@article{RadosavljevicLantuitPollardetal.2016,
  author    = {Radosavljevic, Boris and Lantuit, Hugues and Pollard, Wayne and Overduin, Pier Paul and Couture, Nicole and Sachs, Torsten and Helm, Veit and Fritz, Michael},
  title     = {Erosion and Flooding-Threats to Coastal Infrastructure in the Arctic: A Case Study from Herschel Island, Yukon Territory, Canada},
  series = {Estuaries and coasts : journal of the Estuarine Research Federation},
  volume    = {39},
  journal   = {Estuaries and coasts : journal of the Estuarine Research Federation},
  publisher = {Springer},
  address   = {New York},
  issn      = {1559-2723},
  doi       = {10.1007/s12237-015-0046-0},
  pages     = {900 -- 915},
  year      = {2016},
  abstract  = {Arctic coastal infrastructure and cultural and archeological sites are increasingly vulnerable to erosion and flooding due to amplified warming of the Arctic, sea level rise, lengthening of open water periods, and a predicted increase in frequency of major storms. Mitigating these hazards necessitates decision-making tools at an appropriate scale. The objectives of this paper are to provide such a tool by assessing potential erosion and flood hazards at Herschel Island, a UNESCO World Heritage candidate site. This study focused on Simpson Point and the adjacent coastal sections because of their archeological, historical, and cultural significance. Shoreline movement was analyzed using the Digital Shoreline Analysis System (DSAS) after digitizing shorelines from 1952, 1970, 2000, and 2011. For purposes of this analysis, the coast was divided in seven coastal reaches (CRs) reflecting different morphologies and/or exposures. Using linear regression rates obtained from these data, projections of shoreline position were made for 20 and 50 years into the future. Flood hazard was assessed using a least cost path analysis based on a high-resolution light detection and ranging (LiDAR) dataset and current Intergovernmental Panel on Climate Change sea level estimates. Widespread erosion characterizes the study area. The rate of shoreline movement in different periods of the study ranges from -5.5 to 2.7 mI double dagger a(-1) (mean -0.6 mI double dagger a(-1)). Mean coastal retreat decreased from -0.6 mI double dagger a(-1) to -0.5 mI double dagger a(-1), for 1952-1970 and 1970-2000, respectively, and increased to -1.3 mI double dagger a(-1) in the period 2000-2011. Ice-rich coastal sections most exposed to wave attack exhibited the highest rates of coastal retreat. The geohazard map combines shoreline projections and flood hazard analyses to show that most of the spit area has extreme or very high flood hazard potential, and some buildings are vulnerable to coastal erosion. This study demonstrates that transgressive forcing may provide ample sediment for the expansion of depositional landforms, while growing more susceptible to overwash and flooding.},
  language  = {en}
}
@article{JonesArpWhitmanetal.2017,
  author    = {Jones, Benjamin M. and Arp, Christopher D. and Whitman, Matthew S. and Nigro, Debora and Nitze, Ingmar and Beaver, John and Gadeke, Anne and Zuck, Callie and Liljedahl, Anna and Daanen, Ronald and Torvinen, Eric and Fritz, Stacey and Grosse, Guido},
  title     = {A lake-centric geospatial database to guide research and inform management decisions in an Arctic watershed in northern Alaska experiencing climate and land-use changes},
  series = {AMBIO},
  volume    = {46},
  journal   = {AMBIO},
  publisher = {Springer},
  address   = {Dordrecht},
  issn      = {0044-7447},
  doi       = {10.1007/s13280-017-0915-9},
  pages     = {769 -- 786},
  year      = {2017},
  abstract  = {Lakes are dominant and diverse landscape features in the Arctic, but conventional land cover classification schemes typically map them as a single uniform class. Here, we present a detailed lake-centric geospatial database for an Arctic watershed in northern Alaska. We developed a GIS dataset consisting of 4362 lakes that provides information on lake morphometry, hydrologic connectivity, surface area dynamics, surrounding terrestrial ecotypes, and other important conditions describing Arctic lakes. Analyzing the geospatial database relative to fish and bird survey data shows relations to lake depth and hydrologic connectivity, which are being used to guide research and aid in the management of aquatic resources in the National Petroleum Reserve in Alaska. Further development of similar geospatial databases is needed to better understand and plan for the impacts of ongoing climate and land-use changes occurring across lake-rich landscapes in the Arctic.},
  language  = {en}
}
@article{StraussSchirrmeisterGrosseetal.2017,
  author    = {Strauss, Jens and Schirrmeister, Lutz and Grosse, Guido and Fortier, Daniel and Hugelius, Gustaf and Knoblauch, Christian and Romanovsky, Vladimir E. and Schadel, Christina and von Deimling, Thomas Schneider and Schuur, Edward A. G. and Shmelev, Denis and Ulrich, Mathias and Veremeeva, Alexandra},
  title     = {Deep Yedoma permafrost: A synthesis of depositional characteristics and carbon vulnerability},
  series = {Earth science reviews : the international geological journal bridging the gap between research articles and textbooks},
  volume    = {172},
  journal   = {Earth science reviews : the international geological journal bridging the gap between research articles and textbooks},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {0012-8252},
  doi       = {10.1016/j.earscirev.2017.07.007},
  pages     = {75 -- 86},
  year      = {2017},
  abstract  = {Permafrost is a distinct feature of the terrestrial Arctic and is vulnerable to climate warming. Permafrost degrades in different ways, including deepening of a seasonally unfrozen surface and localized but rapid development of deep thaw features. Pleistocene ice-rich permafrost with syngenetic ice-wedges, termed Yedoma deposits, are widespread in Siberia, Alaska, and Yukon, Canada and may be especially prone to rapid-thaw processes. Freeze-locked organic matter in such deposits can be re-mobilized on short time-scales and contribute to a carbon-cycle climate feedback. Here we synthesize the characteristics and vulnerability of Yedoma deposits by synthesizing studies on the Yedoma origin and the associated organic carbon pool. We suggest that Yedoma deposits accumulated under periglacial weathering, transport, and deposition dynamics in non-glaciated regions during the late Pleistocene until the beginning of late glacial warming. The deposits formed due to a combination of aeolian, colluvial, nival, and alluvial deposition and simultaneous ground ice accumulation. We found up to 130 gigatons organic carbon in Yedoma, parts of which are well-preserved and available for fast decomposition after thaw. Based on incubation experiments, up to 10\% of the Yedoma carbon is considered especially decomposable and may be released upon thaw. The substantial amount of ground ice in Yedoma makes it highly vulnerable to disturbances such as thermokarst and thermo-erosion processes. Mobilization of permafrost carbon is expected to increase under future climate warming. Our synthesis results underline the need of accounting for Yedoma carbon stocks in next generation Earth-System-Models for a more complete representation of the permafrost-carbon feedback.},
  language  = {en}
}
@article{RamageIrrgangHerzschuhetal.2017,
  author    = {Ramage, Justine Lucille and Irrgang, Anna Maria and Herzschuh, Ulrike and Morgenstern, Anne and Couture, Nicole and Lantuit, Hugues},
  title     = {Terrain controls on the occurrence of coastal retrogressive thaw slumps along the Yukon Coast, Canada},
  series = {Journal of geophysical research : Earth surface},
  volume    = {122},
  journal   = {Journal of geophysical research : Earth surface},
  publisher = {American Geophysical Union},
  address   = {Washington},
  issn      = {2169-9003},
  doi       = {10.1002/2017JF004231},
  pages     = {1619 -- 1634},
  year      = {2017},
  abstract  = {Retrogressive thaw slumps (RTSs) are among the most active landforms in the Arctic; their number has increased significantly over the past decades. While processes initiating discrete RTSs are well identified, the major terrain controls on the development of coastal RTSs at a regional scale are not yet defined. Our research reveals the main geomorphic factors that determine the development of RTSs along a 238km segment of the Yukon Coast, Canada. We (1) show the current extent of RTSs, (2) ascertain the factors controlling their activity and initiation, and (3) explain the spatial differences in the density and areal coverage of RTSs. We mapped and classified 287 RTSs using high-resolution satellite images acquired in 2011. We highlighted the main terrain controls over their development using univariate regression trees model. Coastal geomorphology influenced both the activity and initiation of RTSs: active RTSs and RTSs initiated after 1972 occurred primarily on terrains with slope angles greater than 3.9 degrees and 5.9 degrees, respectively. The density and areal coverage of RTSs were constrained by the volume and thickness of massive ice bodies. Differences in rates of coastal change along the coast did not affect the model. We infer that rates of coastal change averaged over a 39year period are unable to reflect the complex relationship between RTSs and coastline dynamics. We emphasize the need for large-scale studies of RTSs to evaluate their impact on the ecosystem and to measure their contribution to the global carbon budget. Plain Language Summary Retrogressive thaw slumps, henceforth slumps are a type of landslides that occur when permafrost thaws. Slumps are active landforms: they develop quickly and extend over several hectares. Satellite imagery allows to map such slumps over large areas. Our research shows where slumps develop along a 238 km segment of the Yukon Coast in Canada and explains which environments are most suitable for slump occurrence. We found that active and newly developed slumps were triggered where coastal slopes were greater than 3.9 degrees and 5.9 degrees, respectively. We explain that coastal erosion influences the development of slumps by modifying coastal slopes. We found that the highest density of slumps as well as the largest slumps occurred on terrains with high amounts of ice bodies in the ground. This study provides tools to better identify areas in the Arctic that are prone to slump development.},
  language  = {en}
}
@article{Ayzel2018,
  author    = {Ayzel, Georgy V.},
  title     = {Runoff predictions in ungauged arctic basins using conceptual models forced by reanalysis data},
  series = {Water Resources},
  volume    = {45},
  journal   = {Water Resources},
  publisher = {Pleiades Publ.},
  address   = {New York},
  issn      = {0097-8078},
  doi       = {10.1134/S0097807818060180},
  pages     = {S1 -- S7},
  year      = {2018},
  abstract  = {Due to global warming, the problem of assessing water resources and their vulnerability to climate drivers in the Arctic region has become a focus in the recent years. This study is aimed at investigating three lumped hydrological models to predict daily runoff of large-scale Arctic basins in the case of substantial data scarcity. All models were driven only by meteorological forcing reanalysis dataset without any additional information about landscape, soil, or vegetation cover properties of the studied basins. Model parameter regionalization based on transferring the whole parameter set showed good efficiency for predictions in ungauged basins. We run a blind test of the proposed methodology for ensemble runoff predictions on five sub-basins, for which only monthly observations were available, and obtained promising results for current water resources assessment for a broad domain of ungauged basins in the Russian Arctic.},
  language  = {en}
}
@article{FritzUnkelLenzetal.2018,
  author    = {Fritz, Michael and Unkel, Ingmar and Lenz, Josefine and Gajewski, Konrad and Frenzel, Peter and Paquette, Nathalie and Lantuit, Hugues and K{\"o}rte, Lisa and Wetterich, Sebastian},
  title     = {Regional environmental change versus local signal preservation in Holocene thermokarst lake sediments},
  series = {Journal of paleolimnolog},
  volume    = {60},
  journal   = {Journal of paleolimnolog},
  number    = {1},
  publisher = {Springer},
  address   = {Dordrecht},
  issn      = {0921-2728},
  doi       = {10.1007/s10933-018-0025-0},
  pages     = {77 -- 96},
  year      = {2018},
  abstract  = {Thermokarst lakes cover nearly one fourth of ice-rich permafrost lowlands in the Arctic. Sediments from an athalassic subsaline thermokarst lake on Herschel Island (69°36′N; 139°04′W, Canadian Arctic) were used to understand regional changes in climate and in sediment transport, hydrology, nutrient availability and permafrost disturbance. The sediment record spans the last ~ 11,700 years and the basal date is in good agreement with the Holocene onset of thermokarst initiation in the region. Electrical conductivity in pore water continuously decreases, thus indicating desalinization and continuous increase of lake size and water level. The inc/coh ratio of XRF scans provides a high-resolution organic-carbon proxy which correlates with TOC measurements. XRF-derived Mn/Fe ratios indicate aerobic versus anaerobic conditions which moderate the preservation potential of organic matter in lake sediments. The coexistence of marine, brackish and freshwater ostracods and foraminifera is explained by (1) oligohaline to mesohaline water chemistry of the past lake and (2) redeposition of Pleistocene specimens found within upthrusted marine sediments around the lake. Episodes of catchment disturbance are identified when calcareous fossils and allochthonous material were transported into the lake by thermokarst processes such as active-layer detachments, slumping and erosion of ice-rich shores. The pollen record does not show major variations and the pollen-based climate record does not match well with other summer air temperature reconstructions from this region. Local vegetation patterns in small catchments are strongly linked to morphology and sub-surface permafrost conditions rather than to climate. Multidisciplinary studies can identify the onset and life cycle of thermokarst lakes as they play a crucial role in Arctic freshwater ecosystems and in the global carbon cycle of the past, present and future.},
  language  = {en}
}
@article{PestryakovaHerzschuhGorodnichevetal.2018,
  author    = {Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike and Gorodnichev, Ruslan and Wetterich, Sebastian},
  title     = {The sensitivity of diatom taxa from Yakutian lakes (north-eastern Siberia) to electrical conductivity and other environmental variables},
  series = {Polar research : a Norwegian journal of Polar research},
  volume    = {37},
  journal   = {Polar research : a Norwegian journal of Polar research},
  publisher = {Routledge, Taylor \& Francis Group},
  address   = {Abingdon},
  issn      = {0800-0395},
  doi       = {10.1080/17518369.2018.1485625},
  pages     = {16},
  year      = {2018},
  abstract  = {Relative abundances of 157 diatom taxa from Yakutian lake surface-sediments were investigated for their potential to indicate certain environmental conditions. Data from 206 sites from Arctic, sub-Arctic and boreal environments were included. Redundancy analyses were performed to assess the explanatory power of mean July temperature (T-July), conductivity, pH, dissolved silica concentration, phosphate concentration, lake depth and vegetation type on diatom species composition. Boosted regression tree analyses were performed to infer the most relevant environmental variables for abundances of individual taxa and weighted average regression was applied to infer their respective optimum and tolerance. Electrical conductivity was best indicated by diatom taxa. In contrast, only few taxa were indicative of Si and water depth. Few taxa were related to specific pH values. Although T-July, explained the highest proportion of variance in the diatom spectra and was, after conductivity, the second-most selected splitting variable, we a priori decided not to present indicator taxa because of the poorly understood relationship between diatom occurrences and T-July. In total, 92 diatom taxa were reliable indicators of a certain vegetation type or a combination of several types. The high numbers of indicative species for open vegetation sites and for forested sites suggest that the principal turnover is the transition from forest-tundra to northern taiga. Overall, our results reveal that preference ranges of diatom taxa for environmental variables are mostly broad, and the use of indicator taxa for the purposes of environmental reconstruction or environmental monitoring is therefore restricted to marked rather than subtle environmental transitions.},
  language  = {en}
}
@article{Straetling2019,
  author    = {Str{\"a}tling, Susanne},
  title     = {The Author as Researcher},
  series = {Russian Literature},
  volume    = {103},
  journal   = {Russian Literature},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {0304-3479},
  doi       = {10.1016/j.ruslit.2019.04.012},
  pages     = {283 -- 303},
  year      = {2019},
  abstract  = {This article proposes a new perspective on avant-garde travel writing through the lens of scientific field work, investigating these new writing techniques in Boris Pil'niak's expedition prose. In the 1920s, the researching writer represents a hidden, but influential counterpart to the widely propagated figure of the working writer. While the author as producer combines word and deed in an operative act, the author as researcher investigates the production of knowledge. This entails revising the centrality of facts. Literature as artistic research subverts factography by going beyond the horizons of veristic data registration to include uncharted realms and vague possibilities. This exploration leads to specific genres: the author as researcher tries his hand at a kind of laboratory text, a prolific genre at the intersection of testing equipment, recording media, and hypothetical thought. Not confined to a sterile lab, avant-garde writer-researchers, as members of research expeditions, oscillate between their home writing desks and the remote depths of the emerging USSR. At the same time, they explore writing practices situated between data acquisition, sampling, fact-finding, observation and recording.},
  language  = {en}
}
@article{EngelsMedeirosAxfordetal.2020,
  author    = {Engels, Stefan and Medeiros, Andrew S. and Axford, Yarrow and Brooks, Steve and Heiri, Oliver and Luoto, Tomi P. and Nazarova, Larisa B. and Porinchu, David F. and Quinlan, Roberto and Self, Angela E.},
  title     = {Temperature change as a driver of spatial patterns and long-term trends in chironomid (Insecta: Diptera) diversity},
  series = {Global change biology},
  volume    = {26},
  journal   = {Global change biology},
  number    = {3},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {1354-1013},
  doi       = {10.1111/gcb.14862},
  pages     = {1155 -- 1169},
  year      = {2020},
  abstract  = {Anthropogenic activities have led to a global decline in biodiversity, and monitoring studies indicate that both insect communities and wetland ecosystems are particularly affected. However, there is a need for long-term data (over centennial or millennial timescales) to better understand natural community dynamics and the processes that govern the observed trends. Chironomids (Insecta: Diptera: Chironomidae) are often the most abundant insects in lake ecosystems, sensitive to environmental change, and, because their larval exoskeleton head capsules preserve well in lake sediments, they provide a unique record of insect community dynamics through time. Here, we provide the results of a metadata analysis of chironomid diversity across a range of spatial and temporal scales. First, we analyse spatial trends in chironomid diversity using Northern Hemispheric data sets overall consisting of 837 lakes. Our results indicate that in most of our data sets, summer temperature (T-jul) is strongly associated with spatial trends in modern-day chironomid diversity. We observe a strong increase in chironomid alpha diversity with increasing T-jul in regions with present-day T-jul between 2.5 and 14 degrees C. In some areas with T-jul > 14 degrees C, chironomid diversity stabilizes or declines. Second, we demonstrate that the direction and amplitude of change in alpha diversity in a compilation of subfossil chironomid records spanning the last glacial-interglacial transition (similar to 15,000-11,000 years ago) are similar to those observed in our modern data. A compilation of Holocene records shows that during phases when the amplitude of temperature change was small, site-specific factors had a greater influence on the chironomid fauna obscuring the chironomid diversity-temperature relationship. Our results imply expected overall chironomid diversity increases in colder regions such as the Arctic under sustained global warming, but with complex and not necessarily predictable responses for individual sites.},
  language  = {en}
}
@phdthesis{Mitzscherling2020,
  author    = {Mitzscherling, Julia},
  title     = {Microbial communities in submarine permafrost and their response to permafrost degradation and warming},
  doi       = {10.25932/publishup-47124},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471240},
  school      = {Universit{\"a}t Potsdam},
  pages     = {I, 231},
  year      = {2020},
  abstract  = {The Arctic region is especially impacted by global warming as temperatures in high latitude regions have increased and are predicted to further rise at levels above the global average. This is crucial to Arctic soils and the shallow shelves of the Arctic Ocean as they are underlain by permafrost. Perennially frozen ground is a habitat for a large number and great diversity of viable microorganisms, which can remain active even under freezing conditions. Warming and thawing of permafrost makes trapped soil organic carbon more accessible to microorganisms. They can transform it to the greenhouse gases carbon dioxide, methane and nitrous oxide. On the other hand, it is assumed that thawing of the frozen ground stimulates microbial activity and carbon turnover. This can lead to a positive feedback loop of warming and greenhouse gas release. Submarine permafrost covers most areas of the Siberian Arctic Shelf and contains a large though unquantified carbon pool. However, submarine permafrost is not only affected by changes in the thermal regime but by drastic changes in the geochemical composition as it formed under terrestrial conditions and was inundated by Holocene sea level rise and coastal erosion. Seawater infiltration into permafrost sediments resulted in an increase of the pore water salinity and, thus, in thawing of permafrost in the upper sediment layers even at subzero temperatures. The permafrost below, which was not affected by seawater, remained ice-bonded, but warmed through seawater heat fluxes. The objective of this thesis was to study microbial communities in submarine permafrost with a focus on their response to seawater influence and long-term warming using a combined approach of molecular biological and physicochemical analyses. The microbial abundance, community composition and structure as well as the diversity were investigated in drill cores from two locations in the Laptev Sea, which were subjected to submarine conditions for centuries to millennia. The microbial abundance was measured through total cell counts and copy numbers of the 16S rRNA gene and of functional genes. The latter comprised genes which are indicative for methane production (mcrA) and sulfate reduction (dsrB). The microbial community was characterized by high-throughput-sequencing of the 16S rRNA gene. Physicochemical analyses included the determination of the pore water geochemical and stable isotopic composition, which were used to describe the degree of seawater influence. One major outcome of the thesis is that the submarine permafrost stratified into different so-called pore water units centuries as well as millennia after inundation: (i) sediments that were mixed with seafloor sediments, (ii) sediments that were infiltrated with seawater, and (iii) sediments that were unaffected by seawater. This stratification was reflected in the submarine permafrost microbial community composition only millennia after inundation but not on time-scales of centuries. Changes in the community composition as well as abundance were used as a measure for microbial activity and the microbial response to changing thermal and geochemical conditions. The results were discussed in the context of permafrost temperature, pore water composition, paleo-climatic proxies and sediment age. The combination of permafrost warming and increasing salinity as well as permafrost warming alone resulted in a disturbance of the microbial communities at least on time-scales of centuries. This was expressed by a loss of microbial abundance and bacterial diversity. At the same time, the bacterial community of seawater unaffected but warmed permafrost was mainly determined by environmental and climatic conditions at the time of sediment deposition. A stimulating effect of warming was observed only in seawater unaffected permafrost after millennia-scale inundation, visible through increased microbial abundance and reduced amounts of substrate. Despite submarine exposure for centuries to millennia, the community of bacteria in submarine permafrost still generally resembled the community of terrestrial permafrost. It was dominated by phyla like Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadetes and Proteobacteria, which can be active under freezing conditions. Moreover, the archaeal communities of both study sites were found to harbor high abundances of marine and terrestrial anaerobic methane oxidizing archaea (ANME). Results also suggested ANME populations to be active under in situ conditions at subzero temperatures. Modeling showed that potential anaerobic oxidation of methane (AOM) could mitigate the release of almost all stored or microbially produced methane from thawing submarine permafrost. Based on the findings presented in this thesis, permafrost warming and thawing under submarine conditions as well as permafrost warming without thaw are supposed to have marginal effects on the microbial abundance and community composition, and therefore likely also on carbon mobilization and the formation of methane. Thawing under submarine conditions even stimulates AOM and thus mitigates the release of methane.},
  language  = {en}
}
@article{MogrovejoAriasBrillWagner2020,
  author    = {Mogrovejo Arias, Diana Carolina and Brill, Florian H. H. and Wagner, Dirk},
  title     = {Potentially pathogenic bacteria isolated from diverse habitats in Spitsbergen, Svalbard},
  series = {Environmental earth sciences},
  volume    = {79},
  journal   = {Environmental earth sciences},
  number    = {5},
  publisher = {Springer},
  address   = {Berlin ; Heidelberg},
  issn      = {1866-6280},
  doi       = {10.1007/s12665-020-8853-4},
  pages     = {9},
  year      = {2020},
  abstract  = {The Arctic ecosystem, a reservoir of genetic microbial diversity, represents a virtually unlimited source of microorganisms that could interact with human beings. Despite continuous exploration of Arctic habitats and description of their microbial communities, bacterial phenotypes commonly associated with pathogenicity, such as hemolytic activity, have rarely been reported. In this study, samples of snow, fresh and marine water, soil, and sediment from several habitats in the Arctic archipelago of Svalbard were collected during Summer, 2017. Bacterial isolates were obtained after incubation on oligotrophic media at different temperatures and their hemolytic potential was assessed on sheep blood agar plates. Partial (alpha) or true (beta) hemolysis was observed in 32 out of 78 bacterial species. Genes expressing cytolytic compounds, such as hemolysins, likely increase the general fitness of the producing microorganisms and confer a competitive advantage over the availability of nutrients in natural habitats. In environmental species, the nutrient-acquisition function of these compounds presumably precedes their function as toxins for mammalian erythrocytes. However, in the light of global warming, the presence of hemolytic bacteria in Arctic environments highlights the possible risks associated with these microorganisms in the event of habitat melting/destruction, ecosystem transition, and re-colonization.},
  language  = {en}
}
@article{RainerSeppeyHammeretal.2021,
  author    = {Rainer, Edda M. and Seppey, Christophe Victor William and Hammer, Caroline and Svenning, Mette M. and Tveit, Alexander Tosdal},
  title     = {The influence of above-ground herbivory on the response of Arctic soil methanotrophs to increasing CH4 concentrations and temperatures},
  series = {Microorganisms : open access journal},
  volume    = {9},
  journal   = {Microorganisms : open access journal},
  number    = {10},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2076-2607},
  doi       = {10.3390/microorganisms9102080},
  pages     = {20},
  year      = {2021},
  abstract  = {Rising temperatures in the Arctic affect soil microorganisms, herbivores, and peatland vegetation, thus directly and indirectly influencing microbial CH4 production. It is not currently known how methanotrophs in Arctic peat respond to combined changes in temperature, CH4 concentration, and vegetation. We studied methanotroph responses to temperature and CH4 concentration in peat exposed to herbivory and protected by exclosures. The methanotroph activity was assessed by CH4 oxidation rate measurements using peat soil microcosms and a pure culture of Methylobacter tundripaludum SV96, qPCR, and sequencing of pmoA transcripts. Elevated CH4 concentrations led to higher CH4 oxidation rates both in grazed and exclosed peat soils, but the strongest response was observed in grazed peat soils. Furthermore, the relative transcriptional activities of different methanotroph community members were affected by the CH4 concentrations. While transcriptional responses to low CH4 concentrations were more prevalent in grazed peat soils, responses to high CH4 concentrations were more prevalent in exclosed peat soils. We observed no significant methanotroph responses to increasing temperatures. We conclude that methanotroph communities in these peat soils respond to changes in the CH4 concentration depending on their previous exposure to grazing. This "conditioning " influences which strains will thrive and, therefore, determines the function of the methanotroph community.},
  language  = {en}
}
@phdthesis{MogrovejoArias2021,
  author    = {Mogrovejo Arias, Diana Carolina},
  title     = {Assessment of the frequency and relevance of potentially pathogenic phenotypes in microbial isolates from Arctic environments},
  school      = {Universit{\"a}t Potsdam},
  pages     = {125},
  year      = {2021},
  abstract  = {The Arctic environments constitute rich and dynamic ecosystems, dominated by microorganisms extremely well adapted to survive and function under severe conditions. A range of physiological adaptations allow the microbiota in these habitats to withstand low temperatures, low water and nutrient availability, high levels of UV radiation, etc. In addition, other adaptations of clear competitive nature are directed at not only surviving but thriving in these environments, by disrupting the metabolism of neighboring cells and affecting intermicrobial communication. Since Arctic microbes are bioindicators which amplify climate alterations in the environment, the Arctic region presents the opportunity to study local microbiota and carry out research about interesting, potentially virulent phenotypes that could be dispersed into other habitats around the globe as a consequence of accelerating climate change. In this context, exploration of Arctic habitats as well as descriptions of the microbes inhabiting them are abundant but microbial competitive strategies commonly associated with virulence and pathogens are rarely reported. In this project, environmental samples from the Arctic region were collected and microorganisms (bacteria and fungi) were isolated. The clinical relevance of these microorganisms was assessed by observing the following virulence markers: ability to grow at a range of temperatures, expression of antimicrobial resistance and production of hemolysins. The aim of this project is to determine the frequency and relevance of these characteristics in an effort to understand microbial adaptations in habitats threatened by climate change. The isolates obtained and described here were able to grow at a range of temperatures, in some cases more than 30 °C higher than their original isolation temperature. A considerable number of them consistently expressed compounds capable of lysing sheep and bovine erythrocytes on blood agar at different incubation temperatures. Ethanolic extracts of these bacteria were able to cause rapid and complete lysis of erythrocyte suspensions and might even be hemolytic when assayed on human blood. In silico analyses showed a variety of resistance elements, some of them novel, against natural and synthetic antimicrobial compounds. In vitro experiments against a number of antimicrobial compounds showed resistance phenotypes belonging to wild-type populations and some non-wild type which clearly denote human influence in the acquisition of antimicrobial resistance. The results of this project demonstrate the presence of virulence-associated factors expressed by microorganisms of natural, non-clinical environments. This study contains some of the first reports, to the best of our knowledge, of hemolytic microbes isolated from the Arctic region. In addition, it provides additional information about the presence and expression of intrinsic and acquired antimicrobial resistance in environmental isolates, contributing to the understanding of the evolution of relevant pathogenic species and opportunistic pathogens. Finally, this study highlights some of the potential risks associated with changes in the polar regions (habitat melting and destruction, ecosystem transition and re-colonization) as important indirect consequences of global warming and altered climatic conditions around the planet.},
  language  = {en}
}
@article{MonhonvalStraussThomasetal.2022,
  author    = {Monhonval, Arthur and Strauss, Jens and Thomas, Maxime and Hirst, Catherine and Titeux, Hugues and Louis, Justin and Gilliot, Alexia and D'Aische, Eleonore du Bois and Pereira, Benoit and Vandeuren, Aubry and Grosse, Guido and Schirrmeister, Lutz and Jongejans, Loeka Laura and Ulrich, Mathias and Opfergelt, Sophie},
  title     = {Thermokarst processes increase the supply of stabilizing surfaces and elements (Fe, Mn, Al, and Ca) for mineral-organic carbon interactions},
  series = {Permafrost and periglacial processes},
  volume    = {33},
  journal   = {Permafrost and periglacial processes},
  number    = {4},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {1045-6740},
  doi       = {10.1002/ppp.2162},
  pages     = {452 -- 469},
  year      = {2022},
  abstract  = {The stabilizing properties of mineral-organic carbon (OC) interactions have been studied in many soil environments (temperate soils, podzol lateritic soils, and paddy soils). Recently, interest in their role in permafrost regions is increasing as permafrost was identified as a hotspot of change. In thawing ice-rich permafrost regions, such as the Yedoma domain, 327-466 Gt of frozen OC is buried in deep sediments. Interactions between minerals and OC are important because OC is located very near the mineral matrix. Mineral surfaces and elements could mitigate recent and future greenhouse gas emissions through physical and/or physicochemical protection of OC. The dynamic changes in redox and pH conditions associated with thermokarst lake formation and drainage trigger metal-oxide dissolution and precipitation, likely influencing OC stabilization and microbial mineralization. However, the influence of thermokarst processes on mineral-OC interactions remains poorly constrained. In this study, we aim to characterize Fe, Mn, Al, and Ca minerals and their potential protective role for OC. Total and selective extractions were used to assess the crystalline and amorphous oxides or complexed metal pools as well as the organic acids found within these pools. We analyzed four sediment cores from an ice-rich permafrost area in Central Yakutia, which were drilled (i) in undisturbed Yedoma uplands, (ii) beneath a recent lake formed within Yedoma deposits, (iii) in a drained thermokarst lake basin, and (iv) beneath a mature thermokarst lake from the early Holocene period. We find a decrease in the amount of reactive Fe, Mn, Al, and Ca in the deposits on lake formation (promoting reduction reactions), and this was largely balanced by an increase in the amount of reactive metals in the deposits on lake drainage (promoting oxidation reactions). We demonstrate an increase in the metal to C molar ratio on thermokarst process, which may indicate an increase in metal-C bindings and could provide a higher protective role against microbial mineralization of organic matter. Finally, we find that an increase in mineral-OC interactions corresponded to a decrease in CO2 and CH4 gas emissions on thermokarst process. Mineral-OC interactions could mitigate greenhouse gas production from permafrost thaw as soon as lake drainage occurs.},
  language  = {en}
}
@phdthesis{Littmann2024,
  author    = {Littmann, Daniela-Christin},
  title     = {Large eddy simulations of the Arctic boundary layer around the MOSAiC drift track},
  doi       = {10.25932/publishup-62437},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-624374},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xii, 110},
  year      = {2024},
  abstract  = {The icosahedral non-hydrostatic large eddy model (ICON-LEM) was applied around the drift track of the Multidisciplinary Observatory Study of the Arctic (MOSAiC) in 2019 and 2020. The model was set up with horizontal grid-scales between 100m and 800m on areas with radii of 17.5km and 140 km. At its lateral boundaries, the model was driven by analysis data from the German Weather Service (DWD), downscaled by ICON in limited area mode (ICON-LAM) with horizontal grid-scale of 3 km. The aim of this thesis was the investigation of the atmospheric boundary layer near the surface in the central Arctic during polar winter with a high-resolution mesoscale model. The default settings in ICON-LEM prevent the model from representing the exchange processes in the Arctic boundary layer in accordance to the MOSAiC observations. The implemented sea-ice scheme in ICON does not include a snow layer on sea-ice, which causes a too slow response of the sea-ice surface temperature to atmospheric changes. To allow the sea-ice surface to respond faster to changes in the atmosphere, the implemented sea-ice parameterization in ICON was extended with an adapted heat capacity term. The adapted sea-ice parameterization resulted in better agreement with the MOSAiC observations. However, the sea-ice surface temperature in the model is generally lower than observed due to biases in the downwelling long-wave radiation and the lack of complex surface structures, like leads. The large eddy resolving turbulence closure yielded a better representation of the lower boundary layer under strongly stable stratification than the non-eddy-resolving turbulence closure. Furthermore, the integration of leads into the sea-ice surface reduced the overestimation of the sensible heat flux for different weather conditions. The results of this work help to better understand boundary layer processes in the central Arctic during the polar night. High-resolving mesoscale simulations are able to represent temporally and spatially small interactions and help to further develop parameterizations also for the application in regional and global models.},
  language  = {en}
}
@phdthesis{WindirschWoiwode2024,
  author    = {Windirsch-Woiwode, Torben},
  title     = {Permafrost carbon stabilisation by recreating a herbivore-driven ecosystem},
  doi       = {10.25932/publishup-62424},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-624240},
  school      = {Universit{\"a}t Potsdam},
  pages     = {X, 104, A-57},
  year      = {2024},
  abstract  = {With Arctic ground as a huge and temperature-sensitive carbon reservoir, maintaining low ground temperatures and frozen conditions to prevent further carbon emissions that contrib-ute to global climate warming is a key element in humankind's fight to maintain habitable con-ditions on earth. Former studies showed that during the late Pleistocene, Arctic ground condi-tions were generally colder and more stable as the result of an ecosystem dominated by large herbivorous mammals and vast extents of graminoid vegetation - the mammoth steppe. Characterised by high plant productivity (grassland) and low ground insulation due to animal-caused compression and removal of snow, this ecosystem enabled deep permafrost aggrad-ation. Now, with tundra and shrub vegetation common in the terrestrial Arctic, these effects are not in place anymore. However, it appears to be possible to recreate this ecosystem local-ly by artificially increasing animal numbers, and hence keep Arctic ground cold to reduce or-ganic matter decomposition and carbon release into the atmosphere. By measuring thaw depth, total organic carbon and total nitrogen content, stable carbon iso-tope ratio, radiocarbon age, n-alkane and alcohol characteristics and assessing dominant vegetation types along grazing intensity transects in two contrasting Arctic areas, it was found that recreating conditions locally, similar to the mammoth steppe, seems to be possible. For permafrost-affected soil, it was shown that intensive grazing in direct comparison to non-grazed areas reduces active layer depth and leads to higher TOC contents in the active layer soil. For soil only frozen on top in winter, an increase of TOC with grazing intensity could not be found, most likely because of confounding factors such as vertical water and carbon movement, which is not possible with an impermeable layer in permafrost. In both areas, high animal activity led to a vegetation transformation towards species-poor graminoid-dominated landscapes with less shrubs. Lipid biomarker analysis revealed that, even though the available organic material is different between the study areas, in both permafrost-affected and sea-sonally frozen soils the organic material in sites affected by high animal activity was less de-composed than under less intensive grazing pressure. In conclusion, high animal activity af-fects decomposition processes in Arctic soils and the ground thermal regime, visible from reduced active layer depth in permafrost areas. Therefore, grazing management might be utilised to locally stabilise permafrost and reduce Arctic carbon emissions in the future, but is likely not scalable to the entire permafrost region.},
  language  = {en}
}
@phdthesis{Aue2024,
  author    = {Aue, Lars},
  title     = {Cyclone impacts on sea ice in the Atlantic Arctic Ocean},
  doi       = {10.25932/publishup-63445},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-634458},
  school      = {Universit{\"a}t Potsdam},
  pages     = {VIII, 131},
  year      = {2024},
  abstract  = {The Arctic is the hot spot of the ongoing, global climate change. Over the last decades, near-surface temperatures in the Arctic have been rising almost four times faster than on global average. This amplified warming of the Arctic and the associated rapid changes of its environment are largely influenced by interactions between individual components of the Arctic climate system. On daily to weekly time scales, storms can have major impacts on the Arctic sea-ice cover and are thus an important part of these interactions within the Arctic climate. The sea-ice impacts of storms are related to high wind speeds, which enhance the drift and deformation of sea ice, as well as to changes in the surface energy budget in association with air mass advection, which impact the seasonal sea-ice growth and melt. The occurrence of storms in the Arctic is typically associated with the passage of transient cyclones. Even though the above described mechanisms how storms/cyclones impact the Arctic sea ice are in principal known, there is a lack of statistical quantification of these effects. In accordance with that, the overarching objective of this thesis is to statistically quantify cyclone impacts on sea-ice concentration (SIC) in the Atlantic Arctic Ocean over the last four decades. In order to further advance the understanding of the related mechanisms, an additional objective is to separate dynamic and thermodynamic cyclone impacts on sea ice and assess their relative importance. Finally, this thesis aims to quantify recent changes in cyclone impacts on SIC. These research objectives are tackled utilizing various data sets, including atmospheric and oceanic reanalysis data as well as a coupled model simulation and a cyclone tracking algorithm. Results from this thesis demonstrate that cyclones are significantly impacting SIC in the Atlantic Arctic Ocean from autumn to spring, while there are mostly no significant impacts in summer. The strength and the sign (SIC decreasing or SIC increasing) of the cyclone impacts strongly depends on the considered daily time scale and the region of the Atlantic Arctic Ocean. Specifically, an initial decrease in SIC (day -3 to day 0 relative to the cyclone) is found in the Greenland, Barents and Kara Seas, while SIC increases following cyclones (day 0 to day 5 relative to the cyclone) are mostly limited to the Barents and Kara Seas. For the cold season, this results in a pronounced regional difference between overall (day -3 to day 5 relative to the cyclone) SIC-decreasing cyclone impacts in the Greenland Sea and overall SIC-increasing cyclone impacts in the Barents and Kara Seas. A cyclone case study based on a coupled model simulation indicates that both dynamic and thermodynamic mechanisms contribute to cyclone impacts on sea ice in winter. A typical pattern consisting of an initial dominance of dynamic sea-ice changes followed by enhanced thermodynamic ice growth after the cyclone passage was found. This enhanced ice growth after the cyclone passage most likely also explains the (statistical) overall SIC-increasing effects of cyclones in the Barents and Kara Seas in the cold season. Significant changes in cyclone impacts on SIC over the last four decades have emerged throughout the year. These recent changes are strongly varying from region to region and month to month. The strongest trends in cyclone impacts on SIC are found in autumn in the Barents and Kara Seas. Here, the magnitude of destructive cyclone impacts on SIC has approximately doubled over the last four decades. The SIC-increasing effects following the cyclone passage have particularly weakened in the Barents Sea in autumn. As a consequence, previously existing overall SIC-increasing cyclone impacts in this region in autumn have recently disappeared. Generally, results from this thesis show that changes in the state of the sea-ice cover (decrease in mean sea-ice concentration and thickness) and near-surface air temperature are most important for changed cyclone impacts on SIC, while changes in cyclone properties (i.e. intensity) do not play a significant role.},
  language  = {en}
}
@phdthesis{Hippel2024,
  author    = {Hippel, Barbara von},
  title     = {Long-term bacteria-fungi-plant associations in permafrost soils inferred from palaeometagenomics},
  doi       = {10.25932/publishup-63600},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-636009},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xii, 198},
  year      = {2024},
  abstract  = {The arctic is warming 2 - 4 times faster than the global average, resulting in a strong feedback on northern ecosystems such as boreal forests, which cover a vast area of the high northern latitudes. With ongoing global warming, the treeline subsequently migrates northwards into tundra areas. The consequences of turning ecosystems are complex: on the one hand, boreal forests are storing large amounts of global terrestrial carbon and act as a carbon sink, dragging carbon dioxide out of the global carbon cycle, suggesting an enhanced carbon uptake with increased tree cover. On the other hand, with the establishment of trees, the albedo effect of tundra decreases, leading to enhanced soil warming. Meanwhile, permafrost thaws, releasing large amounts of previously stored carbon into the atmosphere. So far, mainly vegetation dynamics have been assessed when studying the impact of warming onto ecosystems. Most land plants are living in close symbiosis with bacterial and fungal communities, sustaining their growth in nutrient poor habitats. However, the impact of climate change on these subsoil communities alongside changing vegetation cover remains poorly understood. Therefore, a better understanding of soil community dynamics on multi millennial timescales is inevitable when addressing the development of entire ecosystems. Unravelling long-term cross-kingdom dependencies between plant, fungi, and bacteria is not only a milestone for the assessment of warming on boreal ecosystems. On top, it also is the basis for agriculture strategies to sustain society with sufficient food in a future warming world. The first objective of this thesis was to assess ancient DNA as a proxy for reconstructing the soil microbiome (Manuscripts I, II, III, IV). Research findings across these projects enable a comprehensive new insight into the relationships of soil microorganisms to the surrounding vegetation. First, this was achieved by establishing (Manuscript I) and applying (Manuscript II) a primer pair for the selective amplification of ancient fungal DNA from lake sediment samples with the metabarcoding approach. To assess fungal and plant co-variation, the selected primer combination (ITS67, 5.8S) amplifying the ITS1 region was applied on samples from five boreal and arctic lakes. The obtained data showed that the establishment of fungal communities is impacted by warming as the functional ecological groups are shifting. Yeast and saprotroph dominance during the Late Glacial declined with warming, while the abundance of mycorrhizae and parasites increased with warming. The overall species richness was also alternating. The results were compared to shotgun sequencing data reconstructing fungi and bacteria (Manuscripts III, IV), yielding overall comparable results to the metabarcoding approach. Nonetheless, the comparison also pointed out a bias in the metabarcoding, potentially due to varying ITS lengths or copy numbers per genome. The second objective was to trace fungus-plant interaction changes over time (Manuscripts II, III). To address this, metabarcoding targeting the ITS1 region for fungi and the chloroplast P6 loop for plants for the selective DNA amplification was applied (Manuscript II). Further, shotgun sequencing data was compared to the metabarcoding results (Manuscript III). Overall, the results between the metabarcoding and the shotgun approaches were comparable, though a bias in the metabarcoding was assumed. We demonstrated that fungal shifts were coinciding with changes in the vegetation. Yeast and lichen were mainly dominant during the Late Glacial with tundra vegetation, while warming in the Holocene lead to the expansion of boreal forests with increasing mycorrhizae and parasite abundance. Aside, we highlighted that Pinaceae establishment is dependent on mycorrhizal fungi such as Suillineae, Inocybaceae, or Hyaloscypha species also on long-term scales. The third objective of the thesis was to assess soil community development on a temporal gradient (Manuscripts III, IV). Shotgun sequencing was applied on sediment samples from the northern Siberian lake Lama and the soil microbial community dynamics compared to ecosystem turnover. Alongside, podzolization processes from basaltic bedrock were recovered (Manuscript III). Additionally, the recovered soil microbiome was compared to shotgun data from granite and sandstone catchments (Manuscript IV, Appendix). We assessed if the establishment of the soil microbiome is dependent on the plant taxon and as such comparable between multiple geographic locations or if the community establishment is driven by abiotic soil properties and as such the bedrock area. We showed that the development of soil communities is to a great extent driven by the vegetation changes and temperature variation, while time only plays a minor role. The analyses showed general ecological similarities especially between the granite and basalt locations, while the microbiome on species-level was rather site-specific. A greater number of correlated soil taxa was detected for deep-rooting boreal taxa in comparison to grasses with shallower roots. Additionally, differences between herbaceous taxa of the late Glacial compared to taxa of the Holocene were revealed. With this thesis, I demonstrate the necessity to investigate subsoil community dynamics on millennial time scales as it enables further understanding of long-term ecosystem as well as soil development processes and such plant establishment. Further, I trace long-term processes leading to podzolization which supports the development of applied carbon capture strategies under future global warming.},
  language  = {en}
}