@article{AbdallaAdamAharonianetal.2020, author = {Abdalla, H. and Adam, R. and Aharonian, Felix A. and Benkhali, F. Ait and Ang{\"u}ner, Ekrem Oǧuzhan and Arcaro, C. and Armand, C. and Armstrong, T. and Ashkar, H. and Backes, M. and Baghmanyan, V. and Martins, V. Barbosa and Barnacka, A. and Barnard, M. and Becherini, Y. and Berge, D. and Bernlohr, K. and Bi, B. and Bottcher, M. and Boisson, C. and Bolmont, J. and de Lavergne, M. de Bony and Bordas, Pol and Breuhaus, M. and Brun, F. and Brun, P. and Bryan, M. and Buchele, M. and Bulik, T. and Bylund, T. and Caroff, S. and Carosi, A. and Casanova, Sabrina and Chand, T. and Chandra, S. and Chen, A. and Cotter, G. and Curylo, M. and Mbarubucyeye, J. Damascene and Davids, I. D. and Davies, J. and Deil, C. and Devin, J. and deWilt, P. and Dirson, L. and Djannati-Atai, A. and Dmytriiev, A. and Donath, A. and Doroshenko, V. and Duffy, C. and Dyks, J. and Egberts, Kathrin and Eichhorn, F. and Einecke, S. and Emery, G. and Ernenwein, J. -P. and Feijen, K. and Fegan, S. and Fiasson, A. and de Clairfontaine, G. Fichet and Fontaine, G. and Funk, S. and Fussling, Matthias and Gabici, S. and Gallant, Y. A. and Giavitto, G. and Giunti, L. and Glawion, D. and Glicenstein, J. F. and Gottschall, D. and Grondin, M. -H. and Hahn, J. and Haupt, M. and Hermann, G. and Hinton, J. A. and Hofmann, W. and Hoischen, Clemens and Holch, T. L. and Holler, M. and Horbe, M. and Horns, D. and Huber, D. and Jamrozy, M. and Jankowsky, D. and Jankowsky, F. and Jardin-Blicq, A. and Joshi, V. and Jung-Richardt, I. and Kasai, E. and Kastendieck, M. A. and Katarzynski, K. and Katz, U. and Khangulyan, D. and Khelifi, B. and Klepser, S. and Kluzniak, W. and Komin, Nu. and Konno, R. and Kosack, K. and Kostunin, D. and Kreter, M. and Lamanna, G. and Lemiere, A. and Lemoine-Goumard, M. and Lenain, J. -P. and Levy, C. and Lohse, T. and Lypova, I. and Mackey, J. and Majumdar, J. and Malyshev, D. and Malyshev, D. and Marandon, V. and Marchegiani, P. and Marcowith, Alexandre and Mares, A. and Marti-Devesa, G. and Marx, R. and Maurin, G. and Meintjes, P. J. and Meyer, M. and Mitchell, A. and Moderski, R. and Mohamed, M. and Mohrmann, L. and Montanari, A. and Moore, C. and Morris, P. and Moulin, Emmanuel and Muller, J. and Murach, T. and Nakashima, K. and Nayerhoda, A. and de Naurois, M. and Ndiyavala, H. and Niederwanger, F. and Niemiec, J. and Oakes, L. and O'Brien, Patrick and Odaka, H. and Ohm, S. and Olivera-Nieto, L. and Wilhelmi, E. de Ona and Ostrowski, M. and Oya, I. and Panter, M. and Panny, S. and Parsons, R. D. and Peron, G. and Peyaud, B. and Piel, Q. and Pita, S. and Poireau, V. and Noel, A. Priyana and Prokhorov, D. A. and Prokoph, H. and Puhlhofer, G. and Punch, M. and Quirrenbach, A. and Raab, S. and Rauth, R. and Reichherzer, P. and Reimer, A. and Reimer, O. and Remy, Q. and Renaud, M. and Rieger, F. and Rinchiuso, L. and Romoli, C. and Rowell, G. and Rudak, B. and Ruiz-Velasco, E. and Sahakian, V. and Sailer, S. and Sanchez, D. A. and Santangelo, A. and Sasaki, M. and Scalici, M. and Schussler, F. and Schutte, H. M. and Schwanke, U. and Schwemmer, S. and Seglar-Arroyo, M. and Senniappan, M. and Seyffert, A. S. and Shafi, N. and Shiningayamwe, K. and Simoni, R. and Sinha, A. and Sol, H. and Specovius, A. and Spencer, S. and Spir-Jacob, M. and Stawarz, L. and Sun, L. and Steenkamp, R. and Stegmann, C. and Steinmassl, S. and Steppa, C. and Takahashi, T. and Tavernier, T. and Taylor, A. M. and Terrier, R. and Tiziani, D. and Tluczykont, M. and Tomankova, L. and Trichard, C. and Tsirou, M. and Tuffs, R. and Uchiyama, Y. and van der Walt, D. J. and van Eldik, C. and van Rensburg, C. and van Soelen, B. and Vasileiadis, G. and Veh, J. and Venter, C. and Vincent, P. and Vink, J. and Volk, H. J. and Vuillaume, T. and Wadiasingh, Z. and Wagner, S. J. and Watson, J. and Werner, F. and White, R. and Wierzcholska, A. and Wong, Yu Wun and Yusafzai, A. and Zacharias, M. and Zanin, R. and Zargaryan, D. and Zdziarski, A. A. and Zech, Alraune and Zhu, S. J. and Ziegler, A. and Zorn, J. and Zouari, S. and Zywucka, N.}, title = {An extreme particle accelerator in the Galactic plane}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {644}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, organization = {HESS Collaboration}, issn = {0004-6361}, doi = {10.1051/0004-6361/202038851}, pages = {8}, year = {2020}, abstract = {The unidentified very-high-energy (VHE; E > 0.1 TeV) gamma -ray source, HESS J1826-130, was discovered with the High Energy Stereoscopic System (HESS) in the Galactic plane. The analysis of 215 h of HESS data has revealed a steady gamma -ray flux from HESS J1826-130, which appears extended with a half-width of 0.21 degrees +/- 0.02
(stat)degrees
stat degrees +/- 0.05
(sys)degrees sys degrees . The source spectrum is best fit with either a power-law function with a spectral index Gamma = 1.78 +/- 0.10(stat) +/- 0.20(sys) and an exponential cut-off at 15.2
(+5.5)(-3.2) -3.2+5.5 TeV, or a broken power-law with Gamma (1) = 1.96 +/- 0.06(stat) +/- 0.20(sys), Gamma (2) = 3.59 +/- 0.69(stat) +/- 0.20(sys) for energies below and above E-br = 11.2 +/- 2.7 TeV, respectively. The VHE flux from HESS J1826-130 is contaminated by the extended emission of the bright, nearby pulsar wind nebula, HESS J1825-137, particularly at the low end of the energy spectrum. Leptonic scenarios for the origin of HESS J1826-130 VHE emission related to PSR J1826-1256 are confronted by our spectral and morphological analysis. In a hadronic framework, taking into account the properties of dense gas regions surrounding HESS J1826-130, the source spectrum would imply an astrophysical object capable of accelerating the parent particle population up to greater than or similar to 200 TeV. Our results are also discussed in a multiwavelength context, accounting for both the presence of nearby supernova remnants, molecular clouds, and counterparts detected in radio, X-rays, and TeV energies.}, language = {en} } @article{AbdallaAdamAharonianetal.2020, author = {Abdalla, Hassan E. and Adam, Remi and Aharonian, Felix A. and Benkhali, Faical Ait and Ang{\"u}ner, Ekrem Oǧuzhan and Arakawa, Masanori and Arcaro, C and Armand, Catherine and Armstrong, T. and Egberts, Kathrin}, title = {Very high energy γ-ray emission from two blazars of unknown redshift and upper limits on their distance}, series = {Monthly Notices of the Royal Astronomical Society}, volume = {494}, journal = {Monthly Notices of the Royal Astronomical Society}, number = {4}, publisher = {Wiley-Blackwell}, address = {Oxford}, pages = {13}, year = {2020}, abstract = {We report on the detection of very high energy (VHE; E > 100 GeV) gamma-ray emission from the BL Lac objects KUV 00311-1938 and PKS 1440-389 with the High Energy Stereoscopic System (H.E.S.S.). H.E.S.S. observations were accompanied or preceded by multiwavelength observations with Fermi/LAT, XRT and UVOT onboard the Swift satellite, and ATOM. Based on an extrapolation of the Fermi/LAT spectrum towards the VHE gamma-ray regime, we deduce a 95 per cent confidence level upper limit on the unknown redshift of KUV 00311-1938 of z < 0.98 and of PKS 1440-389 of z < 0.53. When combined with previous spectroscopy results, the redshift of KUV 00311-1938 is constrained to 0.51 <= z < 0.98 and of PKS 1440-389 to 0.14 (sic) z < 0.53.}, language = {en} } @misc{AbdallaAdamAharonianetal.2020, author = {Abdalla, Hassan E. and Adam, Remi and Aharonian, Felix A. and Benkhali, Faical Ait and Ang{\"u}ner, Ekrem Oǧuzhan and Arakawa, Masanori and Arcaro, C and Armand, Catherine and Armstrong, T. and Egberts, Kathrin}, title = {Very high energy γ-ray emission from two blazars of unknown redshift and upper limits on their distance}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {4}, issn = {1866-8372}, doi = {10.25932/publishup-52600}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-526000}, pages = {15}, year = {2020}, abstract = {We report on the detection of very high energy (VHE; E > 100 GeV) gamma-ray emission from the BL Lac objects KUV 00311-1938 and PKS 1440-389 with the High Energy Stereoscopic System (H.E.S.S.). H.E.S.S. observations were accompanied or preceded by multiwavelength observations with Fermi/LAT, XRT and UVOT onboard the Swift satellite, and ATOM. Based on an extrapolation of the Fermi/LAT spectrum towards the VHE gamma-ray regime, we deduce a 95 per cent confidence level upper limit on the unknown redshift of KUV 00311-1938 of z < 0.98 and of PKS 1440-389 of z < 0.53. When combined with previous spectroscopy results, the redshift of KUV 00311-1938 is constrained to 0.51 <= z < 0.98 and of PKS 1440-389 to 0.14 (sic) z < 0.53.}, language = {en} } @article{AbdirashidLenhard2020, author = {Abdirashid, Hashim and Lenhard, Michael}, title = {Say it with double flowers}, series = {Journal of experimental botany}, volume = {71}, journal = {Journal of experimental botany}, number = {9}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0022-0957}, doi = {10.1093/jxb/eraa109}, pages = {2469 -- 2471}, year = {2020}, abstract = {Every year, lovers world-wide rely on mutants to show their feelings on Valentine's Day. This is because many of the most popular ornamental flowering plants have been selected to form extra petals at the expense of reproductive organs to enhance their attractiveness and aesthetic value to humans. This so-called 'double flower' (DF) phenotype, first described more than 2000 years ago (Meyerowitz et al., 1989) is present, for example, in many modern roses, carnations, peonies, and camellias. Gattolin et al. (2020) now identify a unifying explanation for the molecular basis of many of these DF cultivars.}, language = {en} } @inproceedings{Abramova2020, author = {Abramova, Olga}, title = {Does a smile open all doors?}, series = {Proceedings of the 53rd Hawaii International Conference on System Sciences}, booktitle = {Proceedings of the 53rd Hawaii International Conference on System Sciences}, publisher = {HICSS Conference Office University of Hawaii at Manoa}, address = {Honolulu}, isbn = {978-0-9981331-3-3}, pages = {831 -- 840}, year = {2020}, abstract = {Online photographs govern an individual's choices across a variety of contexts. In sharing arrangements, facial appearance has been shown to affect the desire to collaborate, interest to explore a listing, and even willingness to pay for a stay. Because of the ubiquity of online images and their influence on social attitudes, it seems crucial to be able to control these aspects. The present study examines the effect of different photographic self-disclosures on the provider's perceptions and willingness to accept a potential co-sharer. The findings from our experiment in the accommodation-sharing context suggest social attraction mediates the effect of photographic self-disclosures on willingness to host. Implications of the results for IS research and practitioners are discussed.}, language = {en} } @article{AdamElsner2020, author = {Adam, Maurits and Elsner, Birgit}, title = {The impact of salient action effects on 6-, 7-, and 11-month-olds' goal-predictive gaze shifts for a human grasping action}, series = {PLOS ONE}, volume = {15}, journal = {PLOS ONE}, number = {10}, publisher = {Public Library of Science}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0240165}, pages = {18}, year = {2020}, abstract = {When infants observe a human grasping action, experience-based accounts predict that all infants familiar with grasping actions should be able to predict the goal regardless of additional agency cues such as an action effect. Cue-based accounts, however, suggest that infants use agency cues to identify and predict action goals when the action or the agent is not familiar. From these accounts, we hypothesized that younger infants would need additional agency cues such as a salient action effect to predict the goal of a human grasping action, whereas older infants should be able to predict the goal regardless of agency cues. In three experiments, we presented 6-, 7-, and 11-month-olds with videos of a manual grasping action presented either with or without an additional salient action effect (Exp. 1 and 2), or we presented 7-month-olds with videos of a mechanical claw performing a grasping action presented with a salient action effect (Exp. 3). The 6-month-olds showed tracking gaze behavior, and the 11-month-olds showed predictive gaze behavior, regardless of the action effect. However, the 7-month-olds showed predictive gaze behavior in the action-effect condition, but tracking gaze behavior in the no-action-effect condition and in the action-effect condition with a mechanical claw. The results therefore support the idea that salient action effects are especially important for infants' goal predictions from 7 months on, and that this facilitating influence of action effects is selective for the observation of human hands.}, language = {en} } @phdthesis{Adamik2020, author = {Adamik, Verena}, title = {In Search of the Utopian States of America}, series = {Palgrave Studies in Utopianism}, journal = {Palgrave Studies in Utopianism}, publisher = {Palgrave Macmillan}, address = {Cham}, isbn = {978-3-030-60278-9}, doi = {10.1007/978-3-030-60279-6}, pages = {xiii, 248}, year = {2020}, abstract = {This book endeavours to understand the seemingly direct link between utopianism and the USA, discussing novels that have never been brought together in this combination before, even though they all revolve around intentional communities: Imlay's The Emigrants (1793), Hawthorne's The Blithedale Romance (1852), Howland's Papas Own Girl (1874), Griggs's Imperium in Imperio (1899), and Du Bois's The Quest of the Silver Fleece (1911). They relate nation and utopia not by describing perfect societies, but by writing about attempts to immediately live radically different lives. Signposting the respective communal history, the readings provide a literary perspective to communal studies, and add to a deeply necessary historicization for strictly literary approaches to US utopianism, and for studies that focus on Pilgrims/Puritans/Founding Fathers as utopian practitioners. This book therefore highlights how the authors evaluated the USA's utopian potential and traces the nineteenth-century development of the utopian imagination from various perspectives.}, language = {en} } @article{AdnanMatthewsHackletal.2020, author = {Adnan, Hassan Sami and Matthews, Sam and Hackl, M. and Das, P. P. and Manaswini, Manisha and Gadamsetti, S. and Filali, Maroua and Owoyele, Babajide and Santuber, Joaqu{\´i}n and Edelman, Jonathan}, title = {Human centered AI design for clinical monitoring and data management}, series = {European journal of public health : official journal of the European Health Association}, volume = {30}, journal = {European journal of public health : official journal of the European Health Association}, number = {5}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1101-1262}, doi = {10.1093/eurpub/ckaa165.225}, pages = {V86 -- V86}, year = {2020}, abstract = {In clinical settings, significant resources are spent on data collection and monitoring patients' health parameters to improve decision-making and provide better care. With increased digitization, the healthcare sector is shifting towards implementing digital technologies for data management and in administration. New technologies offer better treatment opportunities and streamline clinical workflow, but the complexity can cause ineffectiveness, frustration, and errors. To address this, we believe digital solutions alone are not sufficient. Therefore, we take a human-centred design approach for AI development, and apply systems engineering methods to identify system leverage points. We demonstrate how automation enables monitoring clinical parameters, using existing non-intrusive sensor technology, resulting in more resources toward patient care. Furthermore, we provide a framework on digitization of clinical data for integration with data management.}, language = {en} } @article{AdnanSrsicVenticichetal.2020, author = {Adnan, Hassan Sami and Srsic, Amanda and Venticich, Pete Milos and Townend, David M.R.}, title = {Using AI for mental health analysis and prediction in school surveys}, series = {European journal of public health}, volume = {30}, journal = {European journal of public health}, publisher = {Oxford Univ. Press}, address = {Oxford [u.a.]}, issn = {1101-1262}, doi = {10.1093/eurpub/ckaa165.336}, pages = {V125 -- V125}, year = {2020}, abstract = {Background: Childhood and adolescence are critical stages of life for mental health and well-being. Schools are a key setting for mental health promotion and illness prevention. One in five children and adolescents have a mental disorder, about half of mental disorders beginning before the age of 14. Beneficial and explainable artificial intelligence can replace current paper- based and online approaches to school mental health surveys. This can enhance data acquisition, interoperability, data driven analysis, trust and compliance. This paper presents a model for using chatbots for non-obtrusive data collection and supervised machine learning models for data analysis; and discusses ethical considerations pertaining to the use of these models. Methods: For data acquisition, the proposed model uses chatbots which interact with students. The conversation log acts as the source of raw data for the machine learning. Pre-processing of the data is automated by filtering for keywords and phrases. Existing survey results, obtained through current paper-based data collection methods, are evaluated by domain experts (health professionals). These can be used to create a test dataset to validate the machine learning models. Supervised learning can then be deployed to classify specific behaviour and mental health patterns. Results: We present a model that can be used to improve upon current paper-based data collection and manual data analysis methods. An open-source GitHub repository contains necessary tools and components of this model. Privacy is respected through rigorous observance of confidentiality and data protection requirements. Critical reflection on these ethics and law aspects is included in the project. Conclusions: This model strengthens mental health surveillance in schools. The same tools and components could be applied to other public health data. Future extensions of this model could also incorporate unsupervised learning to find clusters and patterns of unknown effects.}, language = {en} } @article{AgaBarfknechtHallahanGottmannetal.2020, author = {Aga-Barfknecht, Heja and Hallahan, Nicole and Gottmann, Pascal and J{\"a}hnert, Markus and Osburg, Sophie and Schulze, Gunnar and Kamitz, Anne and Arends, Danny and Brockmann, Gudrun and Schallschmidt, Tanja and Lebek, Sandra and Chadt, Alexandra and Al-Hasani, Hadi and Joost, Hans-Georg and Sch{\"u}rmann, Annette and Vogel, Heike}, title = {Identification of novel potential type 2 diabetes genes mediating beta-cell loss and hyperglycemia using positional cloning}, series = {Frontiers in genetics}, volume = {11}, journal = {Frontiers in genetics}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {1664-8021}, doi = {10.3389/fgene.2020.567191}, pages = {11}, year = {2020}, abstract = {Type 2 diabetes (T2D) is a complex metabolic disease regulated by an interaction of genetic predisposition and environmental factors. To understand the genetic contribution in the development of diabetes, mice varying in their disease susceptibility were crossed with the obese and diabetes-prone New Zealand obese (NZO) mouse. Subsequent whole-genome sequence scans revealed one major quantitative trait loci (QTL),Nidd/DBAon chromosome 4, linked to elevated blood glucose and reduced plasma insulin and low levels of pancreatic insulin. Phenotypical characterization of congenic mice carrying 13.6 Mbp of the critical fragment of DBA mice displayed severe hyperglycemia and impaired glucose clearance at week 10, decreased glucose response in week 13, and loss of beta-cells and pancreatic insulin in week 16. To identify the responsible gene variant(s), further congenic mice were generated and phenotyped, which resulted in a fragment of 3.3 Mbp that was sufficient to induce hyperglycemia. By combining transcriptome analysis and haplotype mapping, the number of putative responsible variant(s) was narrowed from initial 284 to 18 genes, including gene models and non-coding RNAs. Consideration of haplotype blocks reduced the number of candidate genes to four (Kti12,Osbpl9,Ttc39a, andCalr4) as potential T2D candidates as they display a differential expression in pancreatic islets and/or sequence variation. In conclusion, the integration of comparative analysis of multiple inbred populations such as haplotype mapping, transcriptomics, and sequence data substantially improved the mapping resolution of the diabetes QTLNidd/DBA. Future studies are necessary to understand the exact role of the different candidates in beta-cell function and their contribution in maintaining glycemic control.}, language = {en} } @article{AgarwalMarwanMaheswaranetal.2020, author = {Agarwal, Ankit and Marwan, Norbert and Maheswaran, Rathinasamy and {\"O}zt{\"u}rk, Ugur and Kurths, J{\"u}rgen and Merz, Bruno}, title = {Optimal design of hydrometric station networks based on complex network analysis}, series = {Hydrology and Earth System Sciences}, volume = {24}, journal = {Hydrology and Earth System Sciences}, number = {5}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-24-2235-2020}, pages = {2235 -- 2251}, year = {2020}, abstract = {Hydrometric networks play a vital role in providing information for decision-making in water resource management. They should be set up optimally to provide as much information as possible that is as accurate as possible and, at the same time, be cost-effective. Although the design of hydrometric networks is a well-identified problem in hydrometeorology and has received considerable attention, there is still scope for further advancement. In this study, we use complex network analysis, defined as a collection of nodes interconnected by links, to propose a new measure that identifies critical nodes of station networks. The approach can support the design and redesign of hydrometric station networks. The science of complex networks is a relatively young field and has gained significant momentum over the last few years in different areas such as brain networks, social networks, technological networks, or climate networks. The identification of influential nodes in complex networks is an important field of research. We propose a new node-ranking measure - the weighted degree-betweenness (WDB) measure - to evaluate the importance of nodes in a network. It is compared to previously proposed measures used on synthetic sample networks and then applied to a real-world rain gauge network comprising 1229 stations across Germany to demonstrate its applicability. The proposed measure is evaluated using the decline rate of the network efficiency and the kriging error. The results suggest that WDB effectively quantifies the importance of rain gauges, although the benefits of the method need to be investigated in more detail.}, language = {en} } @misc{AgarwalMarwanMaheswaranetal.2020, author = {Agarwal, Ankit and Marwan, Norbert and Maheswaran, Rathinasamy and {\"O}zt{\"u}rk, Ugur and Kurths, J{\"u}rgen and Merz, Bruno}, title = {Optimal design of hydrometric station networks based on complex network analysis}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {951}, issn = {1866-8372}, doi = {10.25932/publishup-47100}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471006}, pages = {19}, year = {2020}, abstract = {Hydrometric networks play a vital role in providing information for decision-making in water resource management. They should be set up optimally to provide as much information as possible that is as accurate as possible and, at the same time, be cost-effective. Although the design of hydrometric networks is a well-identified problem in hydrometeorology and has received considerable attention, there is still scope for further advancement. In this study, we use complex network analysis, defined as a collection of nodes interconnected by links, to propose a new measure that identifies critical nodes of station networks. The approach can support the design and redesign of hydrometric station networks. The science of complex networks is a relatively young field and has gained significant momentum over the last few years in different areas such as brain networks, social networks, technological networks, or climate networks. The identification of influential nodes in complex networks is an important field of research. We propose a new node-ranking measure - the weighted degree-betweenness (WDB) measure - to evaluate the importance of nodes in a network. It is compared to previously proposed measures used on synthetic sample networks and then applied to a real-world rain gauge network comprising 1229 stations across Germany to demonstrate its applicability. The proposed measure is evaluated using the decline rate of the network efficiency and the kriging error. The results suggest that WDB effectively quantifies the importance of rain gauges, although the benefits of the method need to be investigated in more detail.}, language = {en} } @techreport{AharonBrillFonsecaetal.2020, type = {Working Paper}, author = {Aharon, Itzik and Brill, Antonia and Fonseca, Philip and Vandchali, Azin Alizadeh and Wendel, Nina}, title = {The Protection of Women Human Rights Defenders and their Collective Actions}, series = {Staat, Recht und Politik - Forschungs- und Diskussionspapiere}, journal = {Staat, Recht und Politik - Forschungs- und Diskussionspapiere}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, doi = {10.25932/publishup-44427}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-444278}, pages = {12}, year = {2020}, abstract = {This paper evaluates the construction of the rights of human rights defenders within international law and its shortcomings in protecting women. Human rights defenders have historically been defined on the basis of their actions as defenders. However, as Marxist-feminist scholar Silvia Federici contends, women are inherently politicised and, moreover, face obstacles to political action which are invisible to and untouchable by the law. Labour rights set an example of handling such a disadvantaged political position by placing vital importance on workers' right to association and collective action. The paper closes with the suggestion that transposing this construction of rights to women would better protect women as human rights defenders while emphasising their capacity for self-determination in their political actions.}, language = {en} } @article{AlNajiSchlaadAntonietti2020, author = {Al-Naji, Majd and Schlaad, Helmut and Antonietti, Markus}, title = {New (and old) monomers from biorefineries to make polymer chemistry more sustainable}, series = {Macromolecular rapid communications}, volume = {42}, journal = {Macromolecular rapid communications}, number = {3}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1022-1336}, doi = {10.1002/marc.202000485}, pages = {11}, year = {2020}, abstract = {This opinion article describes recent approaches to use the "biorefinery" concept to lower the carbon footprint of typical mass polymers, by replacing parts of the fossil monomers with similar or even the same monomer made from regrowing dendritic biomass. Herein, the new and green catalytic synthetic routes are for lactic acid (LA), isosorbide (IS), 2,5-furandicarboxylic acid (FDCA), and p-xylene (pXL). Furthermore, the synthesis of two unconventional lignocellulosic biomass derivable monomers, i.e., alpha-methylene-gamma-valerolactone (MeGVL) and levoglucosenol (LG), are presented. All those have the potential to enter in a cost-effective way, also the mass market and thereby recover lost areas for polymer materials. The differences of catalytic unit operations of the biorefinery are also discussed and the challenges that must be addressed along the synthesis path of each monomers.}, language = {en} } @misc{AlNajiSchlaadAntonietti2020, author = {Al-Naji, Majd and Schlaad, Helmut and Antonietti, Markus}, title = {New (and old) monomers from biorefineries to make polymer chemistry more sustainable}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {3}, issn = {1866-8372}, doi = {10.25932/publishup-57061}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-570614}, pages = {13}, year = {2020}, abstract = {This opinion article describes recent approaches to use the "biorefinery" concept to lower the carbon footprint of typical mass polymers, by replacing parts of the fossil monomers with similar or even the same monomer made from regrowing dendritic biomass. Herein, the new and green catalytic synthetic routes are for lactic acid (LA), isosorbide (IS), 2,5-furandicarboxylic acid (FDCA), and p-xylene (pXL). Furthermore, the synthesis of two unconventional lignocellulosic biomass derivable monomers, i.e., alpha-methylene-gamma-valerolactone (MeGVL) and levoglucosenol (LG), are presented. All those have the potential to enter in a cost-effective way, also the mass market and thereby recover lost areas for polymer materials. The differences of catalytic unit operations of the biorefinery are also discussed and the challenges that must be addressed along the synthesis path of each monomers.}, language = {en} } @phdthesis{ALRawi2020, author = {AL-Rawi, Shadha}, title = {Biochemical studies to determine the role of Early Starvation 1 (ESV1) protein and its homologue Like-Early Starvation 1 (LESV) during starch degradation}, doi = {10.25932/publishup-48395}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-483956}, school = {Universit{\"a}t Potsdam}, pages = {215}, year = {2020}, abstract = {Depending on the biochemical and biotechnical approach, the aim of this work was to understand the mechanism of protein-glucan interactions in regulation and control of starch degradation. Although starch degradation starts with the phosphorylation process, the mechanisms by which this process is controlling and adjusting starch degradation are not yet fully understood. Phosphorylation is a major process performed by the two dikinases enzymes α-glucan, water dikinase (GWD) and phosphoglucan water dikinase (PWD). GWD and PWD enzymes phosphorylate the starch granule surface; thereby stimulate starch degradation by hydrolytic enzymes. Despite these important roles for GWD and PWD, so far the biochemical processes by which these enzymes are able to regulate and adjust the rate of phosphate incorporation into starch during the degradation process haven't been understood. Recently, some proteins were found associated with the starch granule. Two of these proteins are named Early Starvation Protein 1 (ESV1) and its homologue Like-Early Starvation Protein 1 (LESV). It was supposed that both are involved in the control of starch degradation, but their function has not been clearly known until now. To understand how ESV1 and LESV-glucan interactions are regulated and affect the starch breakdown, it was analyzed the influence of ESV1 and LESV proteins on the phosphorylating enzyme GWD and PWD and hydrolysing enzymes ISA, BAM, and AMY. However, the analysis determined the location of LESV and ESV1 in the chloroplast stroma of Arabidopsis. Mass spectrometry data predicted ESV1and LESV proteins as a product of the At1g42430 and At3g55760 genes with a predicted mass of ~50 kDa and ~66 kDa, respectively. The ChloroP program predicted that ESV1 lacks the chloroplast transit peptide, but it predicted the first 56 amino acids N-terminal region as a chloroplast transit peptide for LESV. Usually, the transit peptide is processed during transport of the proteins into plastids. Given that this processing is critical, two forms of each ESV1 and LESV were generated and purified, a full-length form and a truncated form that lacks the transit peptide, namely, (ESV1and tESV1) and (LESV and tLESV), respectively. Both protein forms were included in the analysis assays, but only slight differences in glucan binding and protein action between ESV1 and tESV1 were observed, while no differences in the glucan binding and effect on the GWD and PWD action were observed between LESV and tLESV. The results revealed that the presence of the N-terminal is not massively altering the action of ESV1 or LESV. Therefore, it was only used the ESV1 and tLESV forms data to explain the function of both proteins. However, the analysis of the results revealed that LESV and ESV1 proteins bind strongly at the starch granule surface. Furthermore, not all of both proteins were released after their incubation with starches after washing the granules with 2\% [w/v] SDS indicates to their binding to the deeper layers of the granule surface. Supporting of this finding comes after the binding of both proteins to starches after removing the free glucans chains from the surface by the action of ISA and BAM. Although both proteins are capable of binding to the starch structure, only LESV showed binding to amylose, while in ESV1, binding was not observed. The alteration of glucan structures at the starch granule surface is essential for the incorporation of phosphate into starch granule while the phosphorylation of starch by GWD and PWD increased after removing the free glucan chains by ISA. Furthermore, PWD showed the possibility of starch phosphorylation without prephosphorylation by GWD. Biochemical studies on protein-glucan interactions between LESV or ESV1 with different types of starch showed a potentially important mechanism of regulating and adjusting the phosphorylation process while the binding of LESV and ESV1 leads to altering the glucan structures of starches, hence, render the effect of the action of dikinases enzymes (GWD and PWD) more able to control the rate of starch degradation. Despite the presence of ESV1 which revealed an antagonistic effect on the PWD action as the PWD action was decreased without prephosphorylation by GWD and increased after prephosphorylation by GWD (Chapter 4), PWD showed a significant reduction in its action with or without prephosphorylation by GWD in the presence of ESV1 whether separately or together with LESV (Chapter 5). However, the presence of LESV and ESV1 together revealed the same effect compared to the effect of each one alone on the phosphorylation process, therefore it is difficult to distinguish the specific function between them. However, non-interactions were detected between LESV and ESV1 or between each of them with GWD and PWD or between GWD and PWD indicating the independent work for these proteins. It was also observed that the alteration of the starch structure by LESV and ESV1 plays a role in adjusting starch degradation rates not only by affecting the dikinases but also by affecting some of the hydrolysing enzymes since it was found that the presence of LESV and ESV1leads to the reduction of the action of BAM, but does not abolish it.}, language = {en} } @article{AlSaedyTarchanov2020, author = {Al-Saedy, Ammar Jaffar Muhesin and Tarchanov, Nikolaj Nikolaevič}, title = {A degree theory for Lagrangian boundary value problems}, series = {Žurnal Sibirskogo Federalʹnogo Universiteta = Journal of Siberian Federal University; mathematics \& physics}, volume = {13}, journal = {Žurnal Sibirskogo Federalʹnogo Universiteta = Journal of Siberian Federal University; mathematics \& physics}, number = {1}, publisher = {Sibirskij Federalʹnyj Universitet}, address = {Krasnojarsk}, issn = {1997-1397}, doi = {10.17516/1997-1397-2020-13-1-5-25}, pages = {5 -- 25}, year = {2020}, abstract = {We study those nonlinear partial differential equations which appear as Euler-Lagrange equations of variational problems. On defining weak boundary values of solutions to such equations we initiate the theory of Lagrangian boundary value problems in spaces of appropriate smoothness. We also analyse if the concept of mapping degree of current importance applies to Lagrangian problems.}, language = {en} } @misc{AlbertOwolabiGebeletal.2020, author = {Albert, Justin Amadeus and Owolabi, Victor and Gebel, Arnd and Brahms, Clemens Markus and Granacher, Urs and Arnrich, Bert}, title = {Evaluation of the Pose Tracking Performance of the Azure Kinect and Kinect v2 for Gait Analysis in Comparison with a Gold Standard}, series = {Postprints der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, journal = {Postprints der Universit{\"a}t Potsdam : Reihe der Digital Engineering Fakult{\"a}t}, number = {3}, doi = {10.25932/publishup-48413}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-484130}, pages = {24}, year = {2020}, abstract = {Gait analysis is an important tool for the early detection of neurological diseases and for the assessment of risk of falling in elderly people. The availability of low-cost camera hardware on the market today and recent advances in Machine Learning enable a wide range of clinical and health-related applications, such as patient monitoring or exercise recognition at home. In this study, we evaluated the motion tracking performance of the latest generation of the Microsoft Kinect camera, Azure Kinect, compared to its predecessor Kinect v2 in terms of treadmill walking using a gold standard Vicon multi-camera motion capturing system and the 39 marker Plug-in Gait model. Five young and healthy subjects walked on a treadmill at three different velocities while data were recorded simultaneously with all three camera systems. An easy-to-administer camera calibration method developed here was used to spatially align the 3D skeleton data from both Kinect cameras and the Vicon system. With this calibration, the spatial agreement of joint positions between the two Kinect cameras and the reference system was evaluated. In addition, we compared the accuracy of certain spatio-temporal gait parameters, i.e., step length, step time, step width, and stride time calculated from the Kinect data, with the gold standard system. Our results showed that the improved hardware and the motion tracking algorithm of the Azure Kinect camera led to a significantly higher accuracy of the spatial gait parameters than the predecessor Kinect v2, while no significant differences were found between the temporal parameters. Furthermore, we explain in detail how this experimental setup could be used to continuously monitor the progress during gait rehabilitation in older people.}, language = {en} } @article{AlbertOwolabiGebeletal.2020, author = {Albert, Justin Amadeus and Owolabi, Victor and Gebel, Arnd and Brahms, Clemens Markus and Granacher, Urs and Arnrich, Bert}, title = {Evaluation of the Pose Tracking Performance of the Azure Kinect and Kinect v2 for Gait Analysis in Comparison with a Gold Standard}, series = {Sensors}, volume = {20}, journal = {Sensors}, number = {18}, publisher = {MDPI}, address = {Basel}, issn = {1424-8220}, doi = {10.3390/s20185104}, pages = {22}, year = {2020}, abstract = {Gait analysis is an important tool for the early detection of neurological diseases and for the assessment of risk of falling in elderly people. The availability of low-cost camera hardware on the market today and recent advances in Machine Learning enable a wide range of clinical and health-related applications, such as patient monitoring or exercise recognition at home. In this study, we evaluated the motion tracking performance of the latest generation of the Microsoft Kinect camera, Azure Kinect, compared to its predecessor Kinect v2 in terms of treadmill walking using a gold standard Vicon multi-camera motion capturing system and the 39 marker Plug-in Gait model. Five young and healthy subjects walked on a treadmill at three different velocities while data were recorded simultaneously with all three camera systems. An easy-to-administer camera calibration method developed here was used to spatially align the 3D skeleton data from both Kinect cameras and the Vicon system. With this calibration, the spatial agreement of joint positions between the two Kinect cameras and the reference system was evaluated. In addition, we compared the accuracy of certain spatio-temporal gait parameters, i.e., step length, step time, step width, and stride time calculated from the Kinect data, with the gold standard system. Our results showed that the improved hardware and the motion tracking algorithm of the Azure Kinect camera led to a significantly higher accuracy of the spatial gait parameters than the predecessor Kinect v2, while no significant differences were found between the temporal parameters. Furthermore, we explain in detail how this experimental setup could be used to continuously monitor the progress during gait rehabilitation in older people.}, language = {en} } @article{AlbrechtWinkelmannLevermann2020, author = {Albrecht, Torsten and Winkelmann, Ricarda and Levermann, Anders}, title = {Glacial-cycle simulations of the Antarctic Ice Sheet with the Parallel Ice Sheet Model (PISM)}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {14}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {2}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-14-633-2020}, pages = {633 -- 656}, year = {2020}, abstract = {The Parallel Ice Sheet Model (PISM) is applied to the Antarctic Ice Sheet over the last two glacial cycles (approximate to 210 000 years) with a resolution of 16 km. An ensemble of 256 model runs is analyzed in which four relevant model parameters have been systematically varied using full-factorial parameter sampling. Parameters and plausible parameter ranges have been identified in a companion paper (Albrecht et al., 2020) and are associated with ice dynamics, climatic forcing, basal sliding and bed deformation and represent distinct classes of model uncertainties. The model is scored against both modern and geologic data, including reconstructed grounding-line locations, elevation-age data, ice thickness, surface velocities and uplift rates. An aggregated score is computed for each ensemble member that measures the overall model-data misfit, including measurement uncertainty in terms of a Gaussian error model (Briggs and Tarasov, 2013). The statistical method used to analyze the ensemble simulation results follows closely the simple averaging method described in Pollard et al. (2016). This analysis reveals clusters of best-fit parameter combinations, and hence a likely range of relevant model and boundary parameters, rather than individual best-fit parameters. The ensemble of reconstructed histories of Antarctic Ice Sheet volumes provides a score-weighted likely range of sea-level contributions since the Last Glacial Maximum (LGM) of 9.4 +/- 4.1m (or 6.5 +/- 2.0 x 10(6) km(3)), which is at the upper range of most previous studies. The last deglaciation occurs in all ensemble simulations after around 12 000 years before present and hence after the meltwater pulse 1A (MWP1a). Our ensemble analysis also provides an estimate of parametric uncertainty bounds for the present-day state that can be used for PISM projections of future sea-level contributions from the Antarctic Ice Sheet.}, language = {en} } @article{AlbrechtWinkelmannLevermann2020, author = {Albrecht, Torsten and Winkelmann, Ricarda and Levermann, Anders}, title = {Glacial-cycle simulations of the Antarctic Ice Sheet with the Parallel Ice Sheet Model (PISM)}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {14}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {2}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-14-599-2020}, pages = {599 -- 632}, year = {2020}, abstract = {Simulations of the glacial-interglacial history of the Antarctic Ice Sheet provide insights into dynamic threshold behavior and estimates of the ice sheet's contributions to global sea-level changes for the past, present and future. However, boundary conditions are weakly constrained, in particular at the interface of the ice sheet and the bedrock. Also climatic forcing covering the last glacial cycles is uncertain, as it is based on sparse proxy data.
We use the Parallel Ice Sheet Model (PISM) to investigate the dynamic effects of different choices of input data, e.g., for modern basal heat flux or reconstructions of past changes of sea level and surface temperature. As computational resources are limited, glacial-cycle simulations are performed using a comparably coarse model grid of 16 km and various parameterizations, e.g., for basal sliding, iceberg calving, or for past variations in precipitation and ocean temperatures. In this study we evaluate the model's transient sensitivity to corresponding parameter choices and to different boundary conditions over the last two glacial cycles and provide estimates of involved uncertainties. We also discuss isolated and combined effects of climate and sea-level forcing. Hence, this study serves as a "cookbook" for the growing community of PISM users and paleo-ice sheet modelers in general.
For each of the different model uncertainties with regard to climatic forcing, ice and Earth dynamics, and basal processes, we select one representative model parameter that captures relevant uncertainties and motivates corresponding parameter ranges that bound the observed ice volume at present. The four selected parameters are systematically varied in a parameter ensemble analysis, which is described in a companion paper.}, language = {en} } @article{AldiyarovSokolovAkylbayevaetal.2020, author = {Aldiyarov, Abdurakhman and Sokolov, Dmitriy and Akylbayeva, Aigerim and Nurmukan, Assel and Tokmoldin, Nurlan}, title = {On thermal stability of cryovacuum deposited CH4+H2O films}, series = {Low temperature physics}, volume = {46}, journal = {Low temperature physics}, number = {11}, publisher = {American Institute of Physics}, address = {Melville}, issn = {1063-777X}, doi = {10.1063/10.0002156}, pages = {1121 -- 1124}, year = {2020}, abstract = {Whereas stable homogenous states of aqueous hydrocarbon solutions are typically observed at high temperatures and pressures far beyond the critical values corresponding to individual components, the stability of such system may be preserved upon transition into the region of metastable states at low temperatures and low pressures. This work is dedicated to the study of the thermal stability of a water-methane mixture formed by cryogenic vapor phase deposition. The obtained thin films were studied using vibrational spectroscopy in the temperature range of 16-180 K. During thermal annealing of the samples, characteristic vibrational C-H modes of methane were monitored alongside the chamber pressure to register both structural changes and desorption of the film material. The obtained results reveal that upon the co-deposition of methane and water, methane molecules appear both in non-bound and trapped states. The observed broadening of the characteristic C-H stretching mode at 3010 cm(-1) upon an increase in temperature of the sample from 16 to 90 K, followed by narrowing of the peak as the temperature is reduced back to 16 K, indicates localization of methane molecules within the water matrix at lower temperatures.}, language = {en} } @article{AlexoudiMallonnKelesetal.2020, author = {Alexoudi, Xanthippi and Mallonn, Matthias and Keles, Engin and Poppenh{\"a}ger, Katja and von Essen, Carolina and Strassmeier, Klaus}, title = {Role of the impact parameter in exoplanet transmission spectroscopy}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {640}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/202038080}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-605378}, pages = {9}, year = {2020}, abstract = {Context Transmission spectroscopy is a promising tool for the atmospheric characterization of transiting exoplanets. Because the planetary signal is faint, discrepancies have been reported regarding individual targets. Aims We investigate the dependence of the estimated transmission spectrum on deviations of the orbital parameters of the star-planet system that are due to the limb-darkening effects of the host star. We describe how the uncertainty on the orbital parameters translates into an uncertainty on the planetary spectral slope. Methods We created synthetic transit light curves in seven different wavelength bands, from the near-ultraviolet to the near-infrared, and fit them with transit models parameterized by fixed deviating values of the impact parameter b. First, we performed a qualitative study to illustrate the effect by presenting the changes in the transmission spectrum slope with different deviations of b. Then, we quantified these variations by creating an error envelope (for centrally transiting, off-center, and grazing systems) based on a derived typical uncertainty on b from the literature. Finally, we compared the variations in the transmission spectra for different spectral types of host stars. Results Our simulations show a wavelength-dependent offset that is more pronounced at the blue wavelengths where the limb-darkening effect is stronger. This offset introduces a slope in the planetary transmission spectrum that becomes steeper with increasing b values. Variations of b by positive or negative values within its uncertainty interval introduce positive or negative slopes, thus the formation of an error envelope. The amplitude from blue optical to near-infrared wavelength for a typical uncertainty on b corresponds to one atmospheric pressure scale height and more. This impact parameter degeneracy is confirmed for different host types; K stars present prominently steeper slopes, while M stars indicate features at the blue wavelengths. Conclusions We demonstrate that transmission spectra can be hard to interpret, basically because of the limitations in defining a precise impact parameter value for a transiting exoplanet. This consequently limits a characterization of its atmosphere.}, language = {en} } @phdthesis{Alirezaeizanjani2020, author = {Alirezaeizanjani, Zahra}, title = {Movement strategies of a multi-mode bacterial swimmer}, doi = {10.25932/publishup-47580}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-475806}, school = {Universit{\"a}t Potsdam}, pages = {xix, 111}, year = {2020}, abstract = {Bacteria are one of the most widespread kinds of microorganisms that play essential roles in many biological and ecological processes. Bacteria live either as independent individuals or in organized communities. At the level of single cells, interactions between bacteria, their neighbors, and the surrounding physical and chemical environment are the foundations of microbial processes. Modern microscopy imaging techniques provide attractive and promising means to study the impact of these interactions on the dynamics of bacteria. The aim of this dissertation is to deepen our understanding four fundamental bacterial processes - single-cell motility, chemotaxis, bacterial interactions with environmental constraints, and their communication with neighbors - through a live cell imaging technique. By exploring these processes, we expanded our knowledge on so far unexplained mechanisms of bacterial interactions. Firstly, we studied the motility of the soil bacterium Pseudomonas putida (P. putida), which swims through flagella propulsion, and has a complex, multi-mode swimming tactic. It was recently reported that P. putida exhibits several distinct swimming modes - the flagella can push and pull the cell body or wrap around it. Using a new combined phase-contrast and fluorescence imaging set-up, the swimming mode (push, pull, or wrapped) of each run phase was automatically recorded, which provided the full swimming statistics of the multi-mode swimmer. Furthermore, the investigation of cell interactions with a solid boundary illustrated an asymmetry for the different swimming modes; in contrast to the push and pull modes, the curvature of runs in wrapped mode was not affected by the solid boundary. This finding suggested that having a multi-mode swimming strategy may provide further versatility to react to environmental constraints. Then we determined how P. putida navigates toward chemoattractants, i.e. its chemotaxis strategies. We found that individual run modes show distinct chemotactic responses in nutrition gradients. In particular, P. putida cells exhibited an asymmetry in their chemotactic responsiveness; the wrapped mode (slow swimming mode) was affected by the chemoattractant, whereas the push mode (fast swimming mode) was not. These results can be seen as a starting point to understand more complex chemotaxis strategies of multi-mode swimmers going beyond the well-known paradigm of Escherichia coli, that exhibits only one swimming mode. Finally we considered the cell dynamics in a dense population. Besides physical interactions with their neighbors, cells communicate their activities and orchestrate their population behaviors via quorum-sensing. Molecules that are secreted to the surrounding by the bacterial cells, act as signals and regulate the cell population behaviour. We studied P. putida's motility in a dense population by exposing the cells to environments with different concentrations of chemical signals. We found that higher amounts of chemical signals in the surrounding influenced the single-cell behaviourr, suggesting that cell-cell communications may also affect the flagellar dynamics. In summary, this dissertation studies the dynamics of a bacterium with a multi-mode swimming tactic and how it is affected by the surrounding environment using microscopy imaging. The detailed description of the bacterial motility in fundamental bacterial processes can provide new insights into the ecology of microorganisms.}, language = {en} } @misc{AlirezaeizanjaniGrossmannPfeiferetal.2020, author = {Alirezaeizanjani, Zahra and Großmann, Robert and Pfeifer, Veronika and Hintsche, Marius and Beta, Carsten}, title = {Chemotaxis strategies of bacteria with multiple run modes}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {22}, issn = {1866-8372}, doi = {10.25932/publishup-51909}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-519098}, pages = {10}, year = {2020}, abstract = {Bacterial chemotaxis-a fundamental example of directional navigation in the living world-is key to many biological processes, including the spreading of bacterial infections. Many bacterial species were recently reported to exhibit several distinct swimming modes-the flagella may, for example, push the cell body or wrap around it. How do the different run modes shape the chemotaxis strategy of a multimode swimmer? Here, we investigate chemotactic motion of the soil bacterium Pseudomonas putida as a model organism. By simultaneously tracking the position of the cell body and the configuration of its flagella, we demonstrate that individual run modes show different chemotactic responses in nutrition gradients and, thus, constitute distinct behavioral states. On the basis of an active particle model, we demonstrate that switching between multiple run states that differ in their speed and responsiveness provides the basis for robust and efficient chemotaxis in complex natural habitats.}, language = {en} } @article{AlirezaeizanjaniGrossmannPfeiferetal.2020, author = {Alirezaeizanjani, Zahra and Großmann, Robert and Pfeifer, Veronika and Hintsche, Marius and Beta, Carsten}, title = {Chemotaxis strategies of bacteria with multiple run modes}, series = {Science advances}, volume = {6}, journal = {Science advances}, number = {22}, publisher = {American Association for the Advancement of Science}, address = {Washington}, issn = {2375-2548}, doi = {10.1126/sciadv.aaz6153}, pages = {8}, year = {2020}, abstract = {Bacterial chemotaxis-a fundamental example of directional navigation in the living world-is key to many biological processes, including the spreading of bacterial infections. Many bacterial species were recently reported to exhibit several distinct swimming modes-the flagella may, for example, push the cell body or wrap around it. How do the different run modes shape the chemotaxis strategy of a multimode swimmer? Here, we investigate chemotactic motion of the soil bacterium Pseudomonas putida as a model organism. By simultaneously tracking the position of the cell body and the configuration of its flagella, we demonstrate that individual run modes show different chemotactic responses in nutrition gradients and, thus, constitute distinct behavioral states. On the basis of an active particle model, we demonstrate that switching between multiple run states that differ in their speed and responsiveness provides the basis for robust and efficient chemotaxis in complex natural habitats.}, language = {en} } @article{AllroggenBeiterTronicke2020, author = {Allroggen, Niklas and Beiter, Daniel and Tronicke, Jens}, title = {Ground-penetrating radar monitoring of fast subsurface processes}, series = {Geophysics}, volume = {85}, journal = {Geophysics}, number = {3}, publisher = {Society of Exploration Geophysicists}, address = {Tulsa}, issn = {0016-8033}, doi = {10.1190/GEO2019-0737.1}, pages = {A19 -- A23}, year = {2020}, abstract = {Earth and environmental sciences rely on detailed information about subsurface processes. Whereas geophysical techniques typically provide highly resolved spatial images, monitoring subsurface processes is often associated with enormous effort and, therefore, is usually limited to point information in time or space. Thus, the development of spatial and temporal continuous field monitoring methods is a major challenge for the understanding of subsurface processes. We have developed a novel method for ground-penetrating-radar (GPR) reflection monitoring of subsurface flow processes under unsaturated conditions and applied it to a hydrological infiltration experiment performed across a periglacial slope deposit in northwest Luxembourg. Our approach relies on a spatial and temporal quasicontinuous data recording and processing, followed by an attribute analysis based on analyzing differences between individual time steps. The results demonstrate the ability of time-lapse GPR monitoring to visualize the spatial and temporal dynamics of preferential flow processes with a spatial resolution in the order of a few decimeters and temporal resolution in the order of a few minutes. We observe excellent agreement with water table information originating from different boreholes. This demonstrates the potential of surface-based GPR reflection monitoring to observe the spatiotemporal dynamics of water movements in the subsurface. It provides valuable, and so far not accessible, information for example in the field of hydrology and pedology that allows studying the actual subsurface processes rather than deducing them from point information.}, language = {en} } @phdthesis{Amaechi2020, author = {Amaechi, Mary Chimaobi}, title = {A'-movement dependencies and their reflexes in Igbo}, doi = {10.25932/publishup-47152}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471524}, school = {Universit{\"a}t Potsdam}, pages = {i, 195}, year = {2020}, abstract = {In this thesis, I examine different A-bar movement dependencies in Igbo, a Benue-Congo language spoken in southern Nigeria. Movement dependencies are found in constructions where an element is moved to the left edge of the clause to express information-structural categories such as in questions, relativization and focus. I show that these constructions in Igbo are very uniform from a syntactic point of view. The constructions are built on two basic fronting operations: relativization and focus movement, and are biclausal. I further investigate several morphophonological effects that are found in these A-bar constructions. I propose that these effects are reflexes of movement that are triggered when an element is moved overtly in relativization or focus. This proposal helps to explain the tone patterns that have previously been assumed to be a property of relative clauses. The thesis adds to the growing body of tonal reflexes of A-bar movement reported for a few African languages. The thesis also provides an insight into the complementizer domain (C-domain) of Igbo.}, language = {en} } @article{AmaechiGeorgi2020, author = {Amaechi, Mary Chimaobi and Georgi, Doreen}, title = {On optional wh-/focus fronting in Igbo}, series = {Zeitschrift f{\"u}r Sprachwissenschaft}, volume = {39}, journal = {Zeitschrift f{\"u}r Sprachwissenschaft}, number = {3}, publisher = {De Gruyter}, address = {Berlin}, issn = {0721-9067}, doi = {10.1515/zfs-2020-2017}, pages = {299 -- 327}, year = {2020}, abstract = {This paper discusses surface optionality in focus fronting in the Benue-Congo language Igbo. A focused XP can occur in-situ or ex-situ. We argue that the optionality does not have its origins in the syntax: in fact, exactly one focused XP has to move to the designated focus position in the left periphery in the syntax. The alternation between in-situ and ex-situ rather arises at PF: either the lowest or the topmost copy of the focus chain is pronounced. The choice is determined by semantic-pragmatic factors, i. e., we see an interaction between PF and LF. This constitutes a challenge for a strict version of the Y-model of grammar.}, language = {en} } @article{AmenNagelHedtetal.2020, author = {Amen, Rahma and Nagel, Rebecca and Hedt, Maximilian and Kirschbaum, Frank and Tiedemann, Ralph}, title = {Morphological differentiation in African weakly electric fish (genus Campylomormyrus) relates to substrate preferences}, series = {Evolutionary Ecology}, volume = {34}, journal = {Evolutionary Ecology}, number = {3}, publisher = {Springer Science}, address = {Dordrecht}, issn = {0269-7653}, doi = {10.1007/s10682-020-10043-3}, pages = {427 -- 437}, year = {2020}, abstract = {Under an ecological speciation scenario, the radiation of African weakly electric fish (genus Campylomormyrus) is caused by an adaptation to different food sources, associated with diversification of the electric organ discharge (EOD). This study experimentally investigates a phenotype-environment correlation to further support this scenario. Our behavioural experiments showed that three sympatric Campylomormyrus species with significantly divergent snout morphology differentially react to variation in substrate structure. While the short snout species (C. tamandua) exhibits preference to sandy substrate, the long snout species (C. rhynchophorus) significantly prefers a stone substrate for feeding. A third species with intermediate snout size (C. compressirostris) does not exhibit any substrate preference. This preference is matched with the observation that long-snouted specimens probe deeper into the stone substrate, presumably enabling them to reach prey more distant to the substrate surface. These findings suggest that the diverse feeding apparatus in the genus Campylomormyrus may have evolved in adaptation to specific microhabitats, i.e., substrate structures where these fish forage. Whether the parallel divergence in EOD is functionally related to this adaptation or solely serves as a prezygotic isolation mechanism remains to be elucidated.}, language = {en} } @misc{AmenNagelHedtetal.2020, author = {Amen, Rahma and Nagel, Rebecca and Hedt, Maximilian and Kirschbaum, Frank and Tiedemann, Ralph}, title = {Morphological differentiation in African weakly electric fish (genus Campylomormyrus) relates to substrate preferences}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {3}, issn = {1866-8372}, doi = {10.25932/publishup-51871}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-518714}, pages = {13}, year = {2020}, abstract = {Under an ecological speciation scenario, the radiation of African weakly electric fish (genus Campylomormyrus) is caused by an adaptation to different food sources, associated with diversification of the electric organ discharge (EOD). This study experimentally investigates a phenotype-environment correlation to further support this scenario. Our behavioural experiments showed that three sympatric Campylomormyrus species with significantly divergent snout morphology differentially react to variation in substrate structure. While the short snout species (C. tamandua) exhibits preference to sandy substrate, the long snout species (C. rhynchophorus) significantly prefers a stone substrate for feeding. A third species with intermediate snout size (C. compressirostris) does not exhibit any substrate preference. This preference is matched with the observation that long-snouted specimens probe deeper into the stone substrate, presumably enabling them to reach prey more distant to the substrate surface. These findings suggest that the diverse feeding apparatus in the genus Campylomormyrus may have evolved in adaptation to specific microhabitats, i.e., substrate structures where these fish forage. Whether the parallel divergence in EOD is functionally related to this adaptation or solely serves as a prezygotic isolation mechanism remains to be elucidated.}, language = {en} } @techreport{AndresBruttelFriedrichsen2020, type = {Working Paper}, author = {Andres, Maximilian and Bruttel, Lisa Verena and Friedrichsen, Jana}, title = {Choosing between explicit cartel formation and tacit collusion - An experiment}, series = {CEPA Discussion Papers}, journal = {CEPA Discussion Papers}, number = {19}, issn = {2628-653X}, doi = {10.25932/publishup-47388}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-473885}, pages = {55}, year = {2020}, abstract = {Numerous studies investigate which sanctioning institutions prevent cartel formation but little is known as to how these sanctions work. We contribute to understanding the inner workings of cartels by studying experimentally the effect of sanctioning institutions on firms' communication. Using machine learning to organize the chat communication into topics, we find that firms are significantly less likely to communicate explicitly about price fixing when sanctioning institutions are present. At the same time, average prices are lower when communication is less explicit. A mediation analysis suggests that sanctions are effective in hindering cartel formation not only because they introduce a risk of being fined but also by reducing the prevalence of explicit price communication.}, language = {en} } @phdthesis{Aneley2020, author = {Aneley, Gedif Mulugeta}, title = {Drought tolerance prediction of potato by automatic phenotyping of morphological and physiological traits}, doi = {10.25932/publishup-48683}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-486836}, school = {Universit{\"a}t Potsdam}, pages = {xi, 176}, year = {2020}, abstract = {Potato is the 4th most important food crop in the world. Especially in tropical and sub-tropical potato production, drought is a yield limiting factor. Potato is sensitive to water stress. Potato yield loss under water stress could be reduced by using tolerant varieties and adjusted agronomic practices. Direct selection for yield under water-stressed conditions requires long selection cycles. Thus, identification of markers for marker-assisted selection may speed up breeding. The objective of this thesis is to identify morphological markers for drought tolerance by continuously monitoring plant growth and canopy temperature with an automatic phenotyping system. The phenotyping was performed in drought-stress experiments that were conducted in population A with 64 genotypes and population B with 21 genotypes in the screenhouse in 2015 and 2016 (population A) and in 2017 and 2018 (population B). Drought tolerance was quantified as deviation of the relative tuber starch yield from the experimental median (DRYM) and parent median (DRYMp). Relative tuber starch yield is starch yield under drought stress relative to the average starch yield of the respective cultivar under control conditions in the same experiment. The specific DRYM value was calculated based on the yield data of the same experiment or the global DRYM that was calculated from yield data derived from data combined over yeas of respective population or across multiple experiments including VALDIS and TROST experiments (2011-2016). Analysis of variance found a significant effect of genotype on DRYM indicating that the tolerance variation required for marker identification was given in both populations. Canopy growth was monitored continuously six times a day over five to ten weeks by a laser scanner system and yielded information on leaf area, plant height and leaf angle for population A and additionally on leaf inclination and light penetration depth for population B. Canopy temperature was measured 48 times a day over six to seven weeks by infrared thermometry in population B. From the continuous IRT surface temperature data set, the canopy temperature for each plant was selected by matching the time stamp of the IRT data with laser scanner data. Mean, maximum, range and growth rate values were calculated from continuous laser scanner measurements of respective canopy parameters. Among the canopy parameters, the maximum and mean values in long-term stress conditions showed better correlation with DRYM values calculated in the same experiment than growth rate and diurnal range values. Therefore, drought tolerance index prediction was done from maximum and mean values of canopy parameters. The tolerance index in specific experiment condition was linearly predicted by simple regression model from different single canopy parameters under long-term stress condition in population A (2016) and population B (2017 and 2018). Among the canopy parameters maximum light penetration depth (2017), mean leaf angle (2017, 2018, and 2016), mean leaf inclination or mean canopy temperature depression (2017 and 2018), maximum plant height (2017) were selected as tolerance predictors. However, no single parameters were sufficient to predict DRYM. Therefore, several independent parameters were integrated in a multiple regression model. In multiple regression model, specific experiment DRYM values in population A was predicted from mean leaf angle (2016). In population B, specific tolerance could be predicted from maximum light penetration depth and mean leaf inclination (2017) and mean leaf inclination (2018) or mean canopy temperature depression and mean leaf angle (2018). In data combined over season of population A, the multiple linear regression model selected maximum plant height and mean leaf angle as tolerance predictor. In Population B, mean leaf inclination was selected as tolerance predictor. However, in population A, the variation explained by the final model was too low. Furthermore, the average tolerances respective to parent median (2011-2018) across FGH plants or all plants (FGH and field) were predicted from maximum plant height (population A) and maximum plant height and mean leaf inclination (population B). Altogether, canopy parameters could be used as markers for drought tolerance. Therefore, water stress breeding in potato could be speed up through using leaf inclination, light penetration depth, plant height and canopy temperature depression as markers for drought tolerance, especially in long-term stress conditions.}, language = {en} } @phdthesis{Angelopoulos2020, author = {Angelopoulos, Michael}, title = {Mechanisms of sub-aquatic permafrost evolution in Arctic coastal environments}, school = {Universit{\"a}t Potsdam}, pages = {165}, year = {2020}, abstract = {Subsea permafrost is perennially cryotic earth material that lies offshore. Most submarine permafrost is relict terrestrial permafrost beneath the Arctic shelf seas, was inundated after the last glaciation, and has been warming and thawing ever since. It is a reservoir and confining layer for gas hydrates and has the potential to release greenhouse gases and affect global climate change. Furthermore, subsea permafrost thaw destabilizes coastal infrastructure. While numerous studies focus on its distribution and rate of thaw over glacial timescales, these studies have not been brought together and examined in their entirety to assess rates of thaw beneath the Arctic Ocean. In addition, there is still a large gap in our understanding of sub-aquatic permafrost processes on finer spatial and temporal scales. The degradation rate of subsea permafrost is influenced by the initial conditions upon submergence. Terrestrial permafrost that has already undergone warming, partial thawing or loss of ground ice may react differently to inundation by seawater compared to previously undisturbed ice-rich permafrost. Heat conduction models are sufficient to model the thaw of thick subsea permafrost from the bottom, but few studies have included salt diffusion for top-down chemical degradation in shallow waters characterized by mean annual cryotic conditions on the seabed. Simulating salt transport is critical for assessing degradation rates for recently inundated permafrost, which may accelerate in response to warming shelf waters, a lengthening open water season, and faster coastal erosion rates. In the nearshore zone, degradation rates are also controlled by seasonal processes like bedfast ice, brine injection, seasonal freezing under floating ice conditions and warm freshwater discharge from large rivers. The interplay of all these variables is complex and needs further research. To fill this knowledge gap, this thesis investigates sub-aquatic permafrost along the southern coast of the Bykovsky Peninsula in eastern Siberia. Sediment cores and ground temperature profiles were collected at a freshwater thermokarst lake and two thermokarst lagoons in 2017. At this site, the coastline is retreating, and seawater is inundating various types of permafrost: sections of ice-rich Pleistocene permafrost (Yedoma) cliffs at the coastline alternate with lagoons and lower elevation previously thawed and refrozen permafrost basins (Alases). Electrical resistivity surveys with floating electrodes were carried out to map ice-bearing permafrost and taliks (unfrozen zones in the permafrost, usually formed beneath lakes) along the diverse coastline and in the lagoons. Combined with the borehole data, the electrical resistivity results permit estimation of contemporary ice-bearing permafrost characteristics, distribution, and occasionally, thickness. To conceptualize possible geomorphological and marine evolutionary pathways to the formation of the observed layering, numerical models were applied. The developed model incorporates salt diffusion and seasonal dynamics at the seabed, including bedfast ice. Even along coastlines with mean annual non-cryotic boundary conditions like the Bykovsky Peninsula, the modelling results show that salt diffusion minimizes seasonal freezing of the seabed, leading to faster degradation rates compared to models without salt diffusion. Seasonal processes are also important for thermokarst lake to lagoon transitions because lagoons can generate cold hypersaline conditions underneath the ice cover. My research suggests that ice-bearing permafrost can form in a coastal lagoon environment, even under floating ice. Alas basins, however, may degrade more than twice as fast as Yedoma permafrost in the first several decades of inundation. In addition to a lower ice content compared to Yedoma permafrost, Alas basins may be pre-conditioned with salt from adjacent lagoons. Considering the widespread distribution of thermokarst in the Arctic, its integration into geophysical models and offshore surveys is important to quantify and understand subsea permafrost degradation and aggradation. Through numerical modelling, fieldwork, and a circum-Arctic review of subsea permafrost literature, this thesis provides new insights into sub-aquatic permafrost evolution in saline coastal environments.}, language = {en} } @article{AngelopoulosOverduinWestermannetal.2020, author = {Angelopoulos, Michael and Overduin, Pier Paul and Westermann, Sebastian and Tronicke, Jens and Strauss, Jens and Schirrmeister, Lutz and Biskaborn, Boris and Liebner, Susanne and Maksimov, Georgii and Grigoriev, Mikhail N. and Grosse, Guido}, title = {Thermokarst lake to lagoon transitions in Eastern Siberia}, series = {Journal of geophysical research : Earth surface}, volume = {125}, journal = {Journal of geophysical research : Earth surface}, number = {10}, publisher = {American Geophysical Union}, address = {Washington}, issn = {2169-9003}, doi = {10.1029/2019JF005424}, pages = {21}, year = {2020}, abstract = {As the Arctic coast erodes, it drains thermokarst lakes, transforming them into lagoons, and, eventually, integrates them into subsea permafrost. Lagoons represent the first stage of a thermokarst lake transition to a marine setting and possibly more saline and colder upper boundary conditions. In this research, borehole data, electrical resistivity surveying, and modeling of heat and salt diffusion were carried out at Polar Fox Lagoon on the Bykovsky Peninsula, Siberia. Polar Fox Lagoon is a seasonally isolated water body connected to Tiksi Bay through a channel, leading to hypersaline waters under the ice cover. The boreholes in the center of the lagoon revealed floating ice and a saline cryotic bed underlain by a saline cryotic talik, a thin ice-bearing permafrost layer, and unfrozen ground. The bathymetry showed that most of the lagoon had bedfast ice in spring. In bedfast ice areas, the electrical resistivity profiles suggested that an unfrozen saline layer was underlain by a thick layer of refrozen talik. The modeling showed that thermokarst lake taliks can refreeze when submerged in saltwater with mean annual bottom water temperatures below or slightly above 0 degrees C. This occurs, because the top-down chemical degradation of newly formed ice-bearing permafrost is slower than the refreezing of the talik. Hence, lagoons may precondition taliks with a layer of ice-bearing permafrost before encroachment by the sea, and this frozen layer may act as a cap on gas migration out of the underlying talik.}, language = {en} } @misc{AnnemarieWeissSchierletal.2020, author = {Annemarie, Amb{\"u}hl and Weiss, Irene M. and Schierl, Petra and Schmitzer, Ulrich and Kirichenko, Alexander and Heinemann, Matthias and Weiß, Adrian and Esposito, Paolo and Grewing, Farouk F. and Merli, Elena and Feichtinger, Barbara and Seng, Helmut and Wieber, Anja and Schollmeyer, Patrick and Kranzdorf, Anna and Werner, Eva and W{\"o}hrle, Georg and Brinker, Wolfram and Di Rocco, Emilia and Wesselmann, Katharina and L{\"o}bcke, Konrad and Benedetti, Ginevra}, title = {tessellae - Birthday Issue for Christine Walde}, series = {thersites}, volume = {2020}, journal = {thersites}, number = {11}, editor = {Amb{\"u}hl, Annemarie}, issn = {2364-7612}, doi = {10.34679/thersites.vol11}, year = {2020}, abstract = {This special birthday issue for Christine Walde, co-founder and co-editor of thersites, features contributions from colleagues and friends. The articles, essays, and book reviews, centering around the honoranda's research interests as well as focusing on core topics of thersites, form a thematically varied mosaic (tessellae): innovative constructions of literary genres and poetics (especially bucolic, elegy, epic, and epigram), images of the city of Rome and its counterparts, sleep and dreams, history of classical scholarship, gender studies, and classical reception studies.}, language = {en} } @article{ApanasewiczGrothScheffleretal.2020, author = {Apanasewicz, Anna and Groth, Detlef and Scheffler, Christiane and Hermanussen, Michael and Piosek, Magdalena and Wychowaniec, Patrycja and Babiszewska, Magdalena and Barbarska, Olga and Ziomkiewicz, Anna}, title = {Traumatized women's infants are bigger than children of mothers without traumas}, series = {Journal of biological and clinical anthropology : Anthropologischer Anzeiger}, volume = {77}, journal = {Journal of biological and clinical anthropology : Anthropologischer Anzeiger}, number = {5}, publisher = {Schweizerbart science publishers}, address = {Stuttgart}, issn = {0003-5548}, doi = {10.1127/anthranz/2020/1285}, pages = {359 -- 374}, year = {2020}, abstract = {Life history theory predicts that experiencing stress during the early period of life will result in accelerated growth and earlier maturation. Indeed, animal and some human studies documented a faster pace of growth in the offspring of stressed mothers. Recent advances in epigenetics suggest that the effects of early developmental stress might be passed across the generations. However, evidence for such intergenerational transmission is scarce, at least in humans. Here we report the results of the study investigating the association between childhood trauma in mothers and physical growth in their children during the first months of life. Anthropometric and psychological data were collected from 99 mothers and their exclusively breastfed children at the age of 5 months. The mothers completed the Early Life Stress Questionnaire to assess childhood trauma. The questionnaire includes questions about the most traumatic events that they had experienced before the age of 12 years. Infant growth was evaluated based on the anthropometric measurements of weight, length, and head circumference. Also, to control for the size of maternal investment, the composition of breast milk samples taken at the time of infant anthropometric measurements was investigated. The children of mothers with higher early life stress tended to have higher weight and bigger head circumference. The association between infant anthropometrics and early maternal stress was not affected by breast milk composition, suggesting that the effect of maternal stress on infant growth was independent of the size of maternal investment. Our results demonstrate that early maternal trauma may affect the pace of growth in the offspring and, in consequence, lead to a faster life history strategy. This effect might be explained via changes in offspring epigenetics.}, language = {en} } @article{ApriyantoTambunan2020, author = {Apriyanto, Ardha and Tambunan, Van Basten}, title = {The complete mitochondrial genome of oil palm pollinating weevil, Elaeidobius kamerunicus Faust}, series = {Mitochondrial DNA: Part B}, volume = {5}, journal = {Mitochondrial DNA: Part B}, number = {3}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {2380-2359}, doi = {10.1080/23802359.2020.1823899}, pages = {3450 -- 3452}, year = {2020}, abstract = {Elaeidobius kamerunicusis the most important insect pollinator in oil palm plantations. In this study, the mitochondrial genome (mitogenome) ofE. kamerunicus(17.729 bp), a member of the Curculionidae family, will be reported. The mitogenome consisted of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and a putative control region (CR). Phylogenetic analysis based on 13 protein-coding genes (PCGs) using maximum Likelihood (ML) methods indicated thatE. kamerunicusbelongs to the Curculionidae family. This mitochondrial genome provides essential information for understanding genetic populations, phylogenetics, molecular evolution, and other biological applications in this species.}, language = {en} } @article{AraziAsadiKhalkhalietal.2020, author = {Arazi, Hamid and Asadi, Abbas and Khalkhali, Farhood and Boullosa, Daniel and Hackney, Anthony C. and Granacher, Urs and Zouhal, Hassane}, title = {Association Between the Acute to Chronic Workload Ratio and Injury Occurrence in Young Male Team Soccer Players}, volume = {11}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-042X}, doi = {10.3389/fphys.2020.00608}, pages = {7}, year = {2020}, abstract = {This study aimed to investigate the relationship between the acute to chronic workload ratio (ACWR), based upon participant session rating of perceived exertion (sRPE), using two models [(1) rolling averages (ACWRRA); and (2) exponentially weighted moving averages (ACWREWMA)] and the injury rate in young male team soccer players aged 17.1 ± 0.7 years during a competitive mesocycle. Twenty-two players were enrolled in this study and performed four training sessions per week with 2 days of recovery and 1 match day per week. During each training session and each weekly match, training time and sRPE were recorded. In addition, training impulse (TRIMP), monotony, and strain were subsequently calculated. The rate of injury was recorded for each soccer player over a period of 4 weeks (i.e., 28 days) using a daily questionnaire. The results showed that over the course of the study, the number of non-contact injuries was significantly higher than that for contact injuries (2.5 vs. 0.5, p = 0.01). There were also significant positive correlations between sRPE and training time (r = 0.411, p = 0.039), ACWRRA (r = 0.47, p = 0.049), and ACWREWMA (r = 0.51, p = 0.038). In addition, small-to-medium correlations were detected between ACWR and non-contact injury occurrence (ACWRRA, r = 0.31, p = 0.05; ACWREWMA, r = 0.53, p = 0.03). Explained variance (r²) for non-contact injury was significantly greater using the ACWREWMA model (ranging between 21 and 52\%) compared with ACWRRA (ranging between 17 and 39\%). In conclusion, the results of this study showed that the ACWREWMA model is more sensitive than ACWRRA to identify non-contact injury occurrence in male team soccer players during a short period in the competitive season.}, language = {en} } @article{AraziAsadiKhalkhalietal.2020, author = {Arazi, Hamid and Asadi, Abbas and Khalkhali, Farhood and Boullosa, Daniel and Hackney, Anthony C. and Granacher, Urs and Zouhal, Hassane}, title = {Association Between the Acute to Chronic Workload Ratio and Injury Occurrence in Young Male Team Soccer Players}, series = {Frontiers in Physiology}, volume = {11}, journal = {Frontiers in Physiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-042X}, doi = {10.3389/fphys.2020.00995}, pages = {7}, year = {2020}, abstract = {This study aimed to investigate the relationship between the acute to chronic workload ratio (ACWR), based upon participant session rating of perceived exertion (sRPE), using two models [(1) rolling averages (ACWRRA); and (2) exponentially weighted moving averages (ACWREWMA)] and the injury rate in young male team soccer players aged 17.1 ± 0.7 years during a competitive mesocycle. Twenty-two players were enrolled in this study and performed four training sessions per week with 2 days of recovery and 1 match day per week. During each training session and each weekly match, training time and sRPE were recorded. In addition, training impulse (TRIMP), monotony, and strain were subsequently calculated. The rate of injury was recorded for each soccer player over a period of 4 weeks (i.e., 28 days) using a daily questionnaire. The results showed that over the course of the study, the number of non-contact injuries was significantly higher than that for contact injuries (2.5 vs. 0.5, p = 0.01). There were also significant positive correlations between sRPE and training time (r = 0.411, p = 0.039), ACWRRA (r = 0.47, p = 0.049), and ACWREWMA (r = 0.51, p = 0.038). In addition, small-to-medium correlations were detected between ACWR and non-contact injury occurrence (ACWRRA, r = 0.31, p = 0.05; ACWREWMA, r = 0.53, p = 0.03). Explained variance (r 2) for non-contact injury was significantly greater using the ACWREWMA model (ranging between 21 and 52\%) compared with ACWRRA (ranging between 17 and 39\%). In conclusion, the results of this study showed that the ACWREWMA model is more sensitive than ACWRRA to identify non-contact injury occurrence in male team soccer players during a short period in the competitive season.}, language = {en} } @misc{AraziAsadiKhalkhalietal.2020, author = {Arazi, Hamid and Asadi, Abbas and Khalkhali, Farhood and Boullosa, Daniel and Hackney, Anthony C. and Granacher, Urs and Zouhal, Hassane}, title = {Association Between the Acute to Chronic Workload Ratio and Injury Occurrence in Young Male Team Soccer Players}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {666}, issn = {1866-8364}, doi = {10.25932/publishup-48233}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-482330}, pages = {9}, year = {2020}, abstract = {This study aimed to investigate the relationship between the acute to chronic workload ratio (ACWR), based upon participant session rating of perceived exertion (sRPE), using two models [(1) rolling averages (ACWRRA); and (2) exponentially weighted moving averages (ACWREWMA)] and the injury rate in young male team soccer players aged 17.1 ± 0.7 years during a competitive mesocycle. Twenty-two players were enrolled in this study and performed four training sessions per week with 2 days of recovery and 1 match day per week. During each training session and each weekly match, training time and sRPE were recorded. In addition, training impulse (TRIMP), monotony, and strain were subsequently calculated. The rate of injury was recorded for each soccer player over a period of 4 weeks (i.e., 28 days) using a daily questionnaire. The results showed that over the course of the study, the number of non-contact injuries was significantly higher than that for contact injuries (2.5 vs. 0.5, p = 0.01). There were also significant positive correlations between sRPE and training time (r = 0.411, p = 0.039), ACWRRA (r = 0.47, p = 0.049), and ACWREWMA (r = 0.51, p = 0.038). In addition, small-to-medium correlations were detected between ACWR and non-contact injury occurrence (ACWRRA, r = 0.31, p = 0.05; ACWREWMA, r = 0.53, p = 0.03). Explained variance (r 2) for non-contact injury was significantly greater using the ACWREWMA model (ranging between 21 and 52\%) compared with ACWRRA (ranging between 17 and 39\%). In conclusion, the results of this study showed that the ACWREWMA model is more sensitive than ACWRRA to identify non-contact injury occurrence in male team soccer players during a short period in the competitive season.}, language = {en} } @misc{AraziAsadiKhalkhalietal.2020, author = {Arazi, Hamid and Asadi, Abbas and Khalkhali, Farhood and Boullosa, Daniel and Hackney, Anthony C. and Granacher, Urs and Zouhal, Hassane}, title = {Association Between the Acute to Chronic Workload Ratio and Injury Occurrence in Young Male Team Soccer Players}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {644}, issn = {1866-8364}, doi = {10.25932/publishup-47296}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472961}, pages = {9}, year = {2020}, abstract = {This study aimed to investigate the relationship between the acute to chronic workload ratio (ACWR), based upon participant session rating of perceived exertion (sRPE), using two models [(1) rolling averages (ACWRRA); and (2) exponentially weighted moving averages (ACWREWMA)] and the injury rate in young male team soccer players aged 17.1 ± 0.7 years during a competitive mesocycle. Twenty-two players were enrolled in this study and performed four training sessions per week with 2 days of recovery and 1 match day per week. During each training session and each weekly match, training time and sRPE were recorded. In addition, training impulse (TRIMP), monotony, and strain were subsequently calculated. The rate of injury was recorded for each soccer player over a period of 4 weeks (i.e., 28 days) using a daily questionnaire. The results showed that over the course of the study, the number of non-contact injuries was significantly higher than that for contact injuries (2.5 vs. 0.5, p = 0.01). There were also significant positive correlations between sRPE and training time (r = 0.411, p = 0.039), ACWRRA (r = 0.47, p = 0.049), and ACWREWMA (r = 0.51, p = 0.038). In addition, small-to-medium correlations were detected between ACWR and non-contact injury occurrence (ACWRRA, r = 0.31, p = 0.05; ACWREWMA, r = 0.53, p = 0.03). Explained variance (r²) for non-contact injury was significantly greater using the ACWREWMA model (ranging between 21 and 52\%) compared with ACWRRA (ranging between 17 and 39\%). In conclusion, the results of this study showed that the ACWREWMA model is more sensitive than ACWRRA to identify non-contact injury occurrence in male team soccer players during a short period in the competitive season.}, language = {en} } @phdthesis{Arentsen2020, author = {Arentsen, Anke}, title = {Galactic archaeology with the oldest stars in the Milky Way}, doi = {10.25932/publishup-47602}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-476022}, school = {Universit{\"a}t Potsdam}, year = {2020}, abstract = {In einer dunklen Nacht kann man tausende Sterne sehen. All diese Sterne befinden sich innerhalb der Milchstraße, unsere Heimatgalaxie. Nicht alle Sterne sind gleich, sie k{\"o}nnen zum Beispiel unterschiedliche Gr{\"o}ßen, Massen, Temperaturen und Alter haben. Die schwereren Sterne leben (aus astronomischer Sicht) nicht lange, nur wenige Millionen Jahren, aber Sterne kleiner als die Sonne k{\"o}nnen mehr als zehn Milliarden Jahren alt werden. Kleine Sterne die ganz am Anfang des Universums entstanden sind leuchten immer noch. Diese uralten Sterne sind sehr hilfreich um mehr {\"u}ber das fr{\"u}he Universum, die erste Sterne und die Geschichte der Milchstraße zu erfahren. Aber wie erkennt man uralte Sterne? Anhand ihrer chemischen Fingerabdr{\"u}cke! Am Anfang des Universums gab es nur zwei chemische Elemente: Wasserstoff und Helium (und ein klein bisschen Lithium). Alle schwereren Elementen wie zum Beispiel Kohlenstoff, Kalzium und Eisen sind erst sp{\"a}ter innerhalb von Sternen und in Sternexplosionen entstanden. Je mehr Sternen geboren werden, sich entwickeln und explodieren, desto mehr chemische Elemente gibt es im Universum. Sterne die sp{\"a}ter entstehen werden mit einer gr{\"o}ßeren Menge an schweren Elementen, beziehungsweise einer gr{\"o}ßeren Metallizit{\"a}t, geboren. Im Bereich der Astronomie der sich „Galaktische Arch{\"a}ologie" nennt benutzt man Sterne mit unterschiedlichen Metallizit{\"a}ten um die Geschichte der Milchstraße zu erforschen. In dieser Doktorarbeit liegt der Fokus auf den metallarmen Sterne, da man erwartet dass diese Sterne am {\"a}ltesten sind und uns deswegen viel {\"u}ber die fr{\"u}he Geschichte erz{\"a}hlen k{\"o}nnen. Bis heute haben wir noch keinen metallfreien Stern entdeckt, aber die metall{\"a}rmsten Sterne geben uns wichtige Einblicke in das Leben und Sterben der ersten Sterne. Viele von diesen {\"a}ltesten, metall{\"a}rmsten Sternen haben unerwartet viel Kohlenstoff im Vergleich zu zum Beispiel Eisen. Diese kohlenstoffreichen, metallarmen Sterne (CEMP Sterne) erz{\"a}hlen uns etwas {\"u}ber die allerersten Sterne im Universum: sie haben relativ viel Kohlenstoff produziert. Wenn wir uns die genauen chemischen Fingerabdr{\"u}cke von CEMP Sterne angucken, erz{\"a}hlen sie uns noch viel mehr. Aber unsere Interpretation h{\"a}ngt von der Annahme ab, dass der chemische Fingerabdruck sich w{\"a}hrend des Lebens eines Sternes nicht ge{\"a}ndert hat. In dieser Dissertation werden neue Daten pr{\"a}sentiert die zeigen dass diese Annahme vielleicht zu einfach ist: viele extrem metallarme CEMP Sterne befinden sich in Doppelsternsystemen. Interaktion zwischen zwei Sternen in einem Doppelsternsystem k{\"o}nnte die Oberfl{\"a}che von CEMP Sternen verschmutzt haben. Zwar wurden die meisten CEMP Sterne h{\"o}chstwahrscheinlich nicht verschmutzt, aber wir sollten vorsichtig sein mit unserer Interpretation. Die CEMP Sterne und andere metallarme Sterne sind auch wichtig f{\"u}r unser Verst{\"a}ndnis der fr{\"u}hen Geschichte der Milchstraße. Die meisten Forscher, die metallarme Sterne studieren, suchen diese Sterne im Halo der Milchstraße: einer riesigen, diffuse Komponente die ungef{\"a}hr 1\% der Sterne in unserer Galaxie enth{\"a}lt. Modelle sagen aber vorher dass die {\"a}ltesten metallarmen Sterne sich im Zentrum der Milchstraße befinden (im „Bulge"). Das Zentrum ist leider, wegen großer Mengen Staub zwischen uns und dem Zentrum und einer {\"u}berw{\"a}ltigenden Mehrheit an metallreichen Sternen, schwierig zu beobachten. Diese Dissertation pr{\"a}sentiert Ergebnisse des „Pristine Inner Galaxy Survey" (PIGS), einer neuen Himmelsdurchmusterung, die die {\"a}ltesten Sterne im Bulge der Milchstraße sucht (und findet). PIGS benutzt Bilder mit einer Farbe, die f{\"u}r die Metallizit{\"a}t der Sterne empfindlich ist, und kann deswegen sehr effektiv die metallarmen Sterne aus Millionen anderer Sterne ausw{\"a}hlen. Von interessanten Kandidaten wurden Spektren aufgenommen und mit zwei unabh{\"a}ngigen Methoden analysiert. Mit dieser Strategie hat PIGS die bislang gr{\"o}ßte Anzahl an metallarmen Sternen in der inneren Galaxie entdeckt. Ein neues Ergebnis aus den PIGS Daten ist, dass die metall{\"a}rmeren Sterne langsamer um das Galaktische Zentrum drehen als die metallreichen Sterne, und dass sie mehr willk{\"u}rliche Bewegung zeigen. Eine zweite wichtige Leistung von PIGS ist die Entdeckung von dutzenden CEMP Sternen in der innere Galaxie, wo vorher nur zwei bekannt waren. Die neuen Ergebnisse aus dieser Dissertation helfen uns die ersten Sterne und die Geschichte der Milchstraße besser zu verstehen. Laufende und neue Himmelsdurchmusterungen in den n{\"a}chsten Jahren werden uns noch viel mehr Informationen geben: es ist eine aufregende Zeit f{\"u}r die Galaktische Arch{\"a}ologie.}, language = {en} } @article{Arnold2020, author = {Arnold, Patrick}, title = {Evolution of the mammalian neck from developmental, morpho-functional, and paleontological perspectives}, series = {Journal of Mammalian Evolution}, volume = {28}, journal = {Journal of Mammalian Evolution}, number = {2}, publisher = {Springer}, address = {New York}, issn = {1064-7554}, doi = {10.1007/s10914-020-09506-9}, pages = {173 -- 183}, year = {2020}, abstract = {The mammalian neck adopts a variety of postures during daily life and generates numerous head trajectories. Despite its functional diversity, the neck is constrained to seven cervical vertebrae in (almost) all mammals. Given this low number, an unexpectedly high degree of modularity of the mammalian neck has more recently been uncovered. This work aims to review neck modularity in mammals from a developmental, morpho-functional, and paleontological perspective and how high functional diversity evolved in the mammalian neck after the occurrence of meristic limitations. The fixed number of cervical vertebrae and the developmental modularity of the mammalian neck are closely linked to anterior Hox genes expression and strong developmental integration between the neck and other body regions. In addition, basic neck biomechanics promote morpho-functional modularity due to preferred motion axes in the cranio-cervical and cervico-thoracic junction. These developmental and biomechanical determinants result in the characteristic and highly conserved shape variation among the vertebrae that delimits morphological modules. The step-wise acquisition of these unique cervical traits can be traced in the fossil record. The increasing functional specialization of neck modules, however, did not evolve all at once but started much earlier in the upper than in the lower neck. Overall, the strongly conserved modularity in the mammalian neck represents an evolutionary trade-off between the meristic constraints and functional diversity. Although a morpho-functional partition of the neck is common among amniotes, the degree of modularity and the way neck disparity is realized is unique in mammals.}, language = {en} } @misc{ArnousZeckraVenerdinietal.2020, author = {Arnous, Ahmad and Zeckra, Martin and Venerdini, Agostina and Alvarado, Patricia and Arrowsmith, Ram{\´o}n and Guillemoteau, Julien and Landgraf, Angela and Guti{\´e}rrez, Adolfo Antonio and Strecker, Manfred}, title = {Neotectonic Activity in the Low-Strain Broken Foreland (Santa B{\´a}rbara System) of the North-Western Argentinean Andes (26°S)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {1008}, issn = {1866-8372}, doi = {10.25932/publishup-48018}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-480183}, pages = {1 -- 25}, year = {2020}, abstract = {Uplift in the broken Andean foreland of the Argentine Santa B{\´a}rbara System (SBS) is associated with the contractional reactivation of basement anisotropies, similar to those reported from the thick-skinned Cretaceous-Eocene Laramide province of North America. Fault scarps, deformed Quaternary deposits and landforms, disrupted drainage patterns, and medium-sized earthquakes within the SBS suggest that movement along these structures may be a recurring phenomenon, with yet to be defined repeat intervals and rupture lengths. In contrast to the Subandes thrust belt farther north, where eastward-migrating deformation has generated a well-defined thrust front, the SBS records spatiotemporally disparate deformation along structures that are only known to the first order. We present herein the results of geomorphic desktop analyses, structural field observations, and 2D electrical resistivity tomography and seismic-refraction tomography surveys and an interpretation of seismic reflection profiles across suspected fault scarps in the sedimentary basins adjacent to the Candelaria Range (CR) basement uplift, in the south-central part of the SBS. Our analysis in the CR piedmont areas reveals consistency between the results of near-surface electrical resistivity and seismic-refraction tomography surveys, the locations of prominent fault scarps, and structural geometries at greater depth imaged by seismic reflection data. We suggest that this deformation is driven by deep-seated blind thrusting beneath the CR and associated regional warping, while shortening involving Mesozoic and Cenozoic sedimentary strata in the adjacent basins was accommodated by layer-parallel folding and flexural-slip faults that cut through Quaternary landforms and deposits at the surface.}, language = {en} } @article{ArnousZeckraVenerdinietal.2020, author = {Arnous, Ahmad and Zeckra, Martin and Venerdini, Agostina and Alvarado, Patricia and Arrowsmith, Ram{\´o}n and Guillemoteau, Julien and Landgraf, Angela and Guti{\´e}rrez, Adolfo Antonio and Strecker, Manfred}, title = {Neotectonic Activity in the Low-Strain Broken Foreland (Santa B{\´a}rbara System) of the North-Western Argentinean Andes (26°S)}, series = {Lithosphere}, volume = {2020}, journal = {Lithosphere}, number = {1}, publisher = {GSA}, address = {Boulder, Colo.}, issn = {1947-4253}, doi = {10.2113/2020/8888588}, pages = {1 -- 25}, year = {2020}, abstract = {Uplift in the broken Andean foreland of the Argentine Santa B{\´a}rbara System (SBS) is associated with the contractional reactivation of basement anisotropies, similar to those reported from the thick-skinned Cretaceous-Eocene Laramide province of North America. Fault scarps, deformed Quaternary deposits and landforms, disrupted drainage patterns, and medium-sized earthquakes within the SBS suggest that movement along these structures may be a recurring phenomenon, with yet to be defined repeat intervals and rupture lengths. In contrast to the Subandes thrust belt farther north, where eastward-migrating deformation has generated a well-defined thrust front, the SBS records spatiotemporally disparate deformation along structures that are only known to the first order. We present herein the results of geomorphic desktop analyses, structural field observations, and 2D electrical resistivity tomography and seismic-refraction tomography surveys and an interpretation of seismic reflection profiles across suspected fault scarps in the sedimentary basins adjacent to the Candelaria Range (CR) basement uplift, in the south-central part of the SBS. Our analysis in the CR piedmont areas reveals consistency between the results of near-surface electrical resistivity and seismic-refraction tomography surveys, the locations of prominent fault scarps, and structural geometries at greater depth imaged by seismic reflection data. We suggest that this deformation is driven by deep-seated blind thrusting beneath the CR and associated regional warping, while shortening involving Mesozoic and Cenozoic sedimentary strata in the adjacent basins was accommodated by layer-parallel folding and flexural-slip faults that cut through Quaternary landforms and deposits at the surface.}, language = {en} } @phdthesis{Arya2020, author = {Arya, Pooja}, title = {Light controlled active and passive motion of colloidal particles}, doi = {10.25932/publishup-48388}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-483880}, school = {Universit{\"a}t Potsdam}, pages = {xvii, 183}, year = {2020}, abstract = {In this dissertation we introduce a concept of light driven active and passive manipulation of colloids trapped at solid/liquid interface. The motion is induced due to generation of light driven diffusioosmotic flow (LDDO) upon irradiation with light of appropriate wavelength. The origin of the flow is due to osmotic pressure gradient resulting from a concentration gradient at the solid/liquid interface of the photosensitive surfactant present in colloidal dispersion. The photosensitive surfactant consists of a cationic head group and a hydrophobic tail in which azobenzene group is integrated in. The azobenzene is known to undergo reversible photo-isomerization from a stable trans to a meta stable cis state under irradiation with UV light. Exposure to light of larger wavelength results in back photo-isomerization from cis to trans state. The two isomers have different molecular properties, for instance, trans isomer has a rod like structure and low polarity (0 dipole moment), whereas cis one is bent and has a dipole moment of ~3 Debye. Being integrated in the hydrophobic tail of the surfactant molecule, the azobenzene state determines the hydrophobicity of the whole molecule: in the trans state the surfactant is more hydrophobic than in the cis-state. In this way many properties of the surfactant such as the CMC, solubility and the interaction potential with a solid surface can be altered by light. When the solution containing such a surfactant is irradiated with focused light, a concentration gradient of different isomers is formed near the boundary of the irradiated area near the solid surface resulting in osmotic pressure gradient. The generated diffusioosmotic (DO) flow carries the particles passively along. The local-LDDO flow can be generated around and by each particle when mesoporous silica colloids are dispersed in the surfactant solution. This is because porous particles act as a sink/source which absorbs azobenzene molecule in trans state and expels it when it is in the cis state. The DO flows generated at each particle interact resulting in aggregation or separation depending upon the initial state of surfactant molecules. The kinetic of aggregation and separation can be controlled and manipulated by altering the parameters such as the wavelength and intensity of the applied light, as well as surfactant and particle concentration. Using two wavelengths simultaneously allows for dynamic gathering and separation creating fascinating patterns such as 2D disk of well separated particles or establishing collective complex behaviour of particle ensemble as described in this thesis. The mechanism of l-LDDO is also used to generate self-propelled motion. This is possible when half of the porous particle is covered by metal layer, basically blocking the pores on one side. The LDDO flow generated on uncapped side pushes the particle forward resulting in a super diffusive motion. The system of porous particle and azobenzene containing surfactant molecule can be utilized for various application such as drug delivery, cargo transportation, self-assembling, micro motors/ machines or micro patterning.}, language = {en} } @article{AryaFeldmannKopyshevetal.2020, author = {Arya, Pooja and Feldmann, David and Kopyshev, Alexey and Lomadze, Nino and Santer, Svetlana}, title = {Light driven guided and self-organized motion of mesoporous colloidal particles}, series = {Soft matter}, volume = {16}, journal = {Soft matter}, number = {5}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1744-683X}, doi = {10.1039/c9sm02068c}, pages = {1148 -- 1155}, year = {2020}, abstract = {We report on guided and self-organized motion of ensembles of mesoporous colloidal particles that can undergo dynamic aggregation or separation upon exposure to light. The forces on particles involve the phenomenon of light-driven diffusioosmosis (LDDO) and are hydrodynamic in nature. They can be made to act passively on the ensemble as a whole but also used to establish a mutual interaction between particles. The latter scenario requires a porous colloid morphology such that the particle can act as a source or sink of a photosensitive surfactant, which drives the LDDO process. The interplay between the two modes of operation leads to fascinating possibilities of dynamical organization and manipulation of colloidal ensembles adsorbed at solid-liquid interfaces. While the passive mode can be thought of to allow for a coarse structuring of a cloud of colloids, the inter-particle mode may be used to impose a fine structure on a 2D particle grid. Local flow is used to impose and tailor interparticle interactions allowing for much larger interaction distances that can be achieved with, e.g., DLVO type of forces, and is much more versatile.}, language = {en} } @article{AryaJelkenFeldmannetal.2020, author = {Arya, Pooja and Jelken, Joachim and Feldmann, David and Lomadze, Nino and Santer, Svetlana}, title = {Light driven diffusioosmotic repulsion and attraction of colloidal particles}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {152}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {19}, publisher = {American Institute of Physics}, address = {Melville, NY}, issn = {0021-9606}, doi = {10.1063/5.0007556}, pages = {10}, year = {2020}, abstract = {In this paper, we introduce the phenomenon of light driven diffusioosmotic long-range attraction and repulsion of porous particles under irradiation with UV light. The change in the inter-particle interaction potential is governed by flow patterns generated around single colloids and results in reversible aggregation or separation of the mesoporous silica particles that are trapped at a solid surface. The range of the interaction potential extends to several times the diameter of the particle and can be adjusted by varying the light intensity. The "fuel" of the process is a photosensitive surfactant undergoing photo-isomerization from a more hydrophobic trans-state to a rather hydrophilic cis-state. The surfactant has different adsorption affinities to the particles depending on the isomerization state. The trans-isomer, for example, tends to accumulate in the negatively charged pores of the particles, while the cis-isomer prefers to remain in the solution. This implies that when under UV irradiation cis-isomers are being formed within the pores, they tend to diffuse out readily and generate an excess concentration near the colloid's outer surface, ultimately resulting in the initiation of diffusioosmotic flow. The direction of the flow depends strongly on the dynamic redistribution of the fraction of trans- and cis-isomers near the colloids due to different kinetics of photo-isomerization within the pores as compared to the bulk. The unique feature of the mechanism discussed in the paper is that the long-range mutual repulsion but also the attraction can be tuned by convenient external optical stimuli such as intensity so that a broad variety of experimental situations for manipulation of a particle ensemble can be realized.}, language = {en} } @article{AryaJelkenLomadzeetal.2020, author = {Arya, Pooja and Jelken, Joachim and Lomadze, Nino and Santer, Svetlana and Bekir, Marek}, title = {Kinetics of photo-isomerization of azobenzene containing surfactants}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistry}, volume = {152}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistry}, number = {2}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.5135913}, pages = {10}, year = {2020}, abstract = {We report on photoisomerization kinetics of azobenzene containing surfactants in aqueous solution. The surfactant molecule consists of a positively charged trimethylammonium bromide head group, a hydrophobic spacer connecting via 6 to 10 CH2 groups to the azobenzene unit, and the hydrophobic tail of 1 and 3CH(2) groups. Under exposure to light, the azobenzene photoisomerizes from more stable trans- to metastable cis-state, which can be switched back either thermally in dark or by illumination with light of a longer wavelength. The surfactant isomerization is described by a kinetic model of a pseudo first order reaction approaching equilibrium, where the intensity controls the rate of isomerization until the equilibrated state. The rate constants of the trans-cis and cis-trans photoisomerization are calculated as a function of several parameters such as wavelength and intensity of light, the surfactant concentration, and the length of the hydrophobic tail. The thermal relaxation rate from cis- to trans-state is studied as well. The surfactant isomerization shows a different kinetic below and above the critical micellar concentration of the trans isomer due to steric hindrance within the densely packed micelle but does not depend on the spacer length.}, language = {en} } @phdthesis{Aseev2020, author = {Aseev, Nikita}, title = {Modeling and understanding dynamics of charged particles in the Earth's inner magnetosphere}, doi = {10.25932/publishup-47921}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-479211}, school = {Universit{\"a}t Potsdam}, pages = {xxii, 154}, year = {2020}, abstract = {The Earth's inner magnetosphere is a very dynamic system, mostly driven by the external solar wind forcing exerted upon the magnetic field of our planet. Disturbances in the solar wind, such as coronal mass ejections and co-rotating interaction regions, cause geomagnetic storms, which lead to prominent changes in charged particle populations of the inner magnetosphere - the plasmasphere, ring current, and radiation belts. Satellites operating in the regions of elevated energetic and relativistic electron fluxes can be damaged by deep dielectric or surface charging during severe space weather events. Predicting the dynamics of the charged particles and mitigating their effects on the infrastructure is of particular importance, due to our increasing reliance on space technologies. The dynamics of particles in the plasmasphere, ring current, and radiation belts are strongly coupled by means of collisions and collisionless interactions with electromagnetic fields induced by the motion of charged particles. Multidimensional numerical models simplify the treatment of transport, acceleration, and loss processes of these particles, and allow us to predict how the near-Earth space environment responds to solar storms. The models inevitably rely on a number of simplifications and assumptions that affect model accuracy and complicate the interpretation of the results. In this dissertation, we quantify the processes that control electron dynamics in the inner magnetosphere, paying particular attention to the uncertainties of the employed numerical codes and tools. We use a set of convenient analytical solutions for advection and diffusion equations to test the accuracy and stability of the four-dimensional Versatile Electron Radiation Belt (VERB-4D) code. We show that numerical schemes implemented in the code converge to the analytical solutions and that the VERB-4D code demonstrates stable behavior independent of the assumed time step. The order of the numerical scheme for the convection equation is demonstrated to affect results of ring current and radiation belt simulations, and it is crucially important to use high-order numerical schemes to decrease numerical errors in the model. Using the thoroughly tested VERB-4D code, we model the dynamics of the ring current electrons during the 17 March 2013 storm. The discrepancies between the model and observations above 4.5 Earth's radii can be explained by uncertainties in the outer boundary conditions. Simulation results indicate that the electrons were transported from the geostationary orbit towards the Earth by the global-scale electric and magnetic fields. We investigate how simulation results depend on the input models and parameters. The model is shown to be particularly sensitive to the global electric field and electron lifetimes below 4.5 Earth's radii. The effects of radial diffusion and subauroral polarization streams are also quantified. We developed a data-assimilative code that blends together a convection model of energetic electron transport and loss and Van Allen Probes satellite data by means of the Kalman filter. We show that the Kalman filter can correct model uncertainties in the convection electric field, electron lifetimes, and boundary conditions. It is also demonstrated how the innovation vector - the difference between observations and model prediction - can be used to identify physical processes missing in the model of energetic electron dynamics. We computed radial profiles of phase space density of ultrarelativistic electrons, using Van Allen Probes measurements. We analyze the shape of the profiles during geomagnetically quiet and disturbed times and show that the formation of new local minimums in the radial profiles coincides with the ground observations of electromagnetic ion-cyclotron (EMIC) waves. This correlation indicates that EMIC waves are responsible for the loss of ultrarelativistic electrons from the heart of the outer radiation belt into the Earth's atmosphere.}, language = {en} } @phdthesis{Ashouri2020, author = {Ashouri, Mohammadreza}, title = {TrainTrap}, school = {Universit{\"a}t Potsdam}, pages = {XIX, 103}, year = {2020}, language = {en} } @article{AssagraAltafimdoCarmoetal.2020, author = {Assagra, Yuri A.O. and Altafim, Ruy Alberto Pisani and do Carmo, Joao P. and Altafim, Ruy A.C. and Rychkov, Dmitry and Wirges, Werner and Gerhard, Reimund}, title = {A new route to piezo-polymer transducers: 3D printing of polypropylene ferroelectrets}, series = {IEEE transactions on dielectrics and electrical insulation}, volume = {27}, journal = {IEEE transactions on dielectrics and electrical insulation}, number = {5}, publisher = {Inst. of Electr. and Electronics Engineers}, address = {Piscataway}, issn = {1070-9878}, doi = {10.1109/TDEI.2020.008461}, pages = {1668 -- 1674}, year = {2020}, abstract = {Here, a promising approach for producing piezo-polymer transducers in a one-step process is presented. Using 3D-printing technology and polypropylene (PP) filaments, we are able to print a two-layered film structure with regular cavities of precisely controlled size and shape. It is found that the 3D-printed samples exhibit piezoelectric coefficients up to 200 pC/N, similar to those of other PP ferroelectrets, and their temporal and thermal behavior is in good agreement with those known of PP ferroelectrets. The piezoelectric response strongly decreases for applied pressures above 20 kPa, as the pressure in the air-filled cavities strongly influences the overall elastic modulus of ferroelectrets.}, language = {en} } @article{AtharePradhanKropp2020, author = {Athare, Tushar Ramchandra and Pradhan, Prajal and Kropp, J{\"u}rgen}, title = {Environmental implications and socioeconomic characterisation of Indian diets}, series = {The science of the total environment}, volume = {737}, journal = {The science of the total environment}, publisher = {Elsevier Science}, address = {Amsterdam [u.a.]}, issn = {0048-9697}, doi = {10.1016/j.scitotenv.2020.139881}, pages = {9}, year = {2020}, abstract = {India is facing a double burden of malnourishment with co-existences of under- and over-nourishment. Various socioeconomic factors play an essential role in determining dietary choices. Agriculture is one of the major emitters of greenhouse gases (GHGs) in India, contributing 18\% of total emissions. It also consumes freshwater and uses land significantly. We identify eleven Indian diets by applying k-means cluster analysis on latest data from the Indian household consumer expenditure survey. The diets vary in calorie intake [2289-3218 kcal/Consumer Unit (CU)/day] and dietary composition. Estimated embodied GHG emissions in the diets range from 1.36 to 3.62 kg CO2eq./CU/day, land footprint from 4 to 5.45 m(2)/CU/day, whereas water footprint varies from 2.13 to 2.97m(3)/CU/day. Indian diets deviate from a healthy reference diet either with too much or too little consumption of certain food groups. Overall, cereals, sugar, and dairy products intake are higher. In contrast, the consumption of fruits and vegetables, pulses, and nuts is lower than recommended. Our study contributes to deriving required polices for the sustainable transformation of food systems in India to eliminate malnourishment and to reduce the environmental implications of the food systems. (c) 2020 Elsevier B.V. All rights reserved.}, language = {en} } @article{AudretschKritikosSchiersch2020, author = {Audretsch, David B. and Kritikos, Alexander and Schiersch, Alexander}, title = {Microfirms and innovation in the service sector}, series = {Small business economics}, volume = {55}, journal = {Small business economics}, number = {4}, publisher = {Springer Science + Business Media B.V.}, address = {Dordrecht}, issn = {0921-898X}, doi = {10.1007/s11187-020-00366-4}, pages = {997 -- 1018}, year = {2020}, abstract = {In the context of microfirms, this paper analyzes whether the link between the three aspects involving innovative activities—R\&D, innovative output, and productivity—hold for knowledge-intensive services. With especially high start-up rates and the majority of employees in microfirms, knowledge-intensive services (KIS) have a starkly different profile from manufacturing. Results from our structural models indicate that KIS firms benefit from innovation activities through increased labor productivity with highly skilled employees being similarly important compared to R\&D for creating innovation output in microfirms. Moreover, the firm size advantage of large firms found for manufacturing almost disappears in KIS, with start-ups and young firms having a higher probability of initiating innovation activities and of successfully turning knowledge into innovation output than mature firms.}, language = {en} } @article{AustinBondueElsner2020, author = {Austin, Gina and Bond{\"u}, Rebecca and Elsner, Birgit}, title = {Executive function, theory of mind, and conduct-problem symptoms in middle childhood}, series = {Frontiers in psychology}, volume = {11}, journal = {Frontiers in psychology}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2020.00539}, pages = {12}, year = {2020}, abstract = {Studies show relations between executive function (EF), Theory of Mind (ToM), and conduct-problem (CP) symptoms. However, many studies have involved cross-sectional data, small clinical samples, pre-school children, and/or did not consider potential mediation effects. The present study examined the longitudinal relations between EF, ToM abilities, and CP symptoms in a population-based sample of 1,657 children between 6 and 11 years (T1: M = 8.3 years, T2: M = 9.1 years; 51.9\% girls). We assessed EF skills and ToM abilities via computerized tasks at first measurement (T1), CP symptoms were rated via parent questionnaires at T1 and approximately 1 year later (T2). Structural-equation models showed a negative relation between T1 EF and T2 CP symptoms even when controlling for attention-deficit hyperactivity disorder (ADHD) symptoms and other variables. This relation was fully mediated by T1 ToM abilities. The study shows how children's abilities to control their thoughts and behaviors and to understand others' mental states interact in the development of CP symptoms.}, language = {en} } @phdthesis{Autenrieth2020, author = {Autenrieth, Marijke}, title = {Population genomics of two odontocetes in the North Atlantic and adjacent waters}, school = {Universit{\"a}t Potsdam}, pages = {IX, 110}, year = {2020}, abstract = {Due to continuously intensifying human usage of the marine environment worldwide ranging cetaceans face an increasing number of threats. Besides whaling, overfishing and by-catch, new technical developments increase the water and noise pollution, which can negatively affect marine species. Cetaceans are especially prone to these influences, being at the top of the food chain and therefore accumulating toxins and contaminants. Furthermore, they are extremely noise sensitive due to their highly developed hearing sense and echolocation ability. As a result, several cetacean species were brought to extinction during the last century or are now classified as critically endangered. This work focuses on two odontocetes. It applies and compares different molecular methods for inference of population status and adaptation, with implications for conservation. The worldwide distributed sperm whale (Physeter macrocephalus) shows a matrilineal population structure with predominant male dispersal. A recently stranded group of male sperm whales provided a unique opportunity to investigate male grouping for the first time. Based on the mitochondrial control region, I was able to infer that male bachelor groups comprise multiple matrilines, hence derive from different social groups, and that they represent the genetic variability of the entire North Atlantic. The harbor porpoise (Phocoena phocoena) occurs only in the northern hemisphere. By being small and occurring mostly in coastal habitats it is especially prone to human disturbance. Since some subspecies and subpopulations are critically endangered, it is important to generate and provide genetic markers with high resolution to facilitate population assignment and subsequent protection measurements. Here, I provide the first harbour porpoise whole genome, in high quality and including a draft annotation. Using it for mapping ddRAD seq data, I identify genome wide SNPs and, together with a fragment of the mitochondrial control region, inferred the population structure of its North Atlantic distribution range. The Belt Sea harbors a distinct subpopulation oppose to the North Atlantic, with a transition zone in the Kattegat. Within the North Atlantic I could detect subtle genetic differentiation between western (Canada-Iceland) and eastern (North Sea) regions, with support for a German North Sea breading ground around the Isle of Sylt. Further, I was able to detect six outlier loci which show isolation by distance across the investigated sampling areas. In employing different markers, I could show that single maker systems as well as genome wide data can unravel new information about population affinities of odontocetes. Genome wide data can facilitate investigation of adaptations and evolutionary history of the species and its populations. Moreover, they facilitate population genetic investigations, providing a high resolution, and hence allowing for detection of subtle population structuring especially important for highly mobile cetaceans.}, language = {en} } @article{AvetisyanLagoVasishth2020, author = {Avetisyan, Serine and Lago, Sol and Vasishth, Shravan}, title = {Does case marking affect agreement attraction in comprehension?}, series = {Journal of memory and language}, volume = {112}, journal = {Journal of memory and language}, publisher = {Elsevier}, address = {San Diego}, issn = {0749-596X}, doi = {10.1016/j.jml.2020.104087}, pages = {18}, year = {2020}, abstract = {Previous studies have suggested that distinctive case marking on noun phrases reduces attraction effects in production, i.e., the tendency to produce a verb that agrees with a nonsubject noun. An important open question is whether attraction effects are modulated by case information in sentence comprehension. To address this question, we conducted three attraction experiments in Armenian, a language with a rich and productive case system. The experiments showed clear attraction effects, and they also revealed an overall role of case marking such that participants showed faster response and reading times when the nouns in the sentence had different case. However, we found little indication that distinctive case marking modulated attraction effects. We present a theoretical proposal of how case and number information may be used differentially during agreement licensing in comprehension. More generally, this work sheds light on the nature of the retrieval cues deployed when completing morphosyntactic dependencies.}, language = {en} } @article{AwadMetzler2020, author = {Awad, Emad and Metzler, Ralf}, title = {Crossover dynamics from superdiffusion to subdiffusion}, series = {Fractional calculus and applied analysis : an international journal for theory and applications}, volume = {23}, journal = {Fractional calculus and applied analysis : an international journal for theory and applications}, number = {1}, publisher = {De Gruyter}, address = {Berlin ; Boston}, issn = {1311-0454}, doi = {10.1515/fca-2020-0003}, pages = {55 -- 102}, year = {2020}, abstract = {The Cattaneo or telegrapher's equation describes the crossover from initial ballistic to normal diffusion. Here we study and survey time-fractional generalisations of this equation that are shown to produce the crossover of the mean squared displacement from superdiffusion to subdiffusion. Conditional solutions are derived in terms of Fox H-functions and the dth-order moments as well as the diffusive flux of the different models are derived. Moreover, the concept of the distribution-like is proposed as an alternative to the probability density function.}, language = {en} } @article{AyBrysonWeckHeinzeetal.2020, author = {Ay-Bryson, Destina Sevde and Weck, Florian and Heinze, Peter Eric and Lang, Thomas and K{\"u}hne, Franziska}, title = {Can psychotherapy trainees distinguish standardized patients from real patients?}, series = {Zeitschrift f{\"u}r Klinische Psychologie und Psychotherapie}, volume = {49}, journal = {Zeitschrift f{\"u}r Klinische Psychologie und Psychotherapie}, number = {3}, publisher = {Hogrefe}, address = {G{\"o}ttingen}, issn = {1616-3443}, doi = {10.1026/1616-3443/a000594}, pages = {182 -- 190}, year = {2020}, abstract = {Background: Under the new psychotherapy law in Germany, standardized patients (SPs) are to become a standard component inpsychotherapy training, even though little is known about their authenticity.Objective:The present pilot study explored whether, followingan exhaustive two-day SP training, psychotherapy trainees can distinguish SPs from real patients. Methods: Twenty-eight psychotherapytrainees (M= 28.54 years of age,SD= 3.19) participated as blind raters. They evaluated six video-recorded therapy segments of trained SPsand real patients using the Authenticity of Patient Demonstrations Scale. Results: The authenticity scores of real patients and SPs did notdiffer (p= .43). The descriptive results indicated that the highest score of authenticity was given to an SP. Further, the real patients did notdiffer significantly from the SPs concerning perceived impairment (p= .33) and the likelihood of being a real patient (p= .52). Conclusions: The current results suggest that psychotherapy trainees were unable to distinguish the SPs from real patients. We therefore stronglyrecommend incorporating training SPs before application. Limitations and future research directions are discussed.}, language = {en} } @misc{AyzelSchefferHeistermann2020, author = {Ayzel, Georgy and Scheffer, Tobias and Heistermann, Maik}, title = {RainNet v1.0}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {964}, issn = {1866-8372}, doi = {10.25932/publishup-47294}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472942}, pages = {16}, year = {2020}, abstract = {In this study, we present RainNet, a deep convolutional neural network for radar-based precipitation nowcasting. Its design was inspired by the U-Net and SegNet families of deep learning models, which were originally designed for binary segmentation tasks. RainNet was trained to predict continuous precipitation intensities at a lead time of 5min, using several years of quality-controlled weather radar composites provided by the German Weather Service (DWD). That data set covers Germany with a spatial domain of 900km × 900km and has a resolution of 1km in space and 5min in time. Independent verification experiments were carried out on 11 summer precipitation events from 2016 to 2017. In order to achieve a lead time of 1h, a recursive approach was implemented by using RainNet predictions at 5min lead times as model inputs for longer lead times. In the verification experiments, trivial Eulerian persistence and a conventional model based on optical flow served as benchmarks. The latter is available in the rainymotion library and had previously been shown to outperform DWD's operational nowcasting model for the same set of verification events. RainNet significantly outperforms the benchmark models at all lead times up to 60min for the routine verification metrics mean absolute error (MAE) and the critical success index (CSI) at intensity thresholds of 0.125, 1, and 5mm h⁻¹. However, rainymotion turned out to be superior in predicting the exceedance of higher intensity thresholds (here 10 and 15mm h⁻¹). The limited ability of RainNet to predict heavy rainfall intensities is an undesirable property which we attribute to a high level of spatial smoothing introduced by the model. At a lead time of 5min, an analysis of power spectral density confirmed a significant loss of spectral power at length scales of 16km and below. Obviously, RainNet had learned an optimal level of smoothing to produce a nowcast at 5min lead time. In that sense, the loss of spectral power at small scales is informative, too, as it reflects the limits of predictability as a function of spatial scale. Beyond the lead time of 5min, however, the increasing level of smoothing is a mere artifact - an analogue to numerical diffusion - that is not a property of RainNet itself but of its recursive application. In the context of early warning, the smoothing is particularly unfavorable since pronounced features of intense precipitation tend to get lost over longer lead times. Hence, we propose several options to address this issue in prospective research, including an adjustment of the loss function for model training, model training for longer lead times, and the prediction of threshold exceedance in terms of a binary segmentation task. Furthermore, we suggest additional input data that could help to better identify situations with imminent precipitation dynamics. The model code, pretrained weights, and training data are provided in open repositories as an input for such future studies.}, language = {en} } @article{AyzelSchefferHeistermann2020, author = {Ayzel, Georgy and Scheffer, Tobias and Heistermann, Maik}, title = {RainNet v1.0}, series = {Geoscientific Model Development}, volume = {13}, journal = {Geoscientific Model Development}, number = {6}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1991-959X}, doi = {10.5194/gmd-13-2631-2020}, pages = {2631 -- 2644}, year = {2020}, abstract = {In this study, we present RainNet, a deep convolutional neural network for radar-based precipitation nowcasting. Its design was inspired by the U-Net and SegNet families of deep learning models, which were originally designed for binary segmentation tasks. RainNet was trained to predict continuous precipitation intensities at a lead time of 5min, using several years of quality-controlled weather radar composites provided by the German Weather Service (DWD). That data set covers Germany with a spatial domain of 900km × 900km and has a resolution of 1km in space and 5min in time. Independent verification experiments were carried out on 11 summer precipitation events from 2016 to 2017. In order to achieve a lead time of 1h, a recursive approach was implemented by using RainNet predictions at 5min lead times as model inputs for longer lead times. In the verification experiments, trivial Eulerian persistence and a conventional model based on optical flow served as benchmarks. The latter is available in the rainymotion library and had previously been shown to outperform DWD's operational nowcasting model for the same set of verification events. RainNet significantly outperforms the benchmark models at all lead times up to 60min for the routine verification metrics mean absolute error (MAE) and the critical success index (CSI) at intensity thresholds of 0.125, 1, and 5mm h⁻¹. However, rainymotion turned out to be superior in predicting the exceedance of higher intensity thresholds (here 10 and 15mm h⁻¹). The limited ability of RainNet to predict heavy rainfall intensities is an undesirable property which we attribute to a high level of spatial smoothing introduced by the model. At a lead time of 5min, an analysis of power spectral density confirmed a significant loss of spectral power at length scales of 16km and below. Obviously, RainNet had learned an optimal level of smoothing to produce a nowcast at 5min lead time. In that sense, the loss of spectral power at small scales is informative, too, as it reflects the limits of predictability as a function of spatial scale. Beyond the lead time of 5min, however, the increasing level of smoothing is a mere artifact - an analogue to numerical diffusion - that is not a property of RainNet itself but of its recursive application. In the context of early warning, the smoothing is particularly unfavorable since pronounced features of intense precipitation tend to get lost over longer lead times. Hence, we propose several options to address this issue in prospective research, including an adjustment of the loss function for model training, model training for longer lead times, and the prediction of threshold exceedance in terms of a binary segmentation task. Furthermore, we suggest additional input data that could help to better identify situations with imminent precipitation dynamics. The model code, pretrained weights, and training data are provided in open repositories as an input for such future studies.}, language = {en} } @article{AzadianMajlesiJafarnezhadgeroetal.2020, author = {Azadian, Elaheh and Majlesi, Mahdi and Jafarnezhadgero, Amir Ali and Granacher, Urs}, title = {The impact of hearing loss on three-dimensional lower limb joint torques during walking in prepubertal boys}, series = {Journal of bodywork and movement therapies}, volume = {24}, journal = {Journal of bodywork and movement therapies}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1360-8592}, doi = {10.1016/j.jbmt.2019.10.013}, pages = {123 -- 129}, year = {2020}, abstract = {Introduction: In children, the impact of hearing loss on biomechanical gait parameters is not well understood. Thus, the objectives of this study were to examine three-dimensional lower limb joint torques in deaf compared to age-matched healthy (hearing) children while walking at preferred gait speed. Methods: Thirty prepubertal boys aged 8-14 were enrolled in this study and divided into a group with hearing loss (deaf group) and an age-matched healthy control. Three-dimensional joint torques were analyzed during barefoot walking at preferred speed using Kistler force plates and a Vicon motion capture system. Results: Findings revealed that boys with hearing loss showed lower joint torques in ankle evertors, knee flexors, abductors and internal rotators as well as in hip internal rotators in both, the dominant and non-dominant lower limbs (all p < 0.05; d = 1.23-7.00; 14-79\%). Further, in the dominant limb, larger peak ankle dorsiflexor (p < 0.001; d = 1.83; 129\%), knee adductor (p < 0.001; d = 3.20; 800\%), and hip adductor torques (p < 0.001; d = 2.62; 350\%) were found in deaf participants compared with controls. Conclusion: The observed altered lower limb torques during walking are indicative of unstable gait in children with hearing loss. More research is needed to elucidate whether physical training (e.g., balance and/or gait training) has the potential to improve walking performance in this patient group. (C) 2019 Elsevier Ltd. All rights reserved.}, language = {en} } @article{AzzaliPaycha2020, author = {Azzali, Sara and Paycha, Sylvie}, title = {Spectral zeta-invariants lifted to coverings}, series = {Transactions of the American Mathematical Society}, volume = {373}, journal = {Transactions of the American Mathematical Society}, number = {9}, publisher = {American Mathematical Society}, address = {Providence, RI}, issn = {0002-9947}, doi = {10.1090/tran/8067}, pages = {6185 -- 6226}, year = {2020}, abstract = {The canonical trace and the Wodzicki residue on classical pseudo-differential operators on a closed manifold are characterised by their locality and shown to be preserved under lifting to the universal covering as a result of their local feature. As a consequence, we lift a class of spectral zeta-invariants using lifted defect formulae which express discrepancies of zeta-regularised traces in terms of Wodzicki residues. We derive Atiyah's L-2-index theorem as an instance of the Z(2)-graded generalisation of the canonical lift of spectral zeta-invariants and we show that certain lifted spectral zeta-invariants for geometric operators are integrals of Pontryagin and Chern forms.}, language = {en} } @misc{BackhausEngbertRothkegeletal.2020, author = {Backhaus, Daniel and Engbert, Ralf and Rothkegel, Lars Oliver Martin and Trukenbrod, Hans Arne}, title = {Task-dependence in scene perception: Head unrestrained viewing using mobile eye-tracking}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {5}, issn = {1866-8364}, doi = {10.25932/publishup-51912}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-519124}, pages = {23}, year = {2020}, abstract = {Real-world scene perception is typically studied in the laboratory using static picture viewing with restrained head position. Consequently, the transfer of results obtained in this paradigm to real-word scenarios has been questioned. The advancement of mobile eye-trackers and the progress in image processing, however, permit a more natural experimental setup that, at the same time, maintains the high experimental control from the standard laboratory setting. We investigated eye movements while participants were standing in front of a projector screen and explored images under four specific task instructions. Eye movements were recorded with a mobile eye-tracking device and raw gaze data were transformed from head-centered into image-centered coordinates. We observed differences between tasks in temporal and spatial eye-movement parameters and found that the bias to fixate images near the center differed between tasks. Our results demonstrate that current mobile eye-tracking technology and a highly controlled design support the study of fine-scaled task dependencies in an experimental setting that permits more natural viewing behavior than the static picture viewing paradigm.}, language = {en} } @article{BackhausEngbertRothkegeletal.2020, author = {Backhaus, Daniel and Engbert, Ralf and Rothkegel, Lars Oliver Martin and Trukenbrod, Hans Arne}, title = {Task-dependence in scene perception: Head unrestrained viewing using mobile eye-tracking}, series = {Journal of vision}, volume = {20}, journal = {Journal of vision}, number = {5}, publisher = {Association for Research in Vision and Opthalmology}, address = {Rockville}, issn = {1534-7362}, doi = {10.1167/jov.20.5.3}, pages = {1 -- 21}, year = {2020}, abstract = {Real-world scene perception is typically studied in the laboratory using static picture viewing with restrained head position. Consequently, the transfer of results obtained in this paradigm to real-word scenarios has been questioned. The advancement of mobile eye-trackers and the progress in image processing, however, permit a more natural experimental setup that, at the same time, maintains the high experimental control from the standard laboratory setting. We investigated eye movements while participants were standing in front of a projector screen and explored images under four specific task instructions. Eye movements were recorded with a mobile eye-tracking device and raw gaze data were transformed from head-centered into image-centered coordinates. We observed differences between tasks in temporal and spatial eye-movement parameters and found that the bias to fixate images near the center differed between tasks. Our results demonstrate that current mobile eye-tracking technology and a highly controlled design support the study of fine-scaled task dependencies in an experimental setting that permits more natural viewing behavior than the static picture viewing paradigm.}, language = {en} } @article{BaerenzungHolschneiderWichtetal.2020, author = {Baerenzung, Julien and Holschneider, Matthias and Wicht, Johannes and Lesur, Vincent and Sanchez, Sabrina}, title = {The Kalmag model as a candidate for IGRF-13}, series = {Earth, planets and space}, volume = {72}, journal = {Earth, planets and space}, number = {1}, publisher = {Springer}, address = {New York}, issn = {1880-5981}, doi = {10.1186/s40623-020-01295-y}, pages = {13}, year = {2020}, abstract = {We present a new model of the geomagnetic field spanning the last 20 years and called Kalmag. Deriving from the assimilation of CHAMP and Swarm vector field measurements, it separates the different contributions to the observable field through parameterized prior covariance matrices. To make the inverse problem numerically feasible, it has been sequentialized in time through the combination of a Kalman filter and a smoothing algorithm. The model provides reliable estimates of past, present and future mean fields and associated uncertainties. The version presented here is an update of our IGRF candidates; the amount of assimilated data has been doubled and the considered time window has been extended from [2000.5, 2019.74] to [2000.5, 2020.33].}, language = {en} } @article{BaesSobolevGeryaetal.2020, author = {Baes, Marzieh and Sobolev, Stephan and Gerya, Taras V. and Brune, Sascha}, title = {Plume-induced subduction initiation}, series = {Geochemistry, geophysics, geosystems}, volume = {21}, journal = {Geochemistry, geophysics, geosystems}, number = {2}, publisher = {American Geophysical Union}, address = {Washington}, issn = {1525-2027}, doi = {10.1029/2019GC008663}, pages = {19}, year = {2020}, abstract = {Initiation of subduction following the impingement of a hot buoyant mantle plume is one of the few scenarios that allow breaking the lithosphere and recycling a stagnant lid without requiring any preexisting weak zones. Here, we investigate factors controlling the number and shape of retreating subducting slabs formed by plume-lithosphere interaction. Using 3-D thermomechanical models we show that the deformation regime, which defines formation of single-slab or multi-slab subduction, depends on several parameters such as age of oceanic lithosphere, thickness of the crust and large-scale lithospheric extension rate. Our model results indicate that on present-day Earth multi-slab plume-induced subduction is initiated only if the oceanic lithosphere is relatively young (<30-40 Myr, but >10 Myr), and the crust has a typical thickness of 8 km. In turn, development of single-slab subduction is facilitated by older lithosphere and pre-imposed extensional stresses. In early Earth, plume-lithosphere interaction could have led to formation of either episodic short-lived circular subduction when the oceanic lithosphere was young or to multi-slab subduction when the lithosphere was old.}, language = {en} } @article{BaesSobolevGeryaetal.2020, author = {Baes, Marzieh and Sobolev, Stephan V. and Gerya, Taras V. and Brune, Sascha}, title = {Subduction initiation by Plume-Plateau interaction}, series = {Geochemistry, geophysics, geosystems}, volume = {21}, journal = {Geochemistry, geophysics, geosystems}, number = {8}, publisher = {American Geophysical Union}, address = {Washington}, issn = {1525-2027}, doi = {10.1029/2020GC009119}, pages = {17}, year = {2020}, abstract = {It has recently been demonstrated that the interaction of a mantle plume with sufficiently old oceanic lithosphere can initiate subduction. However, the existence of large lithospheric heterogeneities, such as a buoyant plateau, in proximity to a rising plume head may potentially hinder the formation of a new subduction zone. Here, we investigate this scenario by means of 3-D numerical thermomechanical modeling. We explore how plume-lithosphere interaction is affected by lithospheric age, relative location of plume head and plateau border, and the strength of the oceanic crust. Our numerical experiments suggest four different geodynamic regimes: (a) oceanic trench formation, (b) circular oceanic-plateau trench formation, (c) plateau trench formation, and (d) no trench formation. We show that regardless of the age and crustal strength of the oceanic lithosphere, subduction can initiate when the plume head is either below the plateau border or at a distance less than the plume radius from the plateau edge. Crustal heterogeneity facilitates subduction initiation of old oceanic lithosphere. High crustal strength hampers the formation of a new subduction zone when the plume head is located below a young lithosphere containing a thick and strong plateau. We suggest that plume-plateau interaction in the western margin of the Caribbean could have resulted in subduction initiation when the plume head impinged onto the oceanic lithosphere close to the border between plateau and oceanic crust.}, language = {en} } @misc{BaesSobolevGeryaetal.2020, author = {Baes, Marzieh and Sobolev, Stephan Vladimir and Gerya, Taras V. and Brune, Sascha}, title = {Plume-induced subduction initiation}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {2}, issn = {1866-8372}, doi = {10.25932/publishup-52274}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-522742}, pages = {21}, year = {2020}, abstract = {Initiation of subduction following the impingement of a hot buoyant mantle plume is one of the few scenarios that allow breaking the lithosphere and recycling a stagnant lid without requiring any preexisting weak zones. Here, we investigate factors controlling the number and shape of retreating subducting slabs formed by plume-lithosphere interaction. Using 3-D thermomechanical models we show that the deformation regime, which defines formation of single-slab or multi-slab subduction, depends on several parameters such as age of oceanic lithosphere, thickness of the crust and large-scale lithospheric extension rate. Our model results indicate that on present-day Earth multi-slab plume-induced subduction is initiated only if the oceanic lithosphere is relatively young (<30-40 Myr, but >10 Myr), and the crust has a typical thickness of 8 km. In turn, development of single-slab subduction is facilitated by older lithosphere and pre-imposed extensional stresses. In early Earth, plume-lithosphere interaction could have led to formation of either episodic short-lived circular subduction when the oceanic lithosphere was young or to multi-slab subduction when the lithosphere was old.}, language = {en} } @article{BahrKolberKabothBahretal.2020, author = {Bahr, Andr{\´e} and Kolber, Gilles and Kaboth-Bahr, Stefanie and Reinhardt, Lutz and Friedrich, Oliver and Pross, J{\"o}rg}, title = {Mega-monsoon variability during the late Triassic}, series = {Sedimentology : the journal of the International Association of Sedimentologists}, volume = {67}, journal = {Sedimentology : the journal of the International Association of Sedimentologists}, number = {2}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {0037-0746}, doi = {10.1111/sed.12668}, pages = {951 -- 970}, year = {2020}, abstract = {The formation of the supercontinent Pangaea during the Permo-Triassic gave rise to an extreme monsoonal climate (often termed 'mega-monsoon') that has been documented by numerous palaeo-records. However, considerable debate exists about the role of orbital forcing in causing humid intervals in an otherwise arid climate. To shed new light on the forcing of monsoonal variability in subtropical Pangaea, this study focuses on sediment facies and colour variability of playa and alluvial fan deposits in an outcrop from the late Carnian (ca 225 Ma) in the southern Germanic Basin, south-western Germany. The sediments were deposited against a background of increasingly arid conditions following the humid Carnian Pluvial Event (ca 234 to 232 Ma). The ca 2 center dot 4 Myr long sedimentary succession studied shows a tripartite long-term evolution, starting with a distal mud-flat facies deposited under arid conditions. This phase was followed by a highly variable playa-lake environment that documents more humid conditions and finally a regression of the playa-lake due to a return of arid conditions. The red-green (a*) and lightness (L*) records show that this long-term variability was overprinted by alternating wet/dry cycles driven by orbital precession and ca 405 kyr eccentricity, without significant influence of obliquity. The absence of obliquity in this record indicates that high-latitude forcing played only a minor role in the southern Germanic Basin during the late Carnian. This is different from the subsequent Norian when high-latitude signals became more pronounced, potentially related to the northward drift of the Germanic Basin. The recurring pattern of pluvial events during the late Triassic demonstrates that orbital forcing, in particular eccentricity, stimulated the occurrence and intensity of wet phases. It also highlights the possibility that the Carnian Pluvial Event, although most likely triggered by enhanced volcanic activity, may also have been modified by an orbital stimulus.}, language = {en} } @article{BakadorovaLazaridesRaufelder2020, author = {Bakadorova, Olga and Lazarides, Rebecca and Raufelder, Diana}, title = {Effects of social and individual school self-concepts on school engagement during adolescence}, series = {European journal of psychology of education : a journal of education and development}, volume = {35}, journal = {European journal of psychology of education : a journal of education and development}, number = {1}, publisher = {Springer Nature}, address = {Lisboa}, issn = {0256-2928}, doi = {10.1007/s10212-019-00423-x}, pages = {73 -- 91}, year = {2020}, abstract = {While school self-concept is an important facilitator of a student's school engagement, previous studies rarely investigated whether it may also explain the change in students' school engagement during secondary school. Moreover, as social relations play an increasingly important role in adolescence, the current research distinguishes between the social and individual school self-concepts of a student. Whereas individual school self-concept uses the perception of a student's own ability in the past in order to estimate perceived current ability, social school self-concept refers to the comparison of a student's own perceived current ability with the current perceived abilities of others. We examined the role of students' individual and social school self-concepts in the development of behavioral and emotional school engagement during the period from grade 8 to grade 9. The sample consisted of 1088 German adolescents at the first measurement time (M-age = 13.70, SD = 0.53; 53.9\% girls). The findings suggested a significant decline in both emotional and behavioral school engagement over the span of 1.5 years. In addition, social-but not individual-school self-concept was associated with the change in both dimensions of school engagement over time, such as it may intensify a student's decline in school engagement levels. This might be due to the fact that students with a high social school self-concept tend to increasingly emphasize competition and comparison and strive for high grades, which lowers students' school participation and identification in the long term.}, language = {en} } @article{BaldSolov'yovMasonetal.2020, author = {Bald, Ilko and Solov'yov, Ilia A. and Mason, Nigel J. and Solov'yov, Andrey V.}, title = {Special issue}, series = {The European physical journal. D, Atomic, molecular, optical and plasma physics}, volume = {74}, journal = {The European physical journal. D, Atomic, molecular, optical and plasma physics}, number = {4}, publisher = {Springer}, address = {Berlin}, issn = {1434-6060}, doi = {10.1140/epjd/e2020-10134-4}, pages = {75 -- 82}, year = {2020}, abstract = {The structure, formation and dynamics of both animate and inanimate matter on the nanoscale are a highly interdisciplinary field of rapidly emerging research engaging a broad community encompassing experimentalists, theorists, and technologists. It is relevant for a large variety of molecular and nanosystems of different origin and composition and concerns numerous phenomena originating from physics, chemistry, biology, or materials science. This Topical Issue presents a collection of original research papers devoted to different aspects of structure and dynamics on the nanoscale. Some of the contributions discuss specific applications of the research results in several modern technologies and in next generation medicine. Most of the works of this topical issue were reported at the Fifth International Conference on Dynamics of Systems on the Nanoscale (DySoN) - the premier forum for the presentation of cutting-edge research in this field that was held in Potsdam, Germany in October of 2018.}, language = {en} } @article{BalischewskiBehrensZehbeetal.2020, author = {Balischewski, Christian and Behrens, Karsten and Zehbe, Kerstin and G{\"u}nter, Christina and Mies, Stefan and Sperlich, Eric and Kelling, Alexandra and Taubert, Andreas}, title = {Ionic liquids with more than one metal}, series = {Chemistry - a European journal}, volume = {26}, journal = {Chemistry - a European journal}, number = {72}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0947-6539}, doi = {10.1002/chem.202003097}, pages = {17504 -- 17513}, year = {2020}, abstract = {Thirteen N-butylpyridinium salts, including three monometallic [C4Py](2)[MCl4], nine bimetallic [C4Py](2)[(M1-xMxCl4)-M-a-Cl-b] and one trimetallic compound [C4Py](2)[(M1-y-zMyMz (c) Cl4)-M-a-M-b] (M=Co, Cu, Mn; x=0.25, 0.50 or 0.75 and y=z=0.33), were synthesized and their structure and thermal and electrochemical properties were studied. All compounds are ionic liquids (ILs) with melting points between 69 and 93 degrees C. X-ray diffraction proves that all ILs are isostructural. The conductivity at room temperature is between 10(-4) and 10(-8) S cm(-1). Some Cu-based ILs reach conductivities of 10(-2) S cm(-1), which is, however, probably due to IL dec. This correlates with the optical bandgap measurements indicating the formation of large bandgap semiconductors. At elevated temperatures approaching the melting points, the conductivities reach up to 1.47x10(-1) S cm(-1) at 70 degrees C. The electrochemical stability windows of the ILs are between 2.5 and 3.0 V.}, language = {en} } @article{BalkBehlLendlein2020, author = {Balk, Maria and Behl, Marc and Lendlein, Andreas}, title = {Actuators based on oligo[(epsilon-caprolactone)-co-glycolide] with accelerated hydrolytic degradation}, series = {MRS advances : a journal of the Materials Research Society (MRS)}, volume = {5}, journal = {MRS advances : a journal of the Materials Research Society (MRS)}, number = {12-13}, publisher = {Cambridge University Press}, address = {New York, NY}, issn = {2059-8521}, doi = {10.1557/adv.2019.447}, pages = {655 -- 666}, year = {2020}, abstract = {Polyester-based shape-memory polymer actuators are multifunctional materials providing reversible macroscopic shape shifts as well as hydrolytic degradability. Here, the function-function interdependencies (between shape shifts and degradation behaviour) will determine actuation performance and its life time. In this work, glycolide units were incorporated in poly(epsilon-caprolactone) based actuator materials in order to achieve an accelerated hydrolytic degradation and to explore the function-function relationship. Three different oligo[(epsilon-caprolactone)-co-glycolide] copolymers (OCGs) with similar molecular weights (10.5 +/- 0.5 kg center dot mol(-1)) including a glycolide content of 8, 16, and 26 mol\% (ratio 1:1:1 wt\%) terminated with methacrylated moieties were crosslinked. The obtained actuators provided a broad melting transition in the range from 27 to 44 degrees C. The hydrolytic degradation of programmed OCG actuators (200\% of elongation) resulted in a reduction of sample mass to 51 wt\% within 21 days at pH = 7.4 and 40 degrees C. Degradation results in a decrease of T-m associated to the actuating units and increasing T-m associated to the skeleton forming units. The actuation capability decreased almost linear as function of time. After 11 days of hydrolytic degradation the shape-memory functionality was lost. Accordingly, a fast degradation behaviour as required, e.g., for actuator materials intended as implant material can be realized.}, language = {en} } @phdthesis{Balt2020, author = {Balt, Miriam}, title = {Assessment of early numeracy development}, school = {Universit{\"a}t Potsdam}, pages = {130}, year = {2020}, abstract = {Early numeracy is one of the strongest predictors for later success in school mathematics (e.g., Duncan et al., 2007). The main goal of first grade mathematics teachers should therefore be to provide learning opportunities that enable all students to develop sound early numeracy skills. Developmental models, or learning progressions, can describe how early numerical understanding typically develops. Assessments that are aligned to empirically validated learning progressions can support teachers to understand their students learning better and target instruction accordingly. To date, there have been no progression-based instruments made available for German teachers to monitor their students' progress in the domain of early numeracy. This dissertation contributes to the design of such an instrument. The first study analysed the suitability of early numeracy assessments currently used in German primary schools at school entry to identify students' individual starting points for subsequent progress monitoring. The second study described the development of progression-based items and investigated the items in regards to main test quality criteria, such as reliability, validity, and test fairness, to find a suitable item pool to build targeted tests. The third study described the construction of the progress monitoring measure, referred to as the learning progress assessment (LPA). The study investigated the extent to which the LPA was able to monitor students' individual learning progress in early numeracy over time. The results of the first study indicated that current school entry assessments were not able to provide meaningful information about the students' initial learning status. Thus, the MARKO-D test (Ricken, Fritz, \& Balzer, 2013) was used to determine the students' initial numerical understanding in the other two studies, because it has been shown to be an effective measure of conceptual numerical understanding (Fritz, Ehlert, \& Leutner, 2018). Both studies provided promising evidence for the quality of the LPA and its ability to detect changes in numerical understanding over the course of first grade. The studies of this dissertation can be considered an important step in the process of designing an empirically validated instrument that supports teachers to monitor their students' early numeracy development and to adjust their teaching accordingly to enhance school achievement.}, language = {en} } @article{BandaraBryan2020, author = {Bandara, Lashi and Bryan, Paul}, title = {Heat kernels and regularity for rough metrics on smooth manifolds}, series = {Mathematische Nachrichten}, volume = {293}, journal = {Mathematische Nachrichten}, number = {12}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0025-584X}, doi = {10.1002/mana.201800459}, pages = {2255 -- 2270}, year = {2020}, abstract = {We consider rough metrics on smooth manifolds and corresponding Laplacians induced by such metrics. We demonstrate that globally continuous heat kernels exist and are Holder continuous locally in space and time. This is done via local parabolic Harnack estimates for weak solutions of operators in divergence form with bounded measurable coefficients in weighted Sobolev spaces.}, language = {en} } @phdthesis{Banerjee2020, author = {Banerjee, Pallavi}, title = {Glycosylphosphatidylinositols (GPIs) and GPI-anchored proteins tethered to lipid bilayers}, doi = {10.25932/publishup-48956}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-489561}, school = {Universit{\"a}t Potsdam}, pages = {xv, 141}, year = {2020}, abstract = {Glycosylphosphatidylinositols (GPIs) are highly complex glycolipids that serve as membrane anchors to a large variety of eukaryotic proteins. These are covalently attached to a group of peripheral proteins called GPI-anchored proteins (GPI-APs) through a post-translational modification in the endoplasmic reticulum. The GPI anchor is a unique structure composed of a glycan, with phospholipid tail at one end and a phosphoethanolamine linker at the other where the protein attaches. The glycan part of the GPI comprises a conserved pseudopentasaccharide core that could branch out to carry additional glycosyl or phosphoethanolamine units. GPI-APs are involved in a diverse range of cellular processes, few of which are signal transduction, protein trafficking, pathogenesis by protozoan parasites like the malaria- causing parasite Plasmodium falciparum. GPIs can also exist freely on the membrane surface without an attached protein such as those found in parasites like Toxoplasma gondii, the causative agent of Toxoplasmosis. These molecules are both structurally and functionally diverse, however, their structure-function relationship is still poorly understood. This is mainly because no clear picture exists regarding how the protein and the glycan arrange with respect to the lipid layer. Direct experimental evidence is rather scarce, due to which inconclusive pictures have emerged, especially regarding the orientation of GPIs and GPI-APs on membrane surfaces and the role of GPIs in membrane organization. It appears that computational modelling through molecular dynamics simulations would be a useful method to make progress. In this thesis, we attempt to explore characteristics of GPI anchors and GPI-APs embedded in lipid bilayers by constructing molecular models at two different resolutions - all-atom and coarse-grained. First, we show how to construct a modular molecular model of GPIs and GPI-anchored proteins that can be readily extended to a broad variety of systems, addressing the micro-heterogeneity of GPIs. We do so by creating a hybrid link to which GPIs of diverse branching and lipid tails of varying saturation with their optimized force fields, GLYCAM06 and Lipid14 respectively, can be attached. Using microsecond simulations, we demonstrate that GPI prefers to "flop-down" on the membrane, thereby, strongly interacting with the lipid heads, over standing upright like a "lollipop". Secondly, we extend the model of the GPI core to carry out a systematic study of the structural aspects of GPIs carrying different side chains (parasitic and human GPI variants) inserted in lipid bilayers. Our results demonstrate the importance of the side branch residues as these are the most accessible, and thereby, recognizable epitopes. This finding qualitatively agrees with experimental observations that highlight the role of the side branches in immunogenicity of GPIs and the specificity thereof. The overall flop-down orientation of the GPIs with respect to the bilayer surface presents the side chain residues to face the solvent. Upon attaching the green fluorescent protein (GFP) to the GPI, it is seen to lie in close proximity to the bilayer, interacting both with the lipid heads and glycan part of the GPI. However the orientation of GFP is sensitive to the type of GPI it is attached to. Finally, we construct a coarse-grained model of the GPI and GPI-anchored GFP using a modified version of the MARTINI force-field, using which the timescale is enhanced by at least an order of magnitude compared to the atomistic system. This study provides a theoretical perspective on the conformational behavior of the GPI core and some of its branched variations in presence of lipid bilayers, as well as draws comparisons with experimental observations. Our modular atomistic model of GPI can be further employed to study GPIs of variable branching, and thereby, aid in designing future experiments especially in the area of vaccines and drug therapies. Our coarse-grained model can be used to study dynamic aspects of GPIs and GPI-APs w.r.t plasma membrane organization. Furthermore, the backmapping technique of converting coarse-grained trajectory back to the atomistic model would enable in-depth structural analysis with ample conformational sampling.}, language = {en} } @article{BanerjeeLipowskySanter2020, author = {Banerjee, Pallavi and Lipowsky, Reinhard and Santer, Mark}, title = {Coarse-grained molecular model for the Glycosylphosphatidylinositol anchor with and without protein}, series = {Journal of Chemical Theory and Computation}, volume = {16}, journal = {Journal of Chemical Theory and Computation}, number = {6}, publisher = {ACS Publications}, address = {Washington DC}, issn = {1549-9626}, doi = {10.1021/acs.jctc.0c00056}, pages = {15}, year = {2020}, abstract = {Glycosylphosphatidylinositol (GPI) anchors are a unique class of complex glycolipids that anchor a great variety of proteins to the extracellular leaflet of plasma membranes of eukaryotic cells. These anchors can exist either with or without an attached protein called GPI-anchored protein (GPI-AP) both in vitro and in vivo. Although GPIs are known to participate in a broad range of cellular functions, it is to a large extent unknown how these are related to GPI structure and composition. Their conformational flexibility and microheterogeneity make it difficult to study them experimentally. Simplified atomistic models are amenable to all-atom computer simulations in small lipid bilayer patches but not suitable for studying their partitioning and trafficking in complex and heterogeneous membranes. Here, we present a coarse-grained model of the GPI anchor constructed with a modified version of the MARTINI force field that is suited for modeling carbohydrates, proteins, and lipids in an aqueous environment using MARTINI's polarizable water. The nonbonded interactions for sugars were reparametrized by calculating their partitioning free energies between polar and apolar phases. In addition, sugar-sugar interactions were optimized by adjusting the second virial coefficients of osmotic pressures for solutions of glucose, sucrose, and trehalose to match with experimental data. With respect to the conformational dynamics of GPI-anchored green fluorescent protein, the accessible time scales are now at least an order of magnitude larger than for the all-atom system. This is particularly important for fine-tuning the mutual interactions of lipids, carbohydrates, and amino acids when comparing to experimental results. We discuss the prospective use of the coarse-grained GPI model for studying protein-sorting and trafficking in membrane models.}, language = {en} } @misc{BanerjeeLipowskySanter2020, author = {Banerjee, Pallavi and Lipowsky, Reinhard and Santer, Mark}, title = {Coarse-grained molecular model for the Glycosylphosphatidylinositol anchor with and without protein}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {6}, issn = {1866-8372}, doi = {10.25932/publishup-52374}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-523742}, pages = {17}, year = {2020}, abstract = {Glycosylphosphatidylinositol (GPI) anchors are a unique class of complex glycolipids that anchor a great variety of proteins to the extracellular leaflet of plasma membranes of eukaryotic cells. These anchors can exist either with or without an attached protein called GPI-anchored protein (GPI-AP) both in vitro and in vivo. Although GPIs are known to participate in a broad range of cellular functions, it is to a large extent unknown how these are related to GPI structure and composition. Their conformational flexibility and microheterogeneity make it difficult to study them experimentally. Simplified atomistic models are amenable to all-atom computer simulations in small lipid bilayer patches but not suitable for studying their partitioning and trafficking in complex and heterogeneous membranes. Here, we present a coarse-grained model of the GPI anchor constructed with a modified version of the MARTINI force field that is suited for modeling carbohydrates, proteins, and lipids in an aqueous environment using MARTINI's polarizable water. The nonbonded interactions for sugars were reparametrized by calculating their partitioning free energies between polar and apolar phases. In addition, sugar-sugar interactions were optimized by adjusting the second virial coefficients of osmotic pressures for solutions of glucose, sucrose, and trehalose to match with experimental data. With respect to the conformational dynamics of GPI-anchored green fluorescent protein, the accessible time scales are now at least an order of magnitude larger than for the all-atom system. This is particularly important for fine-tuning the mutual interactions of lipids, carbohydrates, and amino acids when comparing to experimental results. We discuss the prospective use of the coarse-grained GPI model for studying protein-sorting and trafficking in membrane models.}, language = {en} } @misc{BarboliniWoutersenDupontNivetetal.2020, author = {Barbolini, Natasha and Woutersen, Amber and Dupont-Nivet, Guillaume and Silvestro, Daniele and Tardif-Becquet, Delphine and Coster, Pauline M. C. and Meijer, Niels and Chang, Cun and Zhang, Hou-Xi and Licht, Alexis and Rydin, Catarina and Koutsodendris, Andreas and Han, Fang and Rohrmann, Alexander and Liu, Xiang-Jun and Zhang, Y. and Donnadieu, Yannick and Fluteau, Frederic and Ladant, Jean-Baptiste and Le Hir, Guillaume and Hoorn, M. Carina}, title = {Cenozoic evolution of the steppe-desert biome in Central Asia}, series = {Science Advances}, volume = {6}, journal = {Science Advances}, number = {41}, publisher = {American Association for the Advancement of Science}, address = {Washington}, issn = {2375-2548}, doi = {10.1126/sciadv.abb8227}, pages = {16}, year = {2020}, abstract = {The origins and development of the arid and highly seasonal steppe-desert biome in Central Asia, the largest of its kind in the world, remain largely unconstrained by existing records. It is unclear how Cenozoic climatic, geological, and biological forces, acting at diverse spatial and temporal scales, shaped Central Asian ecosystems through time. Our synthesis shows that the Central Asian steppe-desert has existed since at least Eocene times but experienced no less than two regime shifts, one at the Eocene-Oligocene Transition and one in the mid-Miocene. These shifts separated three successive "stable states," each characterized by unique floral and faunal structures. Past responses to disturbance in the Asian steppe-desert imply that modern ecosystems are unlikely to recover their present structures and diversity if forced into a new regime. This is of concern for Asian steppes today, which are being modified for human use and lost to desertification at unprecedented rates.}, language = {en} } @phdthesis{Barbosa2020, author = {Barbosa, Lu{\´i}s Romero}, title = {Groundwater recharge in tropical wet regions via GIS-based and cosmic-ray neutron sensing}, doi = {10.25932/publishup-46064}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-460641}, school = {Universit{\"a}t Potsdam}, pages = {XXVI, 175}, year = {2020}, abstract = {Studies on the unsustainable use of groundwater resources are still considered incipient since it is frequently a poorly understood and managed, devalued and inadequately protected natural resource. Groundwater Recharge (GWR) is one of the most challenging elements to estimate since it can rarely be measured directly and cannot easily be derived from existing data. To overcome these limitations, many hydro(geo)logists have combined different approaches to estimate large-scale GWR, namely: remote sensing products, such as IMERG product; Water Budget Equation, also in combination with hydrological models, and; Geographic Information System (GIS), using estimation formulas. For intermediary-scale GWR estimation, there exist: Non-invasive Cosmic-Ray Neutron Sensing (CRNS); wireless networks from local soil probes; and soil hydrological models, such as HYDRUS. Accordingly, this PhD thesis aims, on the one hand, to demonstrate a GIS-based model coupling for estimating the GWR distribution on a large scale in tropical wet basins. On the other hand, it aims to use the time series from CRNS and invasive soil moisture probes to inversely calibrate the soil hydraulic properties, and based on this, estimating the intermediary-scale GWR using a soil hydrological model. For such purpose, two tropical wet basins located in a complex sedimentary aquifer in the coastal Northeast region of Brazil were selected. These are the Jo{\~a}o Pessoa Case Study Area and the Guara{\´i}ra Experimental Basin. Several satellite products in the first area were used as input to the GIS-based water budget equation model for estimating the water balance components and GWR in 2016 and 2017. In addition, the point-scale measurement and CRNS data were used in the second area to determine the soil hydraulic properties, and to estimate the GWR in the 2017-2018 and 2018-2019 hydrological years. The resulting values of GWR on large- and intermediary-scale were then compared and validated by the estimates obtained by groundwater table fluctuations. The GWR rates for IMERG- and rain-gauge-based scenarios showed similar coefficients between 68\% and 89\%, similar mean errors between 30\% and 34\%, and slightly-different bias between -13\% and 11\%. The results of GWR rates for soil probes and CRNS soil moisture scenarios ranged from -5.87 to -61.81 cm yr-1, which corresponds to 5\% and 38\% of the precipitation. The calculations of the mean GWR rates on large-scale, based on remote sensing data, and on intermediary-scale, based on CRNS data, held similar results for the Podzol soil type, namely 17.87\% and 17\% of the precipitation. It is then concluded that the proposed methodologies allowed for estimating realistically the GWR over the study areas, which can be a ground-breaking step towards improving the water management and decision-making in the Northeast of Brazil.}, language = {en} } @article{BaritelloKhajooeiEngeletal.2020, author = {Baritello, Omar and Khajooei, Mina and Engel, Tilman and Kopinski, Stephan and Quarmby, Andrew James and M{\"u}ller, Steffen and Mayer, Frank}, title = {Neuromuscular shoulder activity during exercises with different combinations of stable and unstable weight mass}, series = {BMC sports science, medicine and rehabilitation}, volume = {12}, journal = {BMC sports science, medicine and rehabilitation}, number = {1}, publisher = {BioMed Central}, address = {London}, issn = {2052-1847}, doi = {10.1186/s13102-020-00168-x}, pages = {14}, year = {2020}, abstract = {Background Recent shoulder injury prevention programs have utilized resistance exercises combined with different forms of instability, with the goal of eliciting functional adaptations and thereby reducing the risk of injury. However, it is still unknown how an unstable weight mass (UWM) affects the muscular activity of the shoulder stabilizers. Aim of the study was to assess neuromuscular activity of dynamic shoulder stabilizers under four conditions of stable and UWM during three shoulder exercises. It was hypothesized that a combined condition of weight with UWM would elicit greater activation due to the increased stabilization demand. Methods Sixteen participants (7 m/9 f) were included in this cross-sectional study and prepared with an EMG-setup for the: Mm. upper/lower trapezius (U.TA/L.TA), lateral deltoid (DE), latissimus dorsi (LD), serratus anterior (SA) and pectoralis major (PE). A maximal voluntary isometric contraction test (MVIC; 5 s.) was performed on an isokinetic dynamometer. Next, internal/external rotation (In/Ex), abduction/adduction (Ab/Ad) and diagonal flexion/extension (F/E) exercises (5 reps.) were performed with four custom-made-pipes representing different exercise conditions. First, the empty-pipe (P; 0.5 kg) and then, randomly ordered, water-filled-pipe (PW; 1 kg), weight-pipe (PG; 4.5 kg) and weight + water-filled-pipe (PWG; 4.5 kg), while EMG was recorded. Raw root-mean-square values (RMS) were normalized to MVIC (\%MVIC). Differences between conditions for RMS\%MVIC, scapular stabilizer (SR: U.TA/L.TA; U.TA/SA) and contraction (CR: concentric/eccentric) ratios were analyzed (paired t-test; p <= 0.05; Bonferroni adjusted alpha = 0.008). Results PWG showed significantly greater muscle activity for all exercises and all muscles except for PE compared to P and PW. Condition PG elicited muscular activity comparable to PWG (p > 0.008) with significantly lower activation of L.TA and SA in the In/Ex rotation. The SR ratio was significantly higher in PWG compared to P and PW. No significant differences were found for the CR ratio in all exercises and for all muscles. Conclusion Higher weight generated greater muscle activation whereas an UWM raised the neuromuscular activity, increasing the stabilization demands. Especially in the In/Ex rotation, an UWM increased the RMS\%MVIC and SR ratio. This might improve training effects in shoulder prevention and rehabilitation programs.}, language = {en} } @misc{BaritelloKhajooeiEngeletal.2020, author = {Baritello, Omar and Khajooei, Mina and Engel, Tilman and Kopinski, Stephan and Quarmby, Andrew and M{\"u}ller, Steffen and Mayer, Frank}, title = {Neuromuscular shoulder activity during exercises with different combinations of stable and unstable weight mass}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {1}, issn = {1866-8364}, doi = {10.25932/publishup-50936}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-509366}, pages = {16}, year = {2020}, abstract = {Background Recent shoulder injury prevention programs have utilized resistance exercises combined with different forms of instability, with the goal of eliciting functional adaptations and thereby reducing the risk of injury. However, it is still unknown how an unstable weight mass (UWM) affects the muscular activity of the shoulder stabilizers. Aim of the study was to assess neuromuscular activity of dynamic shoulder stabilizers under four conditions of stable and UWM during three shoulder exercises. It was hypothesized that a combined condition of weight with UWM would elicit greater activation due to the increased stabilization demand. Methods Sixteen participants (7 m/9 f) were included in this cross-sectional study and prepared with an EMG-setup for the: Mm. upper/lower trapezius (U.TA/L.TA), lateral deltoid (DE), latissimus dorsi (LD), serratus anterior (SA) and pectoralis major (PE). A maximal voluntary isometric contraction test (MVIC; 5 s.) was performed on an isokinetic dynamometer. Next, internal/external rotation (In/Ex), abduction/adduction (Ab/Ad) and diagonal flexion/extension (F/E) exercises (5 reps.) were performed with four custom-made-pipes representing different exercise conditions. First, the empty-pipe (P; 0.5 kg) and then, randomly ordered, water-filled-pipe (PW; 1 kg), weight-pipe (PG; 4.5 kg) and weight + water-filled-pipe (PWG; 4.5 kg), while EMG was recorded. Raw root-mean-square values (RMS) were normalized to MVIC (\%MVIC). Differences between conditions for RMS\%MVIC, scapular stabilizer (SR: U.TA/L.TA; U.TA/SA) and contraction (CR: concentric/eccentric) ratios were analyzed (paired t-test; p <= 0.05; Bonferroni adjusted alpha = 0.008). Results PWG showed significantly greater muscle activity for all exercises and all muscles except for PE compared to P and PW. Condition PG elicited muscular activity comparable to PWG (p > 0.008) with significantly lower activation of L.TA and SA in the In/Ex rotation. The SR ratio was significantly higher in PWG compared to P and PW. No significant differences were found for the CR ratio in all exercises and for all muscles. Conclusion Higher weight generated greater muscle activation whereas an UWM raised the neuromuscular activity, increasing the stabilization demands. Especially in the In/Ex rotation, an UWM increased the RMS\%MVIC and SR ratio. This might improve training effects in shoulder prevention and rehabilitation programs.}, language = {en} } @article{BarkowOswaldLensingetal.2020, author = {Barkow, Isolde S. and Oswald, Sascha and Lensing, Hermann Josef and Munz, Matthias}, title = {Seasonal dynamics modifies fate of oxygen, nitrate, and organic micropollutants during bank filtration}, series = {Environmental science and pollution research : official organ of the EuCheMS Division for Chemistry and the Environment, EuCheMS DCE}, volume = {28}, journal = {Environmental science and pollution research : official organ of the EuCheMS Division for Chemistry and the Environment, EuCheMS DCE}, number = {8}, publisher = {Springer}, address = {Heidelberg}, issn = {0944-1344}, doi = {10.1007/s11356-020-11002-9}, pages = {9682 -- 9700}, year = {2020}, abstract = {Bank filtration is considered to improve water quality through microbially mediated degradation of pollutants and is suitable for waterworks to increase their production. In particular, aquifer temperatures and oxygen supply have a great impact on many microbial processes. To investigate the temporal and spatial behavior of selected organic micropollutants during bank filtration in dependence of relevant biogeochemical conditions, we have set up a 2D reactive transport model using MODFLOW and PHT3D under the user interface ORTI3D. The considered 160-m-long transect ranges from the surface water to a groundwater extraction well of the adjacent waterworks. For this purpose, water levels, temperatures, and chemical parameters were regularly measured in the surface water and groundwater observation wells over one and a half years. To simulate the effect of seasonal temperature variations on microbial mediated degradation, we applied an empirical temperature factor, which yields a strong reduction of the degradation rate at groundwater temperatures below 11 degrees C. Except for acesulfame, the considered organic micropollutants are substantially degraded along their subsurface flow paths with maximum degradation rates in the range of 10(-6) mol L-1 s(-1). Preferential biodegradation of phenazone, diclofenac, and valsartan was found under oxic conditions, whereas carbamazepine and sulfamethoxazole were degraded under anoxic conditions. This study highlights the influence of seasonal variations in oxygen supply and temperature on the fate of organic micropollutants in surface water infiltrating into an aquifer.}, language = {en} } @article{BarkowskyGiese2020, author = {Barkowsky, Matthias and Giese, Holger}, title = {Hybrid search plan generation for generalized graph pattern matching}, series = {Journal of logical and algebraic methods in programming}, volume = {114}, journal = {Journal of logical and algebraic methods in programming}, publisher = {Elsevier}, address = {New York}, issn = {2352-2208}, doi = {10.1016/j.jlamp.2020.100563}, pages = {29}, year = {2020}, abstract = {In recent years, the increased interest in application areas such as social networks has resulted in a rising popularity of graph-based approaches for storing and processing large amounts of interconnected data. To extract useful information from the growing network structures, efficient querying techniques are required. In this paper, we propose an approach for graph pattern matching that allows a uniform handling of arbitrary constraints over the query vertices. Our technique builds on a previously introduced matching algorithm, which takes concrete host graph information into account to dynamically adapt the employed search plan during query execution. The dynamic algorithm is combined with an existing static approach for search plan generation, resulting in a hybrid technique which we further extend by a more sophisticated handling of filtering effects caused by constraint checks. We evaluate the presented concepts empirically based on an implementation for our graph pattern matching tool, the Story Diagram Interpreter, with queries and data provided by the LDBC Social Network Benchmark. Our results suggest that the hybrid technique may improve search efficiency in several cases, and rarely reduces efficiency.}, language = {en} } @misc{BarlowHartmannGonzalezetal.2020, author = {Barlow, Axel and Hartmann, Stefanie and Gonzalez, Javier and Hofreiter, Michael and Paijmans, Johanna L. A.}, title = {Consensify}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1033}, issn = {1866-8372}, doi = {10.25932/publishup-47252}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472521}, pages = {24}, year = {2020}, abstract = {A standard practise in palaeogenome analysis is the conversion of mapped short read data into pseudohaploid sequences, frequently by selecting a single high-quality nucleotide at random from the stack of mapped reads. This controls for biases due to differential sequencing coverage, but it does not control for differential rates and types of sequencing error, which are frequently large and variable in datasets obtained from ancient samples. These errors have the potential to distort phylogenetic and population clustering analyses, and to mislead tests of admixture using D statistics. We introduce Consensify, a method for generating pseudohaploid sequences, which controls for biases resulting from differential sequencing coverage while greatly reducing error rates. The error correction is derived directly from the data itself, without the requirement for additional genomic resources or simplifying assumptions such as contemporaneous sampling. For phylogenetic and population clustering analysis, we find that Consensify is less affected by artefacts than methods based on single read sampling. For D statistics, Consensify is more resistant to false positives and appears to be less affected by biases resulting from different laboratory protocols than other frequently used methods. Although Consensify is developed with palaeogenomic data in mind, it is applicable for any low to medium coverage short read datasets. We predict that Consensify will be a useful tool for future studies of palaeogenomes.}, language = {en} } @article{BarlowHartmannGonzalezetal.2020, author = {Barlow, Axel and Hartmann, Stefanie and Gonzalez, Javier and Hofreiter, Michael and Paijmans, Johanna L. A.}, title = {Consensify}, series = {Genes / Molecular Diversity Preservation International}, volume = {11}, journal = {Genes / Molecular Diversity Preservation International}, number = {1}, publisher = {MDPI}, address = {Basel}, issn = {2073-4425}, doi = {10.3390/genes11010050}, pages = {22}, year = {2020}, abstract = {A standard practise in palaeogenome analysis is the conversion of mapped short read data into pseudohaploid sequences, frequently by selecting a single high-quality nucleotide at random from the stack of mapped reads. This controls for biases due to differential sequencing coverage, but it does not control for differential rates and types of sequencing error, which are frequently large and variable in datasets obtained from ancient samples. These errors have the potential to distort phylogenetic and population clustering analyses, and to mislead tests of admixture using D statistics. We introduce Consensify, a method for generating pseudohaploid sequences, which controls for biases resulting from differential sequencing coverage while greatly reducing error rates. The error correction is derived directly from the data itself, without the requirement for additional genomic resources or simplifying assumptions such as contemporaneous sampling. For phylogenetic and population clustering analysis, we find that Consensify is less affected by artefacts than methods based on single read sampling. For D statistics, Consensify is more resistant to false positives and appears to be less affected by biases resulting from different laboratory protocols than other frequently used methods. Although Consensify is developed with palaeogenomic data in mind, it is applicable for any low to medium coverage short read datasets. We predict that Consensify will be a useful tool for future studies of palaeogenomes.}, language = {en} } @article{BarnettWestburySandovalVelascoetal.2020, author = {Barnett, Ross and Westbury, Michael V. and Sandoval-Velasco, Marcela and Vieira, Filipe Garrett and Jeon, Sungwon and Zazula, Grant and Martin, Michael D. and Ho, Simon Y. W. and Mather, Niklas and Gopalakrishnan, Shyam and Ramos-Madrigal, Jazmin and de Manuel, Marc and Zepeda-Mendoza, M. Lisandra and Antunes, Agostinho and Baez, Aldo Carmona and De Cahsan, Binia and Larson, Greger and O'Brien, Stephen J. and Eizirik, Eduardo and Johnson, Warren E. and Koepfli, Klaus-Peter and Wilting, Andreas and Fickel, J{\"o}rns and Dalen, Love and Lorenzen, Eline D. and Marques-Bonet, Tomas and Hansen, Anders J. and Zhang, Guojie and Bhak, Jong and Yamaguchi, Nobuyuki and Gilbert, M. Thomas P.}, title = {Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat}, series = {Current biology}, volume = {30}, journal = {Current biology}, number = {24}, publisher = {Cell Press}, address = {Cambridge}, issn = {0960-9822}, doi = {10.1016/j.cub.2020.09.051}, pages = {14}, year = {2020}, abstract = {Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. Previous mitochondrial DNA phylogenies suggested that it was a highly divergent sister lineage to all extant cat species [6-8]. However, mitochondrial phylogenies can be misled by hybridization [9], incomplete lineage sorting (ILS), or sex-biased dispersal patterns [10], which might be especially relevant for Homotherium since widespread mito-nuclear discrepancies have been uncovered in modern cats [10]. To examine the evolutionary history of Homotherium, we generated a -7x nuclear genome and a similar to 38x exome from H. latidens using shotgun and target-capture sequencing approaches. Phylogenetic analyses reveal Homotherium as highly divergent (similar to 22.5 Ma) from living cat species, with no detectable signs of gene flow. Comparative genomic analyses found signatures of positive selection in several genes, including those involved in vision, cognitive function, and energy consumption, putatively consistent with diurnal activity, well-developed social behavior, and cursorial hunting [5]. Finally, we uncover relatively high levels of genetic diversity, suggesting that Homotherium may have been more abundant than the limited fossil record suggests [3, 4, 11-14]. Our findings complement and extend previous inferences from both the fossil record and initial molecular studies, enhancing our understanding of the evolution and ecology of this remarkable lineage.}, language = {en} } @article{BaroniFrancke2020, author = {Baroni, Gabriele and Francke, Till}, title = {An effective strategy for combining variance- and distribution-based global sensitivity analysis}, series = {Environmental modelling \& software with environment data news}, volume = {134}, journal = {Environmental modelling \& software with environment data news}, publisher = {Elsevier}, address = {Oxford}, issn = {1364-8152}, doi = {10.1016/j.envsoft.2020.104851}, pages = {14}, year = {2020}, abstract = {We present a new strategy for performing global sensitivity analysis capable to estimate main and interaction effects from a generic sampling design. The new strategy is based on a meaningful combination of varianceand distribution-based approaches. The strategy is tested on four analytic functions and on a hydrological model. Results show that the analysis is consistent with the state-of-the-art Saltelli/Jansen formula but to better quantify the interaction effect between the input factors when the output distribution is skewed. Moreover, the estimation of the sensitivity indices is much more robust requiring a smaller number of simulations runs. Specific settings and alternative methods that can be integrated in the new strategy are also discussed. Overall, the strategy is considered as a new simple and effective tool for performing global sensitivity analysis that can be easily integrated in any environmental modelling framework.}, language = {en} } @phdthesis{Barrionuevo2020, author = {Barrionuevo, Mat{\´i}as}, title = {The role of the upper plate in the Andean tectonic evolution (33-36°S): insights from structural geology and numerical modeling}, doi = {10.25932/publishup-51590}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-515909}, school = {Universit{\"a}t Potsdam}, pages = {148, S2}, year = {2020}, abstract = {Los Andes Centrales del Sur (33-36°S) son un gran laboratorio para el estudio de los procesos de deformaci{\´o}n orog{\´e}nica, donde las condiciones de borde, como la geometr{\´i}a de la placa subductada, imponen un importante control sobre la deformaci{\´o}n andina. Por otro lado, la Placa Sudamericana presenta una serie de heterogeneidades que tambi{\´e}n imparten un control sobre el modo de deformaci{\´o}n. El objetivo de esta tesis es probar el control de este {\´u}ltimo factor sobre la construcci{\´o}n del sistema orog{\´e}nico andino. A partir de la integraci{\´o}n de la informaci{\´o}n superficial y de subsuelo en el {\´a}rea sur (34°-36°S), se estudi{\´o} la evoluci{\´o}n de la deformaci{\´o}n andina sobre el segmento de subducci{\´o}n normal. Se desarroll{\´o} un modelo estructural que eval{\´u}a el estado de esfuerzos desde el Mioceno hasta la actualidad, el rol de estructuras previas y su influencia en la migraci{\´o}n de fluidos. Con estos datos y publicaciones previas de la zona norte del {\´a}rea de estudio (33°-34ºS), se realiz{\´o} un modelado num{\´e}rico geodin{\´a}mico para probar la hip{\´o}tesis del papel de las heterogeneidades de la placa superior en la evoluci{\´o}n andina. Se utilizaron dos c{\´o}digos (LAPEX-2D y ASPECT) basados en elementos finitos/diferencias finitas, que simulan el comportamiento de materiales con reolog{\´i}as elastoviscopl{\´a}sticas bajo deformaci{\´o}n. Los resultados del modelado sugieren que la deformaci{\´o}n contraccional de la placa superior est{\´a} significativamente controlada por la resistencia de la lit{\´o}sfera, que est{\´a} definida por la composici{\´o}n de la corteza superior e inferior y por la proporci{\´o}n del manto litosf{\´e}rico, que a su vez est{\´a} definida por eventos tect{\´o}nicos previos. Estos eventos previos tambi{\´e}n definieron la composici{\´o}n de la corteza y su geometr{\´i}a, que es otro factor que controla la localizaci{\´o}n de la deformaci{\´o}n. Con una composici{\´o}n de corteza inferior m{\´a}s f{\´e}lsica, la deformaci{\´o}n sigue un modo de cizalla pura mientras que las composiciones m{\´a}s m{\´a}ficas provocan un modo de deformaci{\´o}n tipo cizalla simple. Por otro lado, observamos que el espesor inicial de la lit{\´o}sfera controla la localizaci{\´o}n de la deformaci{\´o}n, donde zonas con lit{\´o}sfera m{\´a}s fina es propensa a concentrar la deformaci{\´o}n. Un l{\´i}mite lit{\´o}sfera-asten{\´o}sfera asim{\´e}trico, como resultado del flujo de la cu{\~n}a mant{\´e}lica tiende a generar despegues vergentes al E.}, language = {en} } @article{BarthelBuerkner2020, author = {Barthel, Martin and B{\"u}rkner, Hans-Joachim}, title = {Ukraine and the big moral divide}, series = {Geopolitics}, volume = {25}, journal = {Geopolitics}, number = {3}, publisher = {Routledge, Taylor \& Francis Group}, address = {Philadelphia, Pa. [u.a]}, issn = {1465-0045}, doi = {10.1080/14650045.2018.1561437}, pages = {633 -- 657}, year = {2020}, abstract = {Geopolitical shifts and the changing significance of borders in the EU's neighbourhood are usually understood as a matter of international power politics. Factors that accompany geopolitical impact on borders, such as media coverage of geopolitical change, often appear as secondary or irrelevant. However the recent Ukraine conflict revealed the contrary as pro-EU attitudes were strongly supported by 'western' media. Therefore this paper seeks to clarify the role of news media in creating perspectives and attitudes on geopolitical shifts and the significance of European borders. Empirical evidence on the coverage of the evolving Ukraine crisis by German news sources portrays the media as promoters of biased framings and imaginaries which suggest that the EU be a potential conflict party in the newly evolving geostrategic confrontation in its eastern neighbourhood. The findings indicate that during critical periods of the Ukraine crisis media reports combined rising euphoria about Europe and 'the West', as defenders of the 'good cause', with excessive moral polarising and the discursive normalisation of a rhetoric of escalation. Imaginaries of a bipolar world (The West against Russia) and a new Cold War prepared the ground for a new understanding of European borders and neighbourhood relations as being manipulable at will.}, language = {en} } @article{BastianNacakRoddatisetal.2020, author = {Bastian, Philipp U. and Nacak, Selma and Roddatis, Vladimir and Kumke, Michael Uwe}, title = {Tracking the motion of lanthanide ions within core-shell-shell NaYF4 nanocrystals via resonance energy transfer}, series = {The journal of physical chemistry : C}, volume = {124}, journal = {The journal of physical chemistry : C}, number = {20}, publisher = {American Chemical Society}, address = {Washington, DC}, issn = {1932-7447}, doi = {10.1021/acs.jpcc.0c02588}, pages = {11229 -- 11238}, year = {2020}, abstract = {Lanthanide resonance energy transfer (LRET) was used to investigate the motion of dopant ions during the synthesis of core-shell-shell-nanocrystals (NCs) that are frequently used as frequency upconversion materials. Reaction conditions (temperature, solvent) as well as lattice composition and precursors were adapted from a typical hydrothermal synthesis approach used to obtain upconversion nanoparticles (UCNPs). Instead of adding the lanthanide ions Yb3+/Er3+ as the sensitizer/activator couple, Eu3+/Nd3+ as the donor/acceptor were added as the LRET pair to the outer shell (Eu-3) and the core (Nd-3). By tailoring the thickness of the insulation shell ("middle shell"), the expected distance between the donor and the acceptor was increased beyond 2 R-0, a distance for which no LRET is expected. The successful synthesis of core- shell-shell NCs with different thicknesses of the insulation layer was demonstrated by high-resolution transmission electron microscopy measurement. The incorporation of the Eu3+ ions into the NaYF4 lattice was investigated by high-resolution time-resolved luminescence measurements. Two major Eu3+ species (bulk and surface) were found. This was supported by steady-state as well as time-resolved luminescence data. Based on the luminescence decay kinetics, the intermixing of lanthanides during synthesis of core- shell UCNPs was evaluated. The energy transfer between Eu3+ (donor) and Nd3+ (acceptor) ions was exploited to quantify the motion of the dopant ions. This investigation reveals the migration of Ln(3+) ions between different compatiments in core-shell NCs and affects the concept of using core-shell architectures to increase the efficiency of UCNPs. In order to obtain well-separated core and shell structures with different dopants, alternative concepts are needed.}, language = {en} } @article{BastianYudeGuerenuKurganovaetal.2020, author = {Bastian, Philipp U. and Yu, Leixiao and de Guere{\~n}u Kurganova, Anna Lopez and Haag, Rainer and Kumke, Michael Uwe}, title = {Bioinspired confinement of upconversion nanoparticles for improved performance in aqueous solution}, series = {The journal of physical chemistry : C, Nanomaterials and interfaces}, volume = {124}, journal = {The journal of physical chemistry : C, Nanomaterials and interfaces}, number = {52}, publisher = {American Chemical Society}, address = {Washington, DC}, issn = {1932-7447}, doi = {10.1021/acs.jpcc.0c09798}, pages = {28623 -- 28635}, year = {2020}, abstract = {The resonance energy transfer (RET) from NaYF4:Yb,Er upconverting nanoparticles (UNCPs) to a dye (5-carboxytetramethylrhodamine (TAMRA)) was investigated by photoluminescence experiments and microscale thermophoresis (MST). The dye was excited via RET from the UCNPs which was excited in the near-infrared (NIR). The change of the dye diffusion speed (free vs coupled) was investigated by MST. RET shows significant changes in the decay times of the dye as well as of the UCNPs. MST reveals significant changes in the diffusion speed. A unique amphiphilic coating polymer (customized mussel protein (CMP) polymer) for UCNP surface coating was used, which mimics blood protein adsorption and mussel food protein adhesion to transfer the UCNP into the aqueous phase and to allow surface functionalization. The CMP provides very good water dispersibility to the UCNPs and minimizes ligand exchange and subsequent UCNP aging reactions because of the interlinkage of the CMP on the UCNP surface. Moreover, CMP provides N-3-functional groups for dick chemistry-based functionalization demonstrated with the dye 5-carboxytetramethylrhodamine (TAMRA). This establishes the principle coupling scheme for suitable biomarkers such as antibodies. The CMP provides very stable aqueous UCNP dispersions that are storable up to 3 years in a fridge at 5 degrees C without dissolution or coagulation. The outstanding properties of CMP in shielding the UCNP from unwanted solvent effects is reflected in the distinct increase of the photoluminescence decay times after UCNP functionalization. The UCNP-to-TAMRA energy transfer is also spectroscopically investigated at low temperatures (4-200 K), revealing that one of the two green Er(III) emission bands contributes the major part to the energy transfer. The TAMRA fluorescence decay time increases by a factor of 9500 from 2.28 ns up to 22 mu s due to radiationless energy transfer from the UCNP after NIR excitation of the latter. This underlines the unique properties of CMP as a versatile capping ligand for distinctly improving the UCNPs' performance in aqueous solutions, for coupling of biomolecules, and for applications for in vitro and in vivo experiments using UCNPs as optical probes in life science applications.}, language = {en} } @inproceedings{BaumKoesterKrasnovaetal.2020, author = {Baum, Katharina and K{\"o}ster, Antonia and Krasnova, Hanna and Tarafdar, Monideepa}, title = {Living in a world of plenty?}, series = {Proceedings of the 28th European Conference on Information Systems (ECIS) : ECIS 2020 Research Papers}, booktitle = {Proceedings of the 28th European Conference on Information Systems (ECIS) : ECIS 2020 Research Papers}, publisher = {AIS Electronic Library (AISeL)}, address = {[Erscheinungsort nicht ermittelbar]}, year = {2020}, abstract = {Inequality in the distribution of economic wealth within populations has been rising steadily over the past century, having reached unprecedented highs in many Western societies. However, this development is not reflected in people's perceptions of wealth inequality, as the public tends to underestimate it. Research suggests that inequality estimates are derived from personal reference groups, which, as we propose, are expanded by social network site (SNS) use. As content on SNSs frequently revolves around events of consumption, signaling enhanced overall population wealth, this study tests the hypothesis that SNS use distorts inequality perceptions downward, i.e., increases the perception of societal equality. Responses of 534 survey participants in the United States confirm that SNS use negatively predicts perceived inequality. The relationship is stronger the more SNS users perceive the content they encounter online as real, supporting the assumption that observing other people's behavior online lowers estimates of nationwide wealth inequality. These findings provide novel insights on inequality misperceptions by suggesting individuals' SNS use as a new predictor of perceived wealth inequality.}, language = {en} } @article{BaxaWeintraubSeckler2020, author = {Baxa, Ulrich and Weintraub, Andrej and Seckler, Robert}, title = {Self-competitive inhibition of the bacteriophage P22 Tailspike endorhamnosidase by O-antigen oligosaccharides}, series = {Biochemistry}, volume = {59}, journal = {Biochemistry}, number = {51}, publisher = {American Chemical Society}, address = {Washington}, issn = {0006-2960}, doi = {10.1021/acs.biochem.0c00872}, pages = {4845 -- 4855}, year = {2020}, abstract = {The P22 tailspike endorhamnosidase confers the high specificity of bacteriophage P22 for some serogroups of Salmonella differing only slightly in their O-antigen polysaccharide. We used several biophysical methods to study the binding and hydrolysis of O-antigen fragments of different lengths by P22 tailspike protein. O-Antigen saccharides of defined length labeled with fluorophors could be purified with higher resolution than previously possible. Small amounts of naturally occurring variations of 0antigen fragments missing the nonreducing terminal galactose could be used to determine the contribution of this part to the free energy of binding to be similar to 7 kJ/mol. We were able to show via several independent lines of evidence that an unproductive binding mode is highly favored in binding over all other possible binding modes leading to hydrolysis. This is true even under circumstances under which the O-antigen fragment is long enough to be cleaved efficiently by the enzyme. The high-affinity unproductive binding mode results in a strong self-competitive inhibition in addition to product inhibition observed for this system. Self-competitive inhibition is observed for all substrates that have a free reducing end rhamnose. Naturally occurring O-antigen, while still attached to the bacterial outer membrane, does not have a free reducing end and therefore does not perform self-competitive inhibition.}, language = {en} } @article{BeckusBellissardDeNittis2020, author = {Beckus, Siegfried and Bellissard, Jean and De Nittis, Giuseppe}, title = {Spectral continuity for aperiodic quantum systems}, series = {Journal of mathematical physics}, volume = {61}, journal = {Journal of mathematical physics}, number = {12}, publisher = {American Institute of Physics}, address = {Melville, NY}, issn = {0022-2488}, doi = {10.1063/5.0011488}, pages = {19}, year = {2020}, abstract = {This work provides a necessary and sufficient condition for a symbolic dynamical system to admit a sequence of periodic approximations in the Hausdorff topology. The key result proved and applied here uses graphs that are called De Bruijn graphs, Rauzy graphs, or Anderson-Putnam complex, depending on the community. Combining this with a previous result, the present work justifies rigorously the accuracy and reliability of algorithmic methods used to compute numerically the spectra of a large class of self-adjoint operators. The so-called Hamiltonians describe the effective dynamic of a quantum particle in aperiodic media. No restrictions on the structure of these operators other than general regularity assumptions are imposed. In particular, nearest-neighbor correlation is not necessary. Examples for the Fibonacci and the Golay-Rudin-Shapiro sequences are explicitly provided illustrating this discussion. While the first sequence has been thoroughly studied by physicists and mathematicians alike, a shroud of mystery still surrounds the latter when it comes to spectral properties. In light of this, the present paper gives a new result here that might help uncovering a solution.}, language = {en} } @article{BeckusPinchover2020, author = {Beckus, Siegfried and Pinchover, Yehuda}, title = {Shnol-type theorem for the Agmon ground state}, series = {Journal of spectral theory}, volume = {10}, journal = {Journal of spectral theory}, number = {2}, publisher = {EMS Publishing House}, address = {Z{\"u}rich}, issn = {1664-039X}, doi = {10.4171/JST/296}, pages = {355 -- 377}, year = {2020}, abstract = {LetH be a Schrodinger operator defined on a noncompact Riemannianmanifold Omega, and let W is an element of L-infinity (Omega; R). Suppose that the operator H + W is critical in Omega, and let phi be the corresponding Agmon ground state. We prove that if u is a generalized eigenfunction ofH satisfying vertical bar u vertical bar <= C-phi in Omega for some constant C > 0, then the corresponding eigenvalue is in the spectrum of H. The conclusion also holds true if for some K is an element of Omega the operator H admits a positive solution in (Omega) over bar = Omega \ K, and vertical bar u vertical bar <= C psi in (Omega) over bar for some constant C > 0, where psi is a positive solution of minimal growth in a neighborhood of infinity in Omega. Under natural assumptions, this result holds also in the context of infinite graphs, and Dirichlet forms.}, language = {en} } @article{BehlRazzaqMazurekBudzynskaetal.2020, author = {Behl, Marc and Razzaq, Muhammad Yasar and Mazurek-Budzynska, Magdalena and Lendlein, Andreas}, title = {Polyetheresterurethane based porous scaffolds with tailorable architectures by supercritical CO2 foaming}, series = {MRS advances}, volume = {5}, journal = {MRS advances}, number = {45}, publisher = {Cambridge University Press}, address = {New York, NY}, issn = {2059-8521}, doi = {10.1557/adv.2020.345}, pages = {2317 -- 2330}, year = {2020}, abstract = {Porous three-dimensional (3D) scaffolds are promising treatment options in regenerative medicine. Supercritical and dense-phase fluid technologies provide an attractive alternative to solvent-based scaffold fabrication methods. In this work, we report on the fabrication of poly-etheresterurethane (PPDO-PCL) based porous scaffolds with tailorable pore size, porosity, and pore interconnectivity by using supercritical CO2(scCO(2)) fluid-foaming. The influence of the processing parameters such as soaking time, soaking temperature and depressurization on porosity, pore size, and interconnectivity of the foams were investigated. The average pore diameter could be varied between 100-800 mu m along with a porosity in the range from (19 +/- 3 to 61 +/- 6)\% and interconnectivity of up to 82\%. To demonstrate their applicability as scaffold materials, selected foams were sterilized via ethylene oxide sterilization. They showed negligible cytotoxicity in tests according to DIN EN ISO 10993-5 and 10993-12 using L929 cells. The study demonstrated that the pore size, porosity and the interconnectivity of this multi-phase semicrystalline polymer could be tailored by careful control of the processing parameters during the scCO(2)foaming process. In this way, PPDO-PCL scaffolds with high porosity and interconnectivity are potential candidate materials for regenerative treatment options.}, language = {en} } @article{BehlZhaoLendlein2020, author = {Behl, Marc and Zhao, Qian and Lendlein, Andreas}, title = {Glucose-responsive shape-memory cryogels}, series = {Journal of materials research : JMR}, volume = {35}, journal = {Journal of materials research : JMR}, number = {18}, publisher = {Springer}, address = {Berlin}, issn = {0884-2914}, doi = {10.1557/jmr.2020.204}, pages = {2396 -- 2404}, year = {2020}, abstract = {Boronic ester bonds can be reversibly formed between phenylboronic acid (PBA) and triol moieties. Here, we aim at a glucose-induced shape-memory effect by implementing such bonds as temporary netpoints, which are cleavable by glucose and by minimizing the volume change upon stimulation by a porous cryogel structure. The polymer system consisted of a semi-interpenetrating network (semi-IPN) architecture, in which the triol moieties were part of the permanent network and the PBA moieties were located in the linear polymer diffused into the semi-IPN. In an alkaline medium (pH = 10), the swelling ratio was approximately 35, independent of C-glu varied between 0 and 300 mg/dL. In bending experiments, shape fixity R-f approximate to 80\% and shape recovery R-r approximate to 100\% from five programming/recovery cycles could be determined. R-r was a function of C-glu in the range from 0 to 300 mg/dL, which accords with the fluctuation range of C-glu in human blood. In this way, the shape-memory hydrogels could play a role in future diabetes treatment options.}, language = {en} }