to cause a HR-like symptom development upon SA treatment was lost upon silencing of SGT1 and NDR1, respectively, but was independent of EDS1 silencing, suggesting that XopJ is recognized by an R protein of the CC-NBS-LRR class. Furthermore, silencing of NPR1 abolished the elicitation of HR-like symptoms in XopJ expressing leaves after SA application. Measurement of the proteasome activity indicated that proteasome inhibition by XopJ was alleviated in the presence of SA, an effect that was not observed in NPR1 silenced plants. Our results suggest that XopJ - triggered HR-like symptoms are closely related to the virulence function of the effector and that XopJ follows a two-signal model in order to elicit a response in the non-host plant N. benthamiana.}, language = {en} } @misc{MakowiczTiedemannSteeleetal.2016, author = {Makowicz, Amber M. and Tiedemann, Ralph and Steele, Rachel N. and Schlupp, Ingo}, title = {Kin recognition in a clonal fish, Poecilia formosa}, series = {PLoS ONE}, journal = {PLoS ONE}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411329}, pages = {20}, year = {2016}, abstract = {Relatedness strongly influences social behaviors in a wide variety of species. For most species, the highest typical degree of relatedness is between full siblings with 50\% shared genes. However, this is poorly understood in species with unusually high relatedness between individuals: clonal organisms. Although there has been some investigation into clonal invertebrates and yeast, nothing is known about kin selection in clonal vertebrates. We show that a clonal fish, the Amazon molly (Poecilia formosa), can distinguish between different clonal lineages, associating with genetically identical, sister clones, and use multiple sensory modalities. Also, they scale their aggressive behaviors according to the relatedness to other females: they are more aggressive to non-related clones. Our results demonstrate that even in species with very small genetic differences between individuals, kin recognition can be adaptive. Their discriminatory abilities and regulation of costly behaviors provides a powerful example of natural selection in species with limited genetic diversity.}, language = {en} } @misc{VogtSchippers2015, author = {Vogt, Julia H. M. and Schippers, Jos H. M.}, title = {Setting the PAS, the role of circadian PAS domain proteins during environmental adaptation in plants}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-406492}, pages = {10}, year = {2015}, abstract = {The per-ARNT-sim (PAS) domain represents an ancient protein module that can be found across all kingdoms of life. The domain functions as a sensing unit for a diverse array of signals, including molecular oxygen, small metabolites, and light. In plants, several PAS domain-containing proteins form an integral part of the circadian clock and regulate responses to environmental change. Moreover, these proteins function in pathways that control development and plant stress adaptation responses. Here, we discuss the role of PAS domain-containing proteins in anticipation, and adaptation to environmental changes in plants.}, language = {en} } @misc{WitzelNeugartRuppeletal.2015, author = {Witzel, Katja and Neugart, Susanne and Ruppel, Silke and Schreiner, Monika and Wiesner, Melanie and Baldermann, Susanne}, title = {Recent progress in the use of 'omics technologies in brassicaceous vegetables}, series = {Frontiers in plant science}, journal = {Frontiers in plant science}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-406479}, pages = {14}, year = {2015}, abstract = {Continuing advances in 'omics methodologies and instrumentation is enhancing the understanding of how plants cope with the dynamic nature of their growing environment. 'Omics platforms have been only recently extended to cover horticultural crop species. Many of the most widely cultivated vegetable crops belong to the genus Brassica: these include plants grown for their root (turnip, rutabaga/swede), their swollen stem base (kohlrabi), their leaves (cabbage, kale, pak choi) and their inflorescence (cauliflower, broccoli). Characterization at the genome, transcript, protein and metabolite levels has illustrated the complexity of the cellular response to a whole series of environmental stresses, including nutrient deficiency, pathogen attack, heavy metal toxicity, cold acclimation, and excessive and sub optimal irradiation. This review covers recent applications of omics technologies to the brassicaceous vegetables, and discusses future scenarios in achieving improvements in crop end-use quality.}, language = {en} } @misc{RieckHerlemannJuergensetal.2015, author = {Rieck, Angelika and Herlemann, Daniel P. R. and J{\"u}rgens, Klaus and Grossart, Hans-Peter}, title = {Particle-associated differ from free-living bacteria in surface waters of the Baltic Sea}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-406442}, pages = {13}, year = {2015}, abstract = {Many studies on bacterial community composition (BCC) do not distinguish between particle associated (PA) and free-living (FL) bacteria or neglect the PA fraction by pre-filtration removing most particles. Although temporal and spatial gradients in environmental variables are known to shape BCC, it remains unclear how and to what extent PA and FL bacterial diversity responds to such environmental changes. To elucidate the BCC of both bacterial fractions related to different environmental settings, we studied surface samples of three Baltic Sea stations (marine, mesohaline, and oligohaline) in two different seasons (summer and fall/winter). Amplicon sequencing of the 16S rRNA gene revealed significant differences in BCC of both bacterial fractions among stations and seasons, with a particularly high number of PA operational taxonomic units (OTUs at genus-level) at the marine station in both seasons. "Shannon and Simpson indices" showed a higher diversity of PA than FL bacteria at the marine station in both seasons and at the oligohaline station in fall/winter. In general, a high fraction of bacterial OTUs was found exclusively in the PA fraction (52\% of total OTUs). These findings indicate that PA bacteria significantly contribute to overall bacterial richness and that they differ from FL bacteria. Therefore, to gain a deeper understanding on diversity and dynamics of aquatic bacteria, PA and FL bacteria should be generally studied independently.}, language = {en} } @misc{JohnsonRammKappeletal.2015, author = {Johnson, Kim L. and Ramm, Sascha and Kappel, Christian and Ward, Sally and Leyser, Ottoline and Sakamoto, Tomoaki and Kurata, Tetsuya and Bevan, Michael W. and Lenhard, Michael}, title = {The tinkerbell (tink) mutation identifies the dual-specificity MAPK phosphatase INDOLE- 3-BUTYRIC ACID-RESPONSE5 (IBR5) as a novel regulator of organ size in Arabidopsis}, series = {PLoS ONE}, journal = {PLoS ONE}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410245}, pages = {17}, year = {2015}, abstract = {Mitogen-activated dual-specificity MAPK phosphatases are important negative regulators in the MAPK signalling pathways responsible for many essential processes in plants. In a screen for mutants with reduced organ size we have identified a mutation in the active site of the dual-specificity MAPK phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) that we named tinkerbell (tink) due to its small size. Analysis of the tink mutant indicates that IBR5 acts as a novel regulator of organ size that changes the rate of growth in petals and leaves. Organ size and shape regulation by IBR5 acts independently of the KLU growth-regulatory pathway. Microarray analysis of tink/ibr5-6 mutants identified a likely role for this phosphatase in male gametophyte development. We show that IBR5 may influence the size and shape of petals through auxin and TCP growth regulatory pathways.}, language = {en} } @misc{SchleussnerLissnerFischeretal.2016, author = {Schleussner, Carl-Friedrich and Lissner, Tabea Katharina and Fischer, Erich M. and Wohland, Jan and Perrette, Mah{\´e} and Golly, Antonius and Rogelj, Joeri and Childers, Katelin and Schewe, Jacob and Frieler, Katja and Mengel, Matthias and Hare, William and Schaeffer, Michiel}, title = {Differential climate impacts for policy-relevant limits to global warming}, series = {Earth System Dynamics}, journal = {Earth System Dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410258}, pages = {25}, year = {2016}, abstract = {Robust appraisals of climate impacts at different levels of global-mean temperature increase are vital to guide assessments of dangerous anthropogenic interference with the climate system. The 2015 Paris Agreement includes a two-headed temperature goal: "holding the increase in the global average temperature to well below 2 degrees C above pre-industrial levels and pursuing efforts to limit the temperature increase to 1.5 degrees C". Despite the prominence of these two temperature limits, a comprehensive overview of the differences in climate impacts at these levels is still missing. Here we provide an assessment of key impacts of climate change at warming levels of 1.5 degrees C and 2 degrees C, including extreme weather events, water availability, agricultural yields, sea-level rise and risk of coral reef loss. Our results reveal substantial differences in impacts between a 1.5 degrees C and 2 degrees C warming that are highly relevant for the assessment of dangerous anthropogenic interference with the climate system. For heat-related extremes, the additional 0.5 degrees C increase in global-mean temperature marks the difference between events at the upper limit of present-day natural variability and a new climate regime, particularly in tropical regions. Similarly, this warming difference is likely to be decisive for the future of tropical coral reefs. In a scenario with an end-of-century warming of 2 degrees C, virtually all tropical coral reefs are projected to be at risk of severe degradation due to temperature-induced bleaching from 2050 onwards. This fraction is reduced to about 90\% in 2050 and projected to decline to 70\% by 2100 for a 1.5 degrees C scenario. Analyses of precipitation-related impacts reveal distinct regional differences and hot-spots of change emerge. Regional reduction in median water availability for the Mediterranean is found to nearly double from 9\% to 17\% between 1.5 degrees C and 2 degrees C, and the projected lengthening of regional dry spells increases from 7 to 11\%. Projections for agricultural yields differ between crop types as well as world regions. While some (in particular high-latitude) regions may benefit, tropical regions like West Africa, South-East Asia, as well as Central and northern South America are projected to face substantial local yield reductions, particularly for wheat and maize. Best estimate sea-level rise projections based on two illustrative scenarios indicate a 50cm rise by 2100 relative to year 2000-levels for a 2 degrees C scenario, and about 10 cm lower levels for a 1.5 degrees C scenario. In a 1.5 degrees C scenario, the rate of sea-level rise in 2100 would be reduced by about 30\% compared to a 2 degrees C scenario. Our findings highlight the importance of regional differentiation to assess both future climate risks and different vulnerabilities to incremental increases in global-mean temperature. The article provides a consistent and comprehensive assessment of existing projections and a good basis for future work on refining our understanding of the difference between impacts at 1.5 degrees C and 2 degrees C warming.}, language = {en} } @misc{KlaussKoenigHille2015, author = {Klauß, Andr{\´e} and K{\"o}nig, Marcelle and Hille, Carsten}, title = {Upgrade of a scanning confocal microscope to a single-beam path STED microscope}, series = {PLoS ONE}, journal = {PLoS ONE}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-410261}, pages = {27}, year = {2015}, abstract = {By overcoming the diffraction limit in light microscopy, super-resolution techniques, such as stimulated emission depletion (STED) microscopy, are experiencing an increasing impact on life sciences. High costs and technically demanding setups, however, may still hinder a wider distribution of this innovation in biomedical research laboratories. As far-field microscopy is the most widely employed microscopy modality in the life sciences, upgrading already existing systems seems to be an attractive option for achieving diffraction-unlimited fluorescence microscopy in a cost-effective manner. Here, we demonstrate the successful upgrade of a commercial time-resolved confocal fluorescence microscope to an easy-to-align STED microscope in the single-beam path layout, previously proposed as "easy-STED", achieving lateral resolution aEuro-1000aEuro-A mu atm during periods when phytoplankton biomass increased. In addition, we found significant relationships (e.g., between PP and Chl a) in the untreated mesocosms which were not observed under high fCO(2) conditions. Consequently, it can be hypothesized that the relationship between PP formation and phytoplankton growth changed with CO2 elevation. It can be deduced from the results, that visible effects of CO2 on P pools are coupled to phytoplankton growth when the transformation of PO4 into POP was stimulated. The transformation of PO4 into DOP on the other hand does not seem to be affected. Additionally, there were some indications that cellular mechanisms of P regulation might be modified under CO2 elevation changing the relationship between cellular constituents.}, language = {en} }