@article{MayGiladiRistowetal.2013, author = {May, Felix and Giladi, Itamar and Ristow, Michael and Ziv, Yaron and Jeltsch, Florian}, title = {Plant functional traits and community assembly along interacting gradients of productivity and fragmentation}, series = {Perspectives in plant ecology, evolution and systematics}, volume = {15}, journal = {Perspectives in plant ecology, evolution and systematics}, number = {6}, publisher = {Elsevier}, address = {Jena}, issn = {1433-8319}, doi = {10.1016/j.ppees.2013.08.002}, pages = {304 -- 318}, year = {2013}, abstract = {Quantifying the association of plant functional traits to environmental gradients is a promising approach for understanding and projecting community responses to land use and climatic changes. Although habitat fragmentation and climate are expected to affect plant communities interactively, there is a lack of empirical studies addressing trait associations to fragmentation in different climatic regimes. In this study, we analyse data on the key functional traits: specific leaf area (SLA), plant height, seed mass and seed number. First, we assess the evidence for the community assembly mechanisms habitat filtering and competition at different spatial scales, using several null-models and a comprehensive set of community-level trait convergence and divergence indices. Second, we analyse the association of community-mean traits with patch area and connectivity along a south-north productivity gradient. We found clear evidence for trait convergence due to habitat filtering. In contrast, the evidence for trait divergence due to competition fundamentally depended on the null-model used. When the null-model controlled for habitat filtering, there was only evidence for trait divergence at the smallest sampling scale (0.25 m x 0.25 m). All traits varied significantly along the S-N productivity gradient. While plant height and SLA were consistently associated with fragmentation, the association of seed mass and seed number with fragmentation changed along the S-N gradient. Our findings indicate trait convergence due to drought stress in the arid sites and due to higher productivity in the mesic sites. The association of plant traits to fragmentation is likely driven by increased colonization ability in small and/or isolated patches (plant height, seed number) or increased persistence ability in isolated patches (seed mass). Our study provides the first empirical test of trait associations with fragmentation along a productivity gradient. We conclude that it is crucial to study the interactive effects of different ecological drivers on plant functional traits.}, language = {en} } @article{MenonLevermannScheweetal.2013, author = {Menon, Arathy and Levermann, Anders and Schewe, Jacob and Lehmann, J. and Frieler, Katja}, title = {Consistent increase in Indian monsoon rainfall and its variability across CMIP-5 models}, series = {Earth system dynamics}, volume = {4}, journal = {Earth system dynamics}, number = {2}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {2190-4979}, doi = {10.5194/esd-4-287-2013}, pages = {287 -- 300}, year = {2013}, abstract = {The possibility of an impact of global warming on the Indian monsoon is of critical importance for the large population of this region. Future projections within the Coupled Model Intercomparison Project Phase 3 (CMIP-3) showed a wide range of trends with varying magnitude and sign across models. Here the Indian summer monsoon rainfall is evaluated in 20 CMIP-5 models for the period 1850 to 2100. In the new generation of climate models, a consistent increase in seasonal mean rainfall during the summer monsoon periods arises. All models simulate stronger seasonal mean rainfall in the future compared to the historic period under the strongest warming scenario RCP-8.5. Increase in seasonal mean rainfall is the largest for the RCP-8.5 scenario compared to other RCPs. Most of the models show a northward shift in monsoon circulation by the end of the 21st century compared to the historic period under the RCP-8.5 scenario. The interannual variability of the Indian monsoon rainfall also shows a consistent positive trend under unabated global warming. Since both the long-term increase in monsoon rainfall as well as the increase in interannual variability in the future is robust across a wide range of models, some confidence can be attributed to these projected trends.}, language = {en} } @article{VanBelProostVanNesteetal.2013, author = {Van Bel, Michiel and Proost, Sebastian and Van Neste, Christophe and Deforce, Dieter and Van de Peer, Yves and Vandepoele, Klaas}, title = {TRAPID - an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes}, series = {Genome biology : biology for the post-genomic era}, volume = {14}, journal = {Genome biology : biology for the post-genomic era}, number = {12}, publisher = {BioMed Central}, address = {London}, issn = {1465-6906}, doi = {10.1186/gb-2013-14-12-r134}, pages = {10}, year = {2013}, abstract = {Transcriptome analysis through next-generation sequencing technologies allows the generation of detailed gene catalogs for non-model species, at the cost of new challenges with regards to computational requirements and bioinformatics expertise. Here, we present TRAPID, an online tool for the fast and efficient processing of assembled RNA-Seq transcriptome data, developed to mitigate these challenges. TRAPID offers high-throughput open reading frame detection, frameshift correction and includes a functional, comparative and phylogenetic toolbox, making use of 175 reference proteomes. Benchmarking and comparison against state-of-the-art transcript analysis tools reveals the efficiency and unique features of the TRAPID system.}, language = {en} } @article{RuederSauterKratzetal.2013, author = {R{\"u}der, Constantin and Sauter, Tilman and Kratz, Karl and Haase, Tobias and Peter, Jan and Jung, Friedrich and Lendlein, Andreas and Zohlnh{\"o}fer, Dietlind}, title = {Influence of fibre diameter and orientation of electrospun copolyetheresterurethanes on smooth muscle and endothelial cell behaviour}, series = {Clinical hemorheology and microcirculation : blood flow and vessels}, volume = {55}, journal = {Clinical hemorheology and microcirculation : blood flow and vessels}, number = {4}, publisher = {IOS Press}, address = {Amsterdam}, issn = {1386-0291}, doi = {10.3233/CH-131787}, pages = {513 -- 522}, year = {2013}, abstract = {Polymers exhibiting cell-selective effects represent an extensive research field with high relevance for biomedical applications e.g. in the cardiovascular field supporting re-endothelialization while suppressing smooth muscle cell overgrowth. Such an endothelial cell-selective effect could be recently demonstrated for a copolyetheresterurethane (PDC) containing biodegradable poly(p-dioxanone) and poly(epsilon-caprolactone) segments, which selectively enhanced the adhesion of human umbilical vein endothelial cells (HUVEC) while suppressing the attachment of smooth muscle cells (SMC). In this study we investigated the influence of the fibre orientation (random and aligned) and fibre diameter (2 mu m and 500 nm) of electrospun PDC scaffolds on the adhesion, proliferation and apoptosis of HUVEC and SMC. Adhesion, viability and proliferation of HUVEC was diminished when the fibre diameter was reduced to a submicron scale, while the orientation of the microfibres did only slightly influence the cellular behaviour. In contrast, a submicron fibre diameter improved SMC viability. In conclusion, PDC scaffolds with micron-sized single fibres could be promising candidate materials for cell-selective stent coatings.}, language = {en} } @article{DrygalaWernerZoller2013, author = {Drygala, Frank and Werner, Ulrike and Zoller, Hinrich}, title = {Diet composition of the invasive raccoon dog (Nyctereutes procyonoides) and the native red fox (Vulpes vulpes) in north-east Germany}, series = {Hystrix : the Italian journal of mammalogy}, volume = {24}, journal = {Hystrix : the Italian journal of mammalogy}, number = {2}, publisher = {Associazione Teriologica Romana}, address = {Roma}, issn = {0394-1914}, doi = {10.4404/hystrix.-24.2-8867}, pages = {190 -- 194}, year = {2013}, abstract = {Invasive alien species pose a great threat to the integrity of natural communities by competition with and predation on native species. In Germany the invasive raccoon dog (Nyctereutes procyonoides) and the native red fox (Vulpes vulpes) occupy a similar ecological niche. Therefore, the aim of our study was to discover the extent of exploitative diet competition between these two generalist carnivores. Carcasses of red foxes (n=256) and raccoon dogs (n=253) were collected throughout Mecklenburg Western-Pomerania (north-east Germany) and stomachs contains were analysed. Frequency of occurrence and biomass share indicate that both canids are omnivorous and pursue opportunistic feeding strategies. Small mammals and edible plant material were the most important food resources for red foxes and raccoon dogs. Nonetheless, interspecies differences were recorded for edible plant material, small mammals and insects. While red foxes mostly feed on voles, raccoon dogs consumed mice and shrews as often as voles. Only raccoon dogs preyed on amphibians. There were no differences in carrion consumption, both species scavenged on wild boar and we found clear competition for carrion year-round. Moreover, there was evidence that two red foxes foraged on raccoon dogs and vice versa. The mean annual interspecies diet overlap index was relatively high. The diets determined for raccoon dogs and red foxes were quite similar and a similar food niche breadth was recorded. However, only minor competition is assumed to take place since differences in feeding habits do exist.}, language = {en} } @article{MahlerSchneiderDiGiacomoetal.2013, author = {Mahler, B. and Schneider, A. R. R. and Di Giacomo, A. S. and Di Giacomo, A. G. and Reboreda, Juan C. and Tiedemann, Ralph}, title = {Microsatellite usefulness is independent of phylogenetic distance in Tyrant flycatchers (Aves: Tyrannidae) - a test using two globally threatened species}, series = {Genetics and molecular research}, volume = {12}, journal = {Genetics and molecular research}, number = {3}, publisher = {FUNPEC}, address = {Ribeirao Preto}, issn = {1676-5680}, doi = {10.4238/2013.August.12.12}, pages = {2966 -- 2972}, year = {2013}, abstract = {Tyrant flycatchers (Aves: Tyrannidae) are endemic to the New World, and many species of this group are threatened or near-threatened at the global level. The aim of this study was to test the 18 microsatellite markers that have been published for other Tyrant flycatchers in the Strange-tailed Tyrant (Alectrurus risora) and the Sharp-tailed Tyrant (Culicivora caudacuta), two endemic species of southern South American grasslands that are classified as vulnerable. We also analyzed the usefulness of loci in relation to phylogenetic distance to the source species. Amplification success was high in both species (77 to 83\%) and did not differ between the more closely and more distantly related species to the source species. Polymorphism success was also similar for both species, with 9 and 8 loci being polymorphic, respectively. An increased phylogenetic distance thus does not gradually lead to allelic or locus dropouts, implying that in Tyrant flycatchers, the published loci are useful independent of species relatedness.}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and Hoegele, Michael and Imkeller, Peter}, title = {The source of stochastic models in conceptual climate dynamics}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, number = {3}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8}, pages = {151 -- 157}, year = {2013}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and H{\"o}gele, Michael and Imkeller, Peter}, title = {Localization and metastability}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_7}, pages = {131 -- 149}, year = {2013}, abstract = {In this chapter, equipped with our previously obtained knowledge of exit and transition times in the limit of small noise amplitude ??0 , we shall investigate the global asymptotic behavior of our jump diffusion process in the time scale in which transitions occur, i.e. in the scale given by ?0(?)=?(1?Bc?(0)),?,?>0 . It turns out that in this time scale, the switching of the diffusion between neighborhoods of the stable solutions ? ± can be well described by a Markov chain jumping back and forth between two states with a characteristic Q-matrix determined by the quantities ?((D±0)c)?(Bc?(0)) as jumping rates.}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and Hoegele, Michael and Imkeller, Peter}, title = {Asymptotic transition times}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_6}, pages = {121 -- 130}, year = {2013}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and Hoegele, Michael and Imkeller, Peter}, title = {Asymptotic exit times}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_5}, pages = {87 -- 120}, year = {2013}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and Hoegele, Michael and Imkeller, Peter}, title = {The small deviation of the small noise solution}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_4}, pages = {69 -- 85}, year = {2013}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and H{\"o}gele, Michael and Imkeller, Peter}, title = {The stochastic chafee-infante equation}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_3}, pages = {45 -- 68}, year = {2013}, abstract = {In this preparatory chapter, the tools of stochastic analysis needed for the investigation of the asymptotic behavior of the stochastic Chafee-Infante equation are provided. In the first place, this encompasses a recollection of basic facts about L{\´e}vy processes with values in Hilbert spaces. Playing the role of the additive noise processes perturbing the deterministic Chafee-Infante equation in the systems the stochastic dynamics of which will be our main interest, symmetric ?-stable L{\´e}vy processes are in the focus of our investigation (Sect. 3.1).}, language = {en} } @article{DebusscheHoegeleImkeller2013, author = {Debussche, Arnaud and H{\"o}gele, Michael and Imkeller, Peter}, title = {The Fine Dynamics of the Chafee-Infante Equation}, series = {Lecture notes in mathematics : a collection of informal reports and seminars}, volume = {2085}, journal = {Lecture notes in mathematics : a collection of informal reports and seminars}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-319-00828-8; 978-3-319-00827-1}, issn = {0075-8434}, doi = {10.1007/978-3-319-00828-8_2}, pages = {11 -- 43}, year = {2013}, abstract = {In this chapter, we introduce the deterministic Chafee-Infante equation. This equation has been the subject of intense research and is very well understood now. We recall some properties of its longtime dynamics and in particular the structure of its attractor. We then define reduced domains of attraction that will be fundamental in our study and give a result describing precisely the time that a solution starting form a reduced domain of attraction needs to reach a stable equilibrium. This result is then proved using the detailed knowledge of the attractor and classical tools such as the stable and unstable manifolds in a neighborhood of an equilibrium.}, language = {en} } @article{LiChenWangetal.2013, author = {Li, Jian and Chen, You-Peng and Wang, Zi-Neng and Liu, Tie-Bin and Chen, Dan and Dong, Yun-Peng and Hocher, Berthold}, title = {A functional fetal HSD11B2[CA]n microsatellite polymorphism is associated with maternal serum cortisol concentrations in pregnant women}, series = {Kidney \& blood pressure research : official organ of the Gesellschaft f{\"u}r Nephrologie}, volume = {38}, journal = {Kidney \& blood pressure research : official organ of the Gesellschaft f{\"u}r Nephrologie}, number = {1}, publisher = {Karger}, address = {Basel}, issn = {1420-4096}, doi = {10.1159/000355761}, pages = {132 -- 141}, year = {2013}, abstract = {Background/Aims: Cortisol plays an important role during pregnancy. It controls maternal glucose metabolism and fetal development. Cortisol metabolism is partially controlled by the 11b-HSD2. This enzyme is expressed in the kidney and human placenta. The activity of the enzyme is partially controlled by functional polymorphisms: the HSD11B2[CA]n microsatellite polymorphism. The impact of this functional gene polymorphism on cortisol metabolism and potential effects on the newborn's is unknown so far. Methods: In the current prospective birth cohort study in southern Asia, we analyzed the association of the HSD11B2[CA]n microsatellite polymorphisms in 187 mothers and their newborn's on maternal and newborn's serum cortisol concentrations. Results: Using multivariable regression analyses considering known confounding ( gestational age, newborn's gender, the labor uterine contraction states and the timing during the day of blood taking), we showed that the fetal HSD11B2[CA]n microsatellite polymorphisms in the first intron was related to maternal cortisol concentration ( R2=0.26, B=96.27, p=0.007), whereas as the newborn's cortisol concentrations were independent of fetal and maternal HSD11B2[CA] n microsatellite polymorphism. Conclusions: Our study showed for the first time that the fetal HSD11B2[CA]n microsatellite polymorphism of the HSD11B2 gene in healthy uncomplicated human pregnancy is associated with maternal cortisol concentration. This indicates that fetal genes controlling cortisol metabolism may affect maternal cortisol concentration and hence physiology in healthy pregnant women.}, language = {en} } @article{Warditz2013, author = {Warditz, Vladislava Maria}, title = {The linguistic Reception of the French Novel in Russia the Phenomenon of the Argot in Hugo's Les Miserables and in Krestovskij's Peterburgskie truscoby}, series = {Zeitschrift f{\"u}r Slawistik}, volume = {58}, journal = {Zeitschrift f{\"u}r Slawistik}, number = {4}, publisher = {De Gruyter}, address = {Berlin}, issn = {0044-3506}, doi = {10.1524/slaw.2013.58.4.391}, pages = {391 -- 416}, year = {2013}, language = {de} } @article{Kosta2013, author = {Kosta, Peter}, title = {Ambiguity and humor in translation}, series = {Zeitschrift f{\"u}r Slawistik}, volume = {58}, journal = {Zeitschrift f{\"u}r Slawistik}, number = {3}, publisher = {De Gruyter}, address = {Berlin}, issn = {0044-3506}, doi = {10.1524/slaw.2013.58.3.297}, pages = {297 -- 324}, year = {2013}, language = {de} } @article{Goppelsroeder2013, author = {Goppelsroeder, Fabian}, title = {Bloom and the metabolism of modern}, series = {Poetica : Zeitschrift f{\"u}r Sprach- und Literaturwissenschaft}, volume = {45}, journal = {Poetica : Zeitschrift f{\"u}r Sprach- und Literaturwissenschaft}, number = {3-4}, publisher = {Fink}, address = {Paderborn}, issn = {0303-4178}, pages = {377 -- 389}, year = {2013}, language = {de} } @article{OberhaensliKoralayCandanetal.2013, author = {Oberh{\"a}nsli, Roland and Koralay, E. and Candan, Osman and Pourteau, Amaury and Bousquet, Romain}, title = {Late cretaceous eclogitic high-pressure relics in the Bitlis Massif}, series = {Geodinamica acta : revue de g{\´e}ologie dynamique et de g{\´e}ographie physique}, volume = {26}, journal = {Geodinamica acta : revue de g{\´e}ologie dynamique et de g{\´e}ographie physique}, number = {3-4}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0985-3111}, doi = {10.1080/09853111.2013.858951}, pages = {175 -- 190}, year = {2013}, abstract = {A new occurrence of eclogites was found in the Kesandere valley in the eastern most part of the Bitlis complex, SE Anatolia. These high-pressure (HP) relics were preserved in calc-arenitic metasediments within the high-grade metamorphic basement of the Bitlis complex. The eclogitic parageneses were strongly overprinted during decompression and heating. These new eclogites locality complements the evidence of blueschist-facies metamorphism documented recently in the meta-sedimentary cover sequence of this part of the Bitlis complex. Thermodynamic calculations suggest peak conditions of ca. 480-540 degrees C/1.9-2.4GPa. New U/Pb dates of 84.4 +/-.9 and 82.4 +/-.9Ma were obtained on zircons from two Kesandere eclogite samples. On the basis of geochemical criteria, these dates are interpreted to represent zircon crystallization during the eclogitic peak stage. Kesandere eclogites differ from those previously described in the western Bitlis complex (Mt. Gablor locality) in terms of lithologic association, protolithic origin, and peak P-T conditions (600-650 degrees C/1.0-2.0GPa, respectively). On the other hand, eclogitic metamorphism of Kesandere metasediments occurred shortly before blueschist-facies metamorphism of the sedimentary cover (79-74Ma Ar-40/Ar-39 white mica). Therefore, the exhumation of Kesandere eclogites started between ca. 82 and 79Ma, while the meta-sedimentary cover was being buried. During this short time span, Kesandere eclogite were likely uplifted from similar to 65 to 35km depth, indicating a syn-subduction exhumation rate of similar to 4.3mm/a. Subsequently, eclogite- and blueschist-facies rocks were likely retrogressed contemporarily during collision-type metamorphism (around 72-69Ma). The Bitlis HP rocks thus sample a subduction zone that separated the Bitlis-Puturge (Bistun?) block from the South-Armenian block, further north. To the south, Eocene metasediments of the Urse formation are imbricated below the Bitlis complex. They contain (post Eocene) blueschists, testifying separation from the Arabian plate and southward migration of the subduction zone. The HT overprint of Kesandere eclogites can be related to the asthenospheric flow provoked by subducting slab retreat or break off.}, language = {en} } @article{VoethHerbstLiess2013, author = {V{\"o}th, Markus and Herbst, Uta and Liess, Frank}, title = {We know exactly what you want the development of a completely individualised conjoint analysis}, series = {International journal of market research}, volume = {55}, journal = {International journal of market research}, number = {3}, publisher = {Market Research Society}, address = {London}, issn = {1470-7853}, doi = {10.2501/IJMR-2013-038}, pages = {437 -- 458}, year = {2013}, abstract = {Improving the predictive validity of conjoint analysis has been an important research objective for many years. Whereas the majority of attempts have been different approaches to preference modelling, data collection or product presentation, only a few scholars have tried to improve predictive validity by individualising conjoint designs. This comes as a surprise because many markets have observed an augmented demand for customised products and highly heterogeneous customers' preferences. Against this background, the authors develop a conjoint variant based on a completely individualised conjoint design. More concretely, the new approach not only individualises the attributes, but also the attribute levels. The results of a comprehensive empirical study yield a significantly higher validity than existing standardised-level conjoint approaches. Consequently, they help marketers to gain deeper insights into their customers' preferences.}, language = {en} } @article{BassoQiuWirgesetal.2013, author = {Basso, Heitor Cury and Qiu, Xunlin and Wirges, Werner and Gerhard, Reimund}, title = {Temporal evolution of the re-breakdown voltage in small gaps from nanoseconds to milliseconds}, series = {Applied physics letters}, volume = {102}, journal = {Applied physics letters}, number = {1}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0003-6951}, doi = {10.1063/1.4773518}, pages = {5}, year = {2013}, abstract = {A detailed understanding of electric breakdown in dielectrics is of scientific and technological interest. In gaseous dielectrics, a so-called re-breakdown is sometimes observed after extinction of the previous discharge. Although time-dependent re-breakdown voltage is essentially known, its behavior immediately after the previous discharge is not precisely understood. We present an electronic circuit for accurate measurements of the time-dependent re-breakdown voltage in small gaps from tens of nanoseconds to several milliseconds after the previous spark. Results from such experiments are compared with earlier findings, and relevant physical mechanisms such as heating of the gas, decay of the plasma, and ionization of excited atoms and molecules are discussed. It is confirmed that the thermal model is not valid at times below several microseconds.}, language = {en} } @article{SchulzBarkaiMetzler2013, author = {Schulz, Johannes H. P. and Barkai, Eli and Metzler, Ralf}, title = {Aging effects and population splitting in single-particle trajectoryaverages}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {2}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.020602}, pages = {5}, year = {2013}, abstract = {We study time averages of single particle trajectories in scale-free anomalous diffusion processes, in which the measurement starts at some time t(a) > 0 after initiation of the process at t = 0. Using aging renewal theory, we show that for such nonstationary processes a large class of observables are affected by a unique aging function, which is independent of boundary conditions or the external forces. Moreover, we discuss the implications of aging induced population splitting: with growing age ta of the process, an increasing fraction of particles remains motionless in a measurement of fixed duration. Consequences for single biomolecule tracking in live cells are discussed.}, language = {en} } @article{vonderLippeBullockKowariketal.2013, author = {von der Lippe, Moritz and Bullock, James M. and Kowarik, Ingo and Knopp, Tatjana and Wichmann, Matthias}, title = {Human-mediated dispersal of seeds by the airflow of vehicles}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {1}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0052733}, pages = {10}, year = {2013}, abstract = {Human-mediated dispersal is known as an important driver of long-distance dispersal for plants but underlying mechanisms have rarely been assessed. Road corridors function as routes of secondary dispersal for many plant species but the extent to which vehicles support this process remains unclear. In this paper we quantify dispersal distances and seed deposition of plant species moved over the ground by the slipstream of passing cars. We exposed marked seeds of four species on a section of road and drove a car along the road at a speed of 48 km/h. By tracking seeds we quantified movement parallel as well as lateral to the road, resulting dispersal kernels, and the effect of repeated vehicle passes. Median distances travelled by seeds along the road were about eight meters for species with wind dispersal morphologies and one meter for species without such adaptations. Airflow created by the car lifted seeds and resulted in longitudinal dispersal. Single seeds reached our maximum measuring distance of 45 m and for some species exceeded distances under primary dispersal. Mathematical models were fit to dispersal kernels. The incremental effect of passing vehicles on longitudinal dispersal decreased with increasing number of passes as seeds accumulated at road verges. We conclude that dispersal by vehicle airflow facilitates seed movement along roads and accumulation of seeds in roadside habitats. Dispersal by vehicle airflow can aid the spread of plant species and thus has wide implications for roadside ecology, invasion biology and nature conservation.}, language = {en} } @article{ArlenAuneBeilickeetal.2013, author = {Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cesarini, A. and Ciupik, L. and Connolly, M. P. and Cui, W. and Dickherber, R. and Dumm, J. and Errando, M. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Humensky, T. B. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Maier, G. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Tsurusaki, K. and Varlotta, A. and Vincent, S. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B. and Jorstad, S. G. and MacDonald, N. R. and Marscher, A. P. and Smith, P. S. and Walker, R. C. and Hovatta, T. and Richards, J. and Max-Moerbeck, W. and Readhead, A. and Lister, M. L. and Kovalev, Y. Y. and Pushkarev, A. B. and Gurwell, M. A. and Lahteenmaki, A. and Nieppola, E. and Tornikoski, M. and Jarvela, E.}, title = {Rapid TeV Gamma-Ray flaring of bl lacertae}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {762}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {VERITAS Collaboration}, issn = {0004-637X}, doi = {10.1088/0004-637X/762/2/92}, pages = {13}, year = {2013}, abstract = {We report on the detection of a very rapid TeV gamma-ray flare from BL Lacertae on 2011 June 28 with the Very Energetic Radiation Imaging Telescope Array System (VERITAS). The flaring activity was observed during a 34.6 minute exposure, when the integral flux above 200 GeV reached (3.4 +/- 0.6) x 10(-6) photons m(-2) s(-1), roughly 125\% of the Crab Nebula flux measured by VERITAS. The light curve indicates that the observations missed the rising phase of the flare but covered a significant portion of the decaying phase. The exponential decay time was determined to be 13 +/- 4 minutes, making it one of the most rapid gamma-ray flares seen from a TeV blazar. The gamma-ray spectrum of BL Lacertae during the flare was soft, with a photon index of 3.6 +/- 0.4, which is in agreement with the measurement made previously by MAGIC in a lower flaring state. Contemporaneous radio observations of the source with the Very Long Baseline Array revealed the emergence of a new, superluminal component from the core around the time of the TeV gamma-ray flare, accompanied by changes in the optical polarization angle. Changes in flux also appear to have occurred at optical, UV, and GeV gamma-ray wavelengths at the time of the flare, although they are difficult to quantify precisely due to sparse coverage. A strong flare was seen at radio wavelengths roughly four months later, which might be related to the gamma-ray flaring activities. We discuss the implications of these multiwavelength results.}, language = {en} } @article{GodecMetzler2013, author = {Godec, Aljaz and Metzler, Ralf}, title = {Finite-Time effects and ultraweak ergodicity breaking in superdiffusive dynamics}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {2}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.020603}, pages = {5}, year = {2013}, abstract = {We study the ergodic properties of superdiffusive, spatiotemporally coupled Levy walk processes. For trajectories of finite duration, we reveal a distinct scatter of the scaling exponents of the time averaged mean squared displacement (delta x(2)) over bar around the ensemble value 3 - alpha (1 < alpha < 2) ranging from ballistic motion to subdiffusion, in strong contrast to the behavior of subdiffusive processes. In addition we find a significant dependence of the average of (delta x(2)) over bar over an ensemble of trajectories as a function of the finite measurement time. This so-called finite-time amplitude depression and the scatter of the scaling exponent is vital in the quantitative evaluation of superdiffusive processes. Comparing the long time average of the second moment with the ensemble mean squared displacement, these only differ by a constant factor, an ultraweak ergodicity breaking.}, language = {en} } @article{LiuSiblyGrimmetal.2013, author = {Liu, Chun and Sibly, Richard M. and Grimm, Volker and Thorbek, Pernille}, title = {Linking pesticide exposure and spatial dynamics an individual-based model of wood mouse (Apodemus sylvaticus) populations in agricultural landscapes}, series = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, volume = {248}, journal = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-3800}, doi = {10.1016/j.ecolmodel.2012.09.016}, pages = {92 -- 102}, year = {2013}, abstract = {The wood mouse is a common and abundant species in agricultural landscape and is a focal species in pesticide risk assessment. Empirical studies on the ecology of the wood mouse have provided sufficient information for the species to be modelled mechanistically. An individual-based model was constructed to explicitly represent the locations and movement patterns of individual mice. This together with the schedule of pesticide application allows prediction of the risk to the population from pesticide exposure. The model included life-history traits of wood mice as well as typical landscape dynamics in agricultural farmland in the UK. The model obtains a good fit to the available population data and is fit for risk assessment purposes. It can help identify spatio-temporal situations with the largest potential risk of exposure and enables extrapolation from individual-level endpoints to population-level effects. Largest risk of exposure to pesticides was found when good crop growth in the "sink" fields coincided with high "source" population densities in the hedgerows.}, language = {en} } @article{MoskalikShainyanAstakhovaetal.2013, author = {Moskalik, Mikhail Yu and Shainyan, Bagrat A. and Astakhova, Vera V. and Schilde, Uwe}, title = {Oxidative addition of trifluoromethanesulfonamide to cycloalkadienes}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {2}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2012.10.099}, pages = {705 -- 711}, year = {2013}, abstract = {In the oxidative system (t-BuOCl+NaI) trifluoromethanesulfonamide is regio- and stereoselectively added to only one double bond of cyclopentadiene and 1,3-cyclohexadiene giving rise to 1,1,1-trifluoro-N-(5-iodocyclopent-2-en-1-yl)methanesulfonamide 7 and trans-N,N'-cyclohex-3-en-1,2-diylbis(1,1,1-trifluoromethanesulfonamide) 8. The structure of 7 and 8 was determined by X-ray, NMR, and MS. With 1,4-cyclohexadiene, addition to both double bonds occurs with the formation of N,N'-(4-chloro-5-iodocyclohexan-1,2-diyl)bis(1,1,1-trifluoromethanesulfonamide) 9. Under the action of sodium iodide in acetone, the latter product undergoes halogenophilic attack with the reduction of the CHI group and elimination of HCl to give trans-N,N'-cyclohex-4-en-1,2-diylbis(1,1,1-trifluoromethanesulfonamide) 10, whose structure was also determined by X-ray analysis. 1,3,5-Cycloheptatriene under these conditions is oxidized to benzaldehyde and does not react with trifluoromethanesulfonamide.}, language = {en} } @article{HeckmannSchwanghart2013, author = {Heckmann, Tobias and Schwanghart, Wolfgang}, title = {Geomorphic coupling and sediment connectivity in an alpine catchment - Exploring sediment cascades using graph theory}, series = {Geomorphology : an international journal on pure and applied geomorphology}, volume = {182}, journal = {Geomorphology : an international journal on pure and applied geomorphology}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0169-555X}, doi = {10.1016/j.geomorph.2012.10.033}, pages = {89 -- 103}, year = {2013}, abstract = {Through their relevance for sediment budgets and the sensitivity of geomorphic systems, geomorphic coupling and (sediment) connectivity represent important topics in geomorphology. Since the introduction of the systems perspective to physical geography by Chorley and Kennedy (1971), a catchment has been perceived as consisting of landscape elements (e.g. landforms, subcatchments) that are coupled by geomorphic processes through sediment transport. In this study, we present a novel application of mathematical graph theory to explore the network structure of coarse sediment pathways in a central alpine catchment. Numerical simulation models for rockfall, debris flows, and (hillslope and channel) fluvial processes are used to establish a spatially explicit graph model of sediment sources, pathways and sinks. The raster cells of a digital elevation model form the nodes of this graph, and simulated sediment trajectories represent the corresponding edges. Model results are validated by visual comparison with the field situation and aerial photos. The interaction of sediment pathways, i.e. where the deposits of a geomorphic process form the sources of another process, forms sediment cascades, represented by paths (a succession of edges) in the graph model. We show how this graph can be used to explore upslope (contributing area) and downslope (source to sink) functional connectivity by analysing its nodes, edges and paths. The analysis of the spatial distribution, composition and frequency of sediment cascades yields information on the relative importance of geomorphic processes and their interaction (however regardless of their transport capacity). In the study area, the analysis stresses the importance of mass movements and their interaction, e.g. the linkage of large rockfall source areas to debris flows that potentially enter the channel network. Moreover, it is shown that only a small percentage of the study area is coupled to the channel network which itself is longitudinally disconnected by natural and anthropogenic barriers. Besides the case study, we discuss the methodological framework and alternatives for node and edge representations of graph models in geomorphology. We conclude that graph theory provides an excellent methodological framework for the analysis of geomorphic systems, especially for the exploration of quantitative approaches towards sediment connectivity.}, language = {en} } @article{KahmenSchefussSachse2013, author = {Kahmen, Ansgar and Schefuss, Enno and Sachse, Dirk}, title = {Leaf water deuterium enrichment shapes leaf wax n-alkane delta D values of angiosperm plants I experimental evidence and mechanistic insights}, series = {Geochimica et cosmochimica acta : journal of the Geochemical Society and the Meteoritical Society}, volume = {111}, journal = {Geochimica et cosmochimica acta : journal of the Geochemical Society and the Meteoritical Society}, publisher = {Elsevier}, address = {Oxford}, issn = {0016-7037}, doi = {10.1016/j.gca.2012.09.003}, pages = {39 -- 49}, year = {2013}, abstract = {Leaf wax n-alkanes of terrestrial plants are long-chain hydrocarbons that can persist in sedimentary records over geologic timescales. Since meteoric water is the primary source of hydrogen used in leaf wax synthesis, the hydrogen isotope composition (delta D value) of these biomarkers contains information on hydrological processes. Consequently, leaf wax n-alkane delta D values have been advocated as powerful tools for paleohydrological research. The exact kind of hydrological information that is recorded in leaf wax n-alkanes remains, however, unclear because critical processes that determine their delta D values have not yet been resolved. In particular the effects of evaporative deuterium (D)-enrichment of leaf water on the delta D values of leaf wax n-alkanes have not yet been directly assessed and quantified. Here we present the results of a study where we experimentally tested if and by what magnitude evaporative D-enrichment of leaf water affects the delta D of leaf wax n-alkanes in angiosperm C3 and C4 plants. Our study revealed that n-alkane delta D values of all plants that we investigated were affected by evaporative D-enrichment of leaf water. For dicotyledonous plants we found that the full extent of leaf water evaporative D-enrichment is recorded in leaf wax n-alkane delta D values. For monocotyledonous plants we found that between 18\% and 68\% of the D-enrichment in leaf water was recorded in the delta D values of their n-alkanes. We hypothesize that the different magnitudes by which evaporative D-enrichment of leaf water affects the delta D values of leaf wax n-alkanes in monocotyledonous and dicotyledonous plants is the result of differences in leaf growth and development between these plant groups. Our finding that the evaporative D-enrichment of leaf water affects the delta D values of leaf wax n-alkanes in monocotyledonous and dicotyledonous plants albeit at different magnitudes - has important implications for the interpretation of leaf wax n-alkane delta D values from paleohydrological records. In addition, our finding opens the door to employ delta D values of leaf wax n-alkanes as new ecohydrological proxies for evapotranspiration that can be applied in contemporary plant and ecosystem research.}, language = {en} } @article{UnuabonahOluOwolabiTaubertetal.2013, author = {Unuabonah, Emmanuel Iyayi and Olu-Owolabi, Bamidele I. and Taubert, Andreas and Omolehin, Elizabeth B. and Adebowale, Kayode O.}, title = {SAPK a novel composite resin for water treatment with very high Zn2+, Cd2+, and Pb2+ adsorption capacity}, series = {Industrial \& engineering chemistry research}, volume = {52}, journal = {Industrial \& engineering chemistry research}, number = {2}, publisher = {American Chemical Society}, address = {Washington}, issn = {0888-5885}, doi = {10.1021/ie3024577}, pages = {578 -- 585}, year = {2013}, abstract = {A new sulfonated aniline-modified poly(vinyl alcohol)/K-feldspar (SAPK) composite was prepared. The cation-exchange capacity of the composite was found to be S times that of neat feldspar. The specific surface area and point of zero charge also changed significantly upon modification, from 15.6 +/- 0.1 m(2)/g and 2.20 (K-feldspar) to 73.6 +/- 0.3 m(2)/g and 1.91 (SAPK). Zn2+, Cd2+, and Pb2+ adsorption was found to be largely independent of pH, and the metal adsorption rate on SAPK was higher than that on neat feldspar. This particularly applies to the initial adsorption rates. The adsorption process involves both film and pore diffusion; film diffusion initially controls the adsorption. The Freundlich and Langmuir models were found to fit metal-ion adsorption on SAPK most accurately. Adsorption on neat feldspar was best fitted with a Langmuir model, indicating the formation of adsorbate monolayers. Both pure feldspar and SAPK showed better selectivity for Pb2+ than for Cd2+ or Zn2+.}, language = {en} } @article{SchubertPreisBlakesleyetal.2013, author = {Schubert, Marcel and Preis, Eduard and Blakesley, James C. and Pingel, Patrick and Scherf, Ullrich and Neher, Dieter}, title = {Mobility relaxation and electron trapping in a donor/acceptor copolymer}, series = {Physical review : B, Condensed matter and materials physics}, volume = {87}, journal = {Physical review : B, Condensed matter and materials physics}, number = {2}, publisher = {American Physical Society}, address = {College Park}, issn = {1098-0121}, doi = {10.1103/PhysRevB.87.024203}, pages = {12}, year = {2013}, abstract = {To address the nature of charge transport and the origin of severe (intrinsic) trapping in electron-transporting polymers, transient and steady-state charge transport measurements have been conducted on the prototype donor/acceptor copolymer poly[2,7-(9,9-dialkyl-fluorene)-alt-5,5-(4',7'-di-2-thienyl-2',1',3'-benzothiadiazole)] (PFTBTT). A charge-generation layer technique is used to selectively address transport of the desired charge carrier type, to perform time-of-flight measurements on samples with < 200 nm thickness, and to combine the time-of-flight and the photocharge extraction by linearly increasing voltage (photo-CELIV) techniques to investigate charge carrier dynamics over a wide time range. Significant trapping of free electrons is observed in the bulk of dioctyl-substituted PFTBTT (alt-PF8TBTT), introducing a strong relaxation of the charge carrier mobility with time. We used Monte-Carlo simulation to simulate the measured transient data and found that all measurements can be modeled with a single parameter set, with the charge transport behavior determined by multiple trapping and detrapping of electrons in an exponential trap distribution. The influence of the concomitant mobility relaxation on the transient photocurrent characteristics in photo-CELIV experiments is discussed and shown to explain subtle features that were seen in former publications but were not yet assigned to electron trapping. Comparable studies on PFTBTT copolymers with chemical modifications of the side chains and backbone suggest that the observed electron trapping is not caused by a distinct chemical species but rather is related to interchain interactions.}, language = {en} } @article{BauerMetzler2013, author = {Bauer, Maximilian and Metzler, Ralf}, title = {In vivo facilitated diffusion model}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {1}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0053956}, pages = {8}, year = {2013}, abstract = {Under dilute in vitro conditions transcription factors rapidly locate their target sequence on DNA by using the facilitated diffusion mechanism. However, whether this strategy of alternating between three-dimensional bulk diffusion and one-dimensional sliding along the DNA contour is still beneficial in the crowded interior of cells is highly disputed. Here we use a simple model for the bacterial genome inside the cell and present a semi-analytical model for the in vivo target search of transcription factors within the facilitated diffusion framework. Without having to resort to extensive simulations we determine the mean search time of a lac repressor in a living E. coli cell by including parameters deduced from experimental measurements. The results agree very well with experimental findings, and thus the facilitated diffusion picture emerges as a quantitative approach to gene regulation in living bacteria cells. Furthermore we see that the search time is not very sensitive to the parameters characterizing the DNA configuration and that the cell seems to operate very close to optimal conditions for target localization. Local searches as implied by the colocalization mechanism are only found to mildly accelerate the mean search time within our model.}, language = {en} } @article{BertzWoehlBruhnMietheetal.2013, author = {Bertz, Andreas and W{\"o}hl-Bruhn, Stefanie and Miethe, Sebastian and Tiersch, Brigitte and Koetz, Joachim and Hust, Michael and Bunjes, Heike and Menzel, Henning}, title = {Encapsulation of proteins in hydrogel carrier systems for controlled drug delivery influence of network structure and drug size on release rate}, series = {Journal of biotechnology}, volume = {163}, journal = {Journal of biotechnology}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0168-1656}, doi = {10.1016/j.jbiotec.2012.06.036}, pages = {243 -- 249}, year = {2013}, abstract = {Novel hydrogels based on hydroxyethyl starch modified with polyethylene glycol methacrylate (HES-P(EG)(6)MA) were developed as delivery system for the controlled release of proteins. Since the drug release behavior is supposed to be related to the pore structure of the hydrogel network the pore sizes were determined by cryo-SEM, which is a mild technique for imaging on a nanometer scale. The results showed a decreasing pore size and an increase in pore homogeneity with increasing polymer concentration. Furthermore, the mesh sizes of the hydrogels were calculated based on swelling data. Pore and mesh size were significantly different which indicates that both structures are present in the hydrogel. The resulting structural model was correlated with release data for bulk hydrogel cylinders loaded with FITC-dextran and hydrogel microspheres loaded with FITC-IgG and FITC-dextran of different molecular size. The initial release depended much on the relation between hydrodynamic diameter and pore size while the long term release of the incorporated substances was predominantly controlled by degradation of the network of the much smaller meshes.}, language = {en} } @article{NeigenfindGrimbsNikoloski2013, author = {Neigenfind, Jost and Grimbs, Sergio and Nikoloski, Zoran}, title = {On the relation between reactions and complexes of (bio)chemical reaction networks}, series = {Journal of theoretical biology}, volume = {317}, journal = {Journal of theoretical biology}, number = {2}, publisher = {Elsevier}, address = {London}, issn = {0022-5193}, doi = {10.1016/j.jtbi.2012.10.016}, pages = {359 -- 365}, year = {2013}, abstract = {Robustness of biochemical systems has become one of the central questions in systems biology although it is notoriously difficult to formally capture its multifaceted nature. Maintenance of normal system function depends not only on the stoichiometry of the underlying interrelated components, but also on the multitude of kinetic parameters. Invariant flux ratios, obtained within flux coupling analysis, as well as invariant complex ratios, derived within chemical reaction network theory, can characterize robust properties of a system at steady state. However, the existing formalisms for the description of these invariants do not provide full characterization as they either only focus on the flux-centric or the concentration-centric view. Here we develop a novel mathematical framework which combines both views and thereby overcomes the limitations of the classical methodologies. Our unified framework will be helpful in analyzing biologically important system properties.}, language = {en} } @article{HuebenerMariEisert2013, author = {Huebener, R. and Mari, Andrea and Eisert, Jens}, title = {Wick's theorem for matrix product states}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {4}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.040401}, pages = {5}, year = {2013}, abstract = {Matrix product states and their continuous analogues are variational classes of states that capture quantum many-body systems or quantum fields with low entanglement; they are at the basis of the density-matrix renormalization group method and continuous variants thereof. In this work we show that, generically, N-point functions of arbitrary operators in discrete and continuous translation invariant matrix product states are completely characterized by the corresponding two- and three-point functions. Aside from having important consequences for the structure of correlations in quantum states with low entanglement, this result provides a new way of reconstructing unknown states from correlation measurements, e. g., for one-dimensional continuous systems of cold atoms. We argue that such a relation of correlation functions may help in devising perturbative approaches to interacting theories.}, language = {en} } @article{AbramowskiAceroAharonianetal.2013, author = {Abramowski, Attila and Acero, F. and Aharonian, Felix A. and Akhperjanian, A. G. and Anton, Gisela and Balenderan, Shangkari and Balzer, Arnim and Barnacka, Anna and Becherini, Yvonne and Tjus, J. Becker and Bernl{\"o}hr, K. and Birsin, E. and Biteau, Jonathan and Bochow, A. and Boisson, Catherine and Bolmont, J. and Bordas, Pol and Brucker, J. and Brun, Francois and Brun, Pierre and Bulik, Tomasz and Carrigan, Svenja and Casanova, Sabrina and Cerruti, M. and Chadwick, Paula M. and Chaves, Ryan C. G. and Cheesebrough, A. and Colafrancesco, Sergio and Cologna, Gabriele and Conrad, Jan and Couturier, C. and Dalton, M. and Daniel, M. K. and Davids, I. D. and Degrange, B. and Deil, C. and deWilt, P. and Dickinson, H. J. and Djannati-Ata{\"i}, A. and Domainko, W. and Drury, L. O'C. and Dubus, G. and Dutson, K. and Dyks, J. and Dyrda, M. and Egberts, Kathrin and Eger, P. and Espigat, P. and Fallon, L. and Farnier, C. and Fegan, S. and Feinstein, F. and Fernandes, M. V. and Fernandez, D. and Fiasson, A. and Fontaine, G. and Foerster, A. and Fussling, Matthias and Gajdus, M. and Gallant, Y. A. and Garrigoux, T. and Gast, H. and Giebels, B. and Glicenstein, J. F. and Glueck, B. and Goering, D. and Grondin, M. -H. and Haeffner, S. and Hague, J. D. and Hahn, J. and Hampf, D. and Harris, J. and Heinz, S. and Heinzelmann, G. and Henri, G. and Hermann, G. and Hillert, A. and Hinton, James Anthony and Hofmann, W. and Hofverberg, P. and Holler, M. and Horns, D. and Jacholkowska, A. and Jahn, C. and Jamrozy, M. and Jung, I. and Kastendieck, M. A. and Katarzynski, K. and Katz, U. and Kaufmann, S. and Khelifi, B. and Klepser, S. and Klochkov, D. and Kluzniak, W. and Kneiske, T. and Komin, Nu and Kosack, K. and Kossakowski, R. and Krayzel, F. and Krueger, P. P. and Laffon, H. and Lamanna, G. and Lefaucheur, J. and Lemoine-Goumard, M. and Lenain, J. -P. and Lennarz, D. and Lohse, T. and Lopatin, A. and Lu, C. -C. and Marandon, V. and Marcowith, Alexandre and Masbou, J. and Maurin, G. and Maxted, N. and Mayer, M. and McComb, T. J. L. and Medina, M. C. and Mehault, J. and Menzler, U. and Moderski, R. and Mohamed, M. and Moulin, Emmanuel and Naumann, C. L. and Naumann-Godo, M. and de Naurois, M. and Nedbal, D. and Nekrassov, D. and Nguyen, N. and Niemiec, J. and Nolan, S. J. and Ohm, S. and Awilhelmi, E. de Ona and Opitz, B. and Ostrowski, M. and Oya, I. and Panter, M. and Parsons, R. D. and Arribas, M. Paz and Pekeur, N. W. and Pelletier, G. and Perez, J. and Petrucci, P. -O. and Peyaud, B. and Pita, S. and Puehlhofer, G. and Punch, M. and Quirrenbach, A. and Raue, M. and Reimer, A. and Reimer, O. and Renaud, M. and de los Reyes, R. and Rieger, F. and Ripken, J. and Rob, L. and Rosier-Lees, S. and Rowell, G. and Rudak, B. and Rulten, C. B. and Sahakian, V. and Sanchez, David M. and Santangelo, Andrea and Schlickeiser, R. and Schulz, A. and Schwanke, U. and Schwarzburg, S. and Schwemmer, S. and Sheidaei, F. and Skilton, J. L. and Sol, H. and Spengler, G. and Stawarz, L. and Steenkamp, R. and Stegmann, Christian and Stinzing, F. and Stycz, K. and Sushch, Iurii and Szostek, A. and Tavernet, J. -P. and Terrier, R. and Tluczykont, M. and Trichard, C. and Valerius, K. and van Eldik, C. and Vasileiadis, G. and Venter, C. and Viana, A. and Vincent, P. and Voelk, H. J. and Volpe, F. and Vorobiov, S. and Vorster, M. and Wagner, S. J. and Ward, M. and White, R. and Wierzcholska, A. and Wouters, D. and Zacharias, M. and Zajczyk, A. and Zdziarski, A. A. and Zech, Alraune and Zechlin, H. -S.}, title = {Search for Photon-Linelike Signatures from Dark Matter Annihilations with H.E.S.S.}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {4}, publisher = {American Physical Society}, address = {College Park}, organization = {HESS Collaboration}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.041301}, pages = {6}, year = {2013}, abstract = {Gamma-ray line signatures can be expected in the very-high-energy (E-gamma > 100 GeV) domain due to self-annihilation or decay of dark matter (DM) particles in space. Such a signal would be readily distinguishable from astrophysical gamma-ray sources that in most cases produce continuous spectra that span over several orders of magnitude in energy. Using data collected with the H. E. S. S. gamma-ray instrument, upper limits on linelike emission are obtained in the energy range between similar to 500 GeV and similar to 25 TeV for the central part of the Milky Way halo and for extragalactic observations, complementing recent limits obtained with the Fermi-LAT instrument at lower energies. No statistically significant signal could be found. For monochromatic gamma-ray line emission, flux limits of (2 x 10(-7)-2 x 10(-5)) m(-2)s(-1)sr(-1) and (1 x 10(-8)- 2 x 10(-6)) m(-2)s(-1)sr(-1) are obtained for the central part of the Milky Way halo and extragalactic observations, respectively. For a DM particle mass of 1 TeV, limits on the velocity- averaged DM annihilation cross section (chi chi ->gamma gamma) reach similar to 10(-27)cm(3)s(-1), based on the Einasto parametrization of the Galactic DM halo density profile. DOI: 10.1103/PhysRevLett.110.041301}, language = {en} } @article{GeisslerStuflerLoehmannsroebenetal.2013, author = {Geissler, Daniel and Stufler, Stefan and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Hildebrandt, Niko}, title = {Six-color time-resolved forster resonance energy transfer for ultrasensitive multiplexed biosensing}, series = {Journal of the American Chemical Society}, volume = {135}, journal = {Journal of the American Chemical Society}, number = {3}, publisher = {American Chemical Society}, address = {Washington}, issn = {0002-7863}, doi = {10.1021/ja310317n}, pages = {1102 -- 1109}, year = {2013}, abstract = {Simultaneous monitoring of multiple molecular interactions and multiplexed detection of several diagnostic biomarkers at very low concentrations have become important issues in advanced biological and chemical sensing. Here we present an optically multiplexed six-color Forster resonance energy transfer (FRET) biosensor for simultaneous monitoring of five different individual binding events. We combined simultaneous FRET from one Tb complex to five different organic dyes measured in a filter-based time-resolved detection format with a sophisticated spectral crosstalk correction, which results in very efficient background suppression. The advantages and robustness of the multiplexed FRET sensor were exemplified by analyzing a 15-component lung cancer immunoassay involving 10 different antibodies and five different tumor markers in a single 50 mu L human serum sample. The multiplexed biosensor offers clinically relevant detection limits in the low picomolar (ng/mL) concentration range for all five markers, thus providing an effective early screening tool for lung cancer with the possibility of distinguishing small-cell from non-small-cell lung carcinoma. This novel technology will open new doors for multiple biomarker diagnostics as well as multiplexed real-time imaging and spectroscopy.}, language = {en} } @article{KrauseBekkeringLindemann2013, author = {Krause, Florian and Bekkering, Harold and Lindemann, Oliver}, title = {A feeling for numbers shared metric for symbolic and tactile numerosities}, series = {Frontiers in psychology}, volume = {4}, journal = {Frontiers in psychology}, number = {3}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2013.00007}, pages = {8}, year = {2013}, abstract = {Evidence for an approximate analog system of numbers has been provided by the finding that the comparison of two numerals takes longer and is more error-prone if the semantic distance between the numbers becomes smaller (so-called numerical distance effect). Recent embodied theories suggest that analog number representations are based on previous sensory experiences and constitute therefore a common magnitude metric shared by multiple domains. Here we demonstrate the existence of a cross-modal semantic distance effect between symbolic and tactile numerosities. Participants received tactile stimulations of different amounts of fingers while reading Arabic digits and indicated verbally whether the amount of stimulated fingers was different from the simultaneously presented digit or not. The larger the semantic distance was between the two numerosities, the faster and more accurate participants made their judgments. This cross-modal numerosity distance effect suggests a direct connection between tactile sensations and the concept of numerical magnitude. A second experiment replicated the interaction between symbolic and tactile numerosities and showed that this effect is not modulated by the participants' finger counting habits. Taken together, our data provide novel evidence for a shared metric for symbolic and tactile numerosities as an instance of an embodied representation of numbers.}, language = {en} } @article{KlingstromSoldatovaStevensetal.2013, author = {Klingstrom, Tomas and Soldatova, Larissa and Stevens, Robert and Roos, T. Erik and Swertz, Morris A. and M{\"u}ller, Kristian M. and Kalas, Matus and Lambrix, Patrick and Taussig, Michael J. and Litton, Jan-Eric and Landegren, Ulf and Bongcam-Rudloff, Erik}, title = {Workshop on laboratory protocol standards for the molecular methods database}, series = {New biotechnology}, volume = {30}, journal = {New biotechnology}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1871-6784}, doi = {10.1016/j.nbt.2012.05.019}, pages = {109 -- 113}, year = {2013}, abstract = {Management of data to produce scientific knowledge is a key challenge for biological research in the 21st century. Emerging high-throughput technologies allow life science researchers to produce big data at speeds and in amounts that were unthinkable just a few years ago. This places high demands on all aspects of the workflow: from data capture (including the experimental constraints of the experiment), analysis and preservation, to peer-reviewed publication of results. Failure to recognise the issues at each level can lead to serious conflicts and mistakes; research may then be compromised as a result of the publication of non-coherent protocols, or the misinterpretation of published data. In this report, we present the results from a workshop that was organised to create an ontological data-modelling framework for Laboratory Protocol Standards for the Molecular Methods Database (MolMeth). The workshop provided a set of short- and long-term goals for the MolMeth database, the most important being the decision to use the established EXACT description of biomedical ontologies as a starting point.}, language = {en} } @article{StoyanovKolloscheRisseetal.2013, author = {Stoyanov, Hristiyan and Kollosche, Matthias and Risse, Sebastian and Wache, Remi and Kofod, Guggi}, title = {Soft conductive elastomer materials for stretchable electronics and voltage controlled artificial muscles}, series = {Advanced materials}, volume = {25}, journal = {Advanced materials}, number = {4}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0935-9648}, doi = {10.1002/adma.201202728}, pages = {578 -- 583}, year = {2013}, abstract = {Block copolymer elastomer conductors (BEC) are mixtures of block copolymers grafted with conducting polymers, which are found to support very large strains, while retaining a high level of conductivity. These novel materials may find use in stretchable electronics. The use of BEC is demonstrated in a capacitive strain sensor and in an artificial muscle of the dielectric elastomer actuator type, supporting more than 100\% actuation strain and capacity strain sensitivity up to 300\%.}, language = {en} } @article{BeyeneKatohWoldeGabrieletal.2013, author = {Beyene, Yonas and Katoh, Shigehiro and Wolde Gabriel, Giday and Hart, William K. and Uto, Kozo and Sudo, Masafumi and Kondo, Megumi and Hyodo, Masayuki and Renne, Paul R. and Suwa, Gen and Asfaw, Berhane}, title = {The characteristics and chronology of the earliest. Acheulean at Konso, Ethiopia}, series = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {110}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, number = {5}, publisher = {National Acad. of Sciences}, address = {Washington}, issn = {0027-8424}, doi = {10.1073/pnas.1221285110}, pages = {1584 -- 1591}, year = {2013}, abstract = {The Acheulean technological tradition, characterized by a large (>10 cm) flake-based component, represents a significant technological advance over the Oldowan. Although stone tool assemblages attributed to the Acheulean have been reported from as early as circa 1.6-1.75 Ma, the characteristics of these earliest occurrences and comparisons with later assemblages have not been reported in detail. Here, we provide a newly established chronometric calibration for the Acheulean assemblages of the Konso Formation, southern Ethiopia, which span the time period similar to 1.75 to <1.0 Ma. The earliest Konso Acheulean is chronologically indistinguishable from the assemblage recently published as the world's earliest with an age of similar to 1.75 Ma at Kokiselei, west of Lake Turkana, Kenya. This Konso assemblage is characterized by a combination of large picks and crude bifaces/unifaces made predominantly on large flake blanks. An increase in the number of flake scars was observed within the Konso Formation handaxe assemblages through time, but this was less so with picks. The Konso evidence suggests that both picks and handaxes were essential components of the Acheulean from its initial stages and that the two probably differed in function. The temporal refinement seen, especially in the handaxe forms at Konso, implies enhanced function through time, perhaps in processing carcasses with long and stable cutting edges. The documentation of the earliest Acheulean at similar to 1.75 Ma in both northern Kenya and southern Ethiopia suggests that behavioral novelties were being established in a regional scale at that time, paralleling the emergence of Homo erectus-like hominid morphology.}, language = {en} } @article{OhligerNesmeEisert2013, author = {Ohliger, Matthias and Nesme, V. and Eisert, J.}, title = {Efficient and feasible state tomography of quantum many-body systems}, series = {New journal of physics : the open-access journal for physics}, volume = {15}, journal = {New journal of physics : the open-access journal for physics}, number = {5}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1367-2630}, doi = {10.1088/1367-2630/15/1/015024}, pages = {19}, year = {2013}, abstract = {We present a novel method for performing quantum state tomography for many-particle systems, which are particularly suitable for estimating the states in lattice systems such as of ultra-cold atoms in optical lattices. We show that the need to measure a tomographically complete set of observables can be overcome by letting the state evolve under some suitably chosen random circuits followed by the measurement of a single observable. We generalize known results about the approximation of unitary two-designs, i.e. certain classes of random unitary matrices, by random quantum circuits and connect our findings to the theory of quantum compressed sensing. We show that for ultra-cold atoms in optical lattices established experimental techniques such as optical super-lattices, laser speckles and time-of-flight measurements are sufficient to perform fully certified, assumption-free tomography. This is possible without the need to address single sites in any step of the procedure. Combining our approach with tensor network methods-in particular, the theory of matrix product states-we identify situations where the effort of reconstruction is even constant in the number of lattice sites, allowing, in principle, to perform tomography on large-scale systems readily available in present experiments.}, language = {en} } @article{HuangHattermannKrysanovaetal.2013, author = {Huang, Shaochun and Hattermann, Fred and Krysanova, Valentina and Bronstert, Axel}, title = {Projections of climate change impacts on river flood conditions in Germany by combining three different RCMs with a regional eco-hydrological model}, series = {Climatic change : an interdisciplinary, intern. journal devoted to the description, causes and implications of climatic change}, volume = {116}, journal = {Climatic change : an interdisciplinary, intern. journal devoted to the description, causes and implications of climatic change}, number = {3-4}, publisher = {Springer}, address = {Dordrecht}, issn = {0165-0009}, doi = {10.1007/s10584-012-0586-2}, pages = {631 -- 663}, year = {2013}, abstract = {A general increase in precipitation has been observed in Germany in the last century, and potential changes in flood generation and intensity are now at the focus of interest. The aim of the paper is twofold: a) to project the future flood conditions in Germany accounting for various river regimes (from pluvial to nival-pluvial regimes) and under different climate scenarios (the high, A2, low, B1, and medium, A1B, emission scenarios) and b) to investigate sources of uncertainty generated by climate input data and regional climate models. Data of two dynamical Regional Climate Models (RCMs), REMO (REgional Model) and CCLM (Cosmo-Climate Local Model), and one statistical-empirical RCM, Wettreg (Wetterlagenbasierte Regionalisierungsmethode: weather-type based regionalization method), were applied to drive the eco-hydrological model SWIM (Soil and Water Integrated Model), which was previously validated for 15 gauges in Germany. At most of the gauges, the 95 and 99 percentiles of the simulated discharge using SWIM with observed climate data had a good agreement with the observed discharge for 1961-2000 (deviation within +/- 10 \%). However, the simulated discharge had a bias when using RCM climate as input for the same period. Generalized Extreme Value (GEV) distributions were fitted to the annual maximum series of river runoff for each realization for the control and scenario periods, and the changes in flood generation over the whole simulation time were analyzed. The 50-year flood values estimated for two scenario periods (2021-2060, 2061-2100) were compared to the ones derived from the control period using the same climate models. The results driven by the statistical-empirical model show a declining trend in the flood level for most rivers, and under all climate scenarios. The simulations driven by dynamical models give various change directions depending on region, scenario and time period. The uncertainty in estimating high flows and, in particular, extreme floods remains high, due to differences in regional climate models, emission scenarios and multi-realizations generated by RCMs.}, language = {en} } @article{GechevBeninaObataetal.2013, author = {Gechev, Tsanko S. and Benina, Maria and Obata, Toshihiro and Tohge, Takayuki and Neerakkal, Sujeeth and Minkov, Ivan and Hille, Jacques and Temanni, Mohamed-Ramzi and Marriott, Andrew S. and Bergstr{\"o}m, Ed and Thomas-Oates, Jane and Antonio, Carla and M{\"u}ller-R{\"o}ber, Bernd and Schippers, Jos H. M. and Fernie, Alisdair R. and Toneva, Valentina}, title = {Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis}, series = {Cellular and molecular life sciences}, volume = {70}, journal = {Cellular and molecular life sciences}, number = {4}, publisher = {Springer}, address = {Basel}, issn = {1420-682X}, doi = {10.1007/s00018-012-1155-6}, pages = {689 -- 709}, year = {2013}, abstract = {Haberlea rhodopensis is a resurrection plant with remarkable tolerance to desiccation. Haberlea exposed to drought stress, desiccation, and subsequent rehydration showed no signs of damage or severe oxidative stress compared to untreated control plants. Transcriptome analysis by next-generation sequencing revealed a drought-induced reprogramming, which redirected resources from growth towards cell protection. Repression of photosynthetic and growth-related genes during water deficiency was concomitant with induction of transcription factors (members of the NAC, NF-YA, MADS box, HSF, GRAS, and WRKY families) presumably acting as master switches of the genetic reprogramming, as well as with an upregulation of genes related to sugar metabolism, signaling, and genes encoding early light-inducible (ELIP), late embryogenesis abundant (LEA), and heat shock (HSP) proteins. At the same time, genes encoding other LEA, HSP, and stress protective proteins were constitutively expressed at high levels even in unstressed controls. Genes normally involved in tolerance to salinity, chilling, and pathogens were also highly induced, suggesting a possible cross-tolerance against a number of abiotic and biotic stress factors. A notable percentage of the genes highly regulated in dehydration and subsequent rehydration were novel, with no sequence homology to genes from other plant genomes. Additionally, an extensive antioxidant gene network was identified with several gene families possessing a greater number of antioxidant genes than most other species with sequenced genomes. Two of the transcripts most abundant during all conditions encoded catalases and five more catalases were induced in water-deficient samples. Using the pharmacological inhibitor 3-aminotriazole (AT) to compromise catalase activity resulted in increased sensitivity to desiccation. Metabolome analysis by GC or LC-MS revealed accumulation of sucrose, verbascose, spermidine, and gamma-aminobutyric acid during drought, as well as particular secondary metabolites accumulating during rehydration. This observation, together with the complex antioxidant system and the constitutive expression of stress protective genes suggests that both constitutive and inducible mechanisms contribute to the extreme desiccation tolerance of H. rhodopensis.}, language = {en} } @article{NazeOskinovaGosset2013, author = {Naze, Yael and Oskinova, Lida and Gosset, Eric}, title = {A detailed x-ray investigation of zeta puppis - II. the variability on short and long timescales}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {763}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/763/2/143}, pages = {21}, year = {2013}, abstract = {Stellar winds are a crucial component of massive stars, but their exact properties still remain uncertain. To shed some light on this subject, we have analyzed an exceptional set of X-ray observations of zeta Puppis, one of the closest and brightest massive stars. The sensitive light curves that were derived reveal two major results. On the one hand, a slow modulation of the X-ray flux (with a relative amplitude of up to 15\% over 16 hr in the 0.3-4.0 keV band) is detected. Its characteristic timescale cannot be determined with precision, but amounts from one to several days. It could be related to corotating interaction regions, known to exist in zeta Puppis from UV observations. Hour-long changes, linked to flares or to the pulsation activity, are not observed in the last decade covered by the XMM observations; the 17 hr tentative period, previously reported in a ROSAT analysis, is not confirmed either and is thus transient, at best. On the other hand, short-term changes are surprisingly small (<1\% relative amplitude for the total energy band). In fact, they are compatible solely with the presence of Poisson noise in the data. This surprisingly low level of short-term variability, in view of the embedded wind-shock origin, requires a very high fragmentation of the stellar wind, for both absorbing and emitting features (>10(5) parcels, comparing with a two-dimensional wind model). This is the first time that constraints have been placed on the number of clumps in an O-type star wind and from X-ray observations.}, language = {en} } @article{TrinhEllisBlandHawthornetal.2013, author = {Trinh, Christopher Q. and Ellis, Simon C. and Bland-Hawthorn, Joss and Lawrence, Jon S. and Horton, Anthony J. and Leon-Saval, Sergio G. and Shortridge, Keith and Bryant, Julia and Case, Scott and Colless, Matthew and Couch, Warrick and Freeman, Kenneth and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Gers, Luke and Glazebrook, Karl and Haynes, Roger and Lee, Steve and O'Byrne, John and Miziarski, Stan and Roth, Martin M. and Schmidt, Brian and Tinney, Christopher G. and Zheng, Jessica}, title = {Gnosis - the first instrument to use fiber bragg gratings for OH suppression}, series = {The astronomical journal}, volume = {145}, journal = {The astronomical journal}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-6256}, doi = {10.1088/0004-6256/145/2/51}, pages = {13}, year = {2013}, abstract = {The near-infrared is an important part of the spectrum in astronomy, especially in cosmology because the light from objects in the early universe is redshifted to these wavelengths. However, deep near-infrared observations are extremely difficult to make from ground-based telescopes due to the bright background from the atmosphere. Nearly all of this background comes from the bright and narrow emission lines of atmospheric hydroxyl (OH) molecules. The atmospheric background cannot be easily removed from data because the brightness fluctuates unpredictably on short timescales. The sensitivity of ground-based optical astronomy far exceeds that of near-infrared astronomy because of this long-standing problem. GNOSIS is a prototype astrophotonic instrument that utilizes "OH suppression fibers" consisting of fiber Bragg gratings and photonic lanterns to suppress the 103 brightest atmospheric emission doublets between 1.47 and 1.7 mu m. GNOSIS was commissioned at the 3.9 m Anglo-Australian Telescope with the IRIS2 spectrograph to demonstrate the potential of OH suppression fibers, but may be potentially used with any telescope and spectrograph combination. Unlike previous atmospheric suppression techniques GNOSIS suppresses the lines before dispersion and in a manner that depends purely on wavelength. We present the instrument design and report the results of laboratory and on-sky tests from commissioning. While these tests demonstrated high throughput (approximate to 60\%) and excellent suppression of the skylines by the OH suppression fibers, surprisingly GNOSIS produced no significant reduction in the interline background and the sensitivity of GNOSIS+IRIS2 is about the same as IRIS2. It is unclear whether the lack of reduction in the interline background is due to physical sources or systematic errors as the observations are detector noise dominated. OH suppression fibers could potentially impact ground-based astronomy at the level of adaptive optics or greater. However, until a clear reduction in the interline background and the corresponding increasing in sensitivity is demonstrated optimized OH suppression fibers paired with a fiber-fed spectrograph will at least provide a real benefit at low resolving powers.}, language = {en} } @article{SeifanSeifanSchiffersetal.2013, author = {Seifan, Merav and Seifan, Tal and Schiffers, Katja and Jeltsch, Florian and Tielboerger, Katja}, title = {Beyond the competition-colonization trade-off - linking multiple trait response to disturbance characteristics}, series = {The American naturalist : a bi-monthly journal devoted to the advancement and correlation of the biological sciences}, volume = {181}, journal = {The American naturalist : a bi-monthly journal devoted to the advancement and correlation of the biological sciences}, number = {2}, publisher = {Univ. of Chicago Press}, address = {Chicago}, issn = {0003-0147}, doi = {10.1086/668844}, pages = {151 -- 160}, year = {2013}, abstract = {Disturbances' role in shaping communities is well documented but highly disputed. We suggest replacing the overused two-trait trade-off approach with a functional group scheme, constructed from combinations of four key traits that represent four classes of species' responses to disturbances. Using model results and field observations from sites affected by two highly different disturbances, we demonstrated that popular dichotomous trade-offs are not sufficient to explain community dynamics, even if some emerge under certain conditions. Without disturbances, competition was only sufficient to predict species survival but not relative success, which required some escape mechanism (e.g., long-term dormancy). With highly predictable and large-scale disturbances, successful species showed a combination of high individual tolerance to disturbance and, more surprisingly, high competitive ability. When disturbances were less predictable, high individual tolerance and long-term seed dormancy were favored, due to higher environmental uncertainty. Our study demonstrates that theories relying on a small number of predefined trade-offs among traits (e.g., competition-colonization trade-off) may lead to unrealistic results. We suggest that the understanding of disturbance-community relationships can be significantly improved by employing sets of relevant trait assemblies instead of the currently common approach in which trade-offs are assumed in advance.}, language = {en} } @article{SalertKruegerBagnichetal.2013, author = {Salert, Beatrice Ch. D. and Krueger, Hartmut and Bagnich, Sergey A. and Unger, Thomas and Jaiser, Frank and Al-Sa'di, Mahmoud and Neher, Dieter and Hayer, Anna and Eberle, Thomas}, title = {New polymer matrix system for phosphorescent organic light-emitting diodes and the role of the small molecular co-host}, series = {Journal of polymer science : A, Polymer chemistry}, volume = {51}, journal = {Journal of polymer science : A, Polymer chemistry}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0887-624X}, doi = {10.1002/pola.26409}, pages = {601 -- 613}, year = {2013}, abstract = {A new matrix system for phosphorescent organic light-emitting diodes (OLEDs) based on an electron transporting component attached to an inert polymer backbone, an electronically neutral co-host, and a phosphorescent dye that serves as both emitter and hole conductor are presented. The inert co-host is used either as small molecules or covalently connected to the same chain as the electron-transporting host. The use of a small molecular inert co-host in the active layer is shown to be highly advantageous in comparison to a purely polymeric matrix bearing the same functionalities. Analysis of the dye phosphorescence decay in pure polymer, small molecular co-host film, and their blend lets to conclude that dye molecules distribute mostly in the small molecular co-host phase, where the co-host prevents agglomeration and self-quenching of the phosphorescence as well as energy transfer to the electron transporting units. In addition, the co-host accumulates at the anode interface where it acts as electron blocking layer and improves hole injection. This favorable phase separation between polymeric and small molecular components results in devices with efficiencies of about 47 cd/A at a luminance of 1000 cd/m(2). Investigation of OLED degradation demonstrates the presence of two time regimes: one fast component that leads to a strong decrease at short times followed by a slower decrease at longer times. Unlike the long time degradation, the efficiency loss that occurs at short times is reversible and can be recovered by annealing of the device at 180 degrees C. We also show that the long-time degradation must be related to a change of the optical and electrical bulk properties.}, language = {en} } @article{ChengVicente2013, author = {Cheng, Lisa Lai-Shen and Vicente, Luis}, title = {Verb doubling in Mandarin Chinese}, series = {Journal of East Asian linguistics}, volume = {22}, journal = {Journal of East Asian linguistics}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {0925-8558}, doi = {10.1007/s10831-012-9095-6}, pages = {1 -- 37}, year = {2013}, abstract = {This article examines two so-far-understudied verb doubling constructions in Mandarin Chinese, viz., verb doubling clefts and verb doubling lianaEuro broken vertical bar dou. We show that these constructions have the same internal syntax as regular clefts and lianaEuro broken vertical bar dou sentences, the doubling effect being epiphenomenal; therefore, we classify them as subtypes of the general cleft and lianaEuro broken vertical bar dou constructions, respectively, rather than as independent constructions. Additionally, we also show that, as in many other languages with comparable constructions, the two instances of the verb are part of a single movement chain, which has the peculiarity of allowing Spell-Out of more than one link.}, language = {en} } @article{NiemeyerMuschPietrowsky2013, author = {Niemeyer, Helen and Musch, Jochen and Pietrowsky, Reinhard}, title = {Publication Bias in meta-analyses of the efficacy of psychotherapeutic interventions for depression}, series = {Journal of consulting and clinical psychology}, volume = {81}, journal = {Journal of consulting and clinical psychology}, number = {1}, publisher = {American Psychological Association}, address = {Washington}, issn = {0022-006X}, doi = {10.1037/a0031152}, pages = {58 -- 74}, year = {2013}, abstract = {Objective: The aim of this study was to assess whether systematic reviews investigating psychotherapeutic interventions for depression are affected by publication bias. Only homogeneous data sets were included, as heterogeneous data sets can distort statistical tests of publication bias. Method: We applied Begg and Mazumdar's adjusted rank correlation test, Egger's regression analysis, and the trim and fill procedure to assess the presence and magnitude of publication bias in all homogeneous data sets of systematic reviews published up to September 2010. Results: Thirty-one data sets reported in 19 meta-analyses fulfilled our inclusion criteria. Significant bias was detected in 5 (16.13\%; rank correlation test) and 6 (19.35\%; Egger's regression analysis) of these data sets. Applying the trim and fill procedure to amend presumably missing studies rarely changed the assessment of the efficacy of therapeutic interventions, with 2 exceptions. In 1 data set psychotherapy was no longer found to be significantly more efficacious than pharmacotherapy in reducing dropout at posttreatment when publication bias was taken into account. In the 2nd data set, after correcting for publication bias, there was no longer evidence that depressed patients without comorbid personality disorder profited more from psychotherapy and pharmacotherapy than patients with comorbid personality disorder. Conclusions: The results suggest that taken together, psychotherapy research for depression is only marginally affected by the selective reporting of positive outcomes. With 2 notable exceptions, correcting for publication bias did not change the evaluation of the efficacy of psychotherapeutic interventions.}, language = {en} } @article{vanLeeuwenKern2013, author = {van Leeuwen, Judith and Kern, Kristine}, title = {The External Dimension of European Union Marine Governance: Institutional Interplay between the EU and the International Maritime Organization}, series = {Global environmental politics}, volume = {13}, journal = {Global environmental politics}, number = {1}, publisher = {MIT Press}, address = {Cambridge}, issn = {1526-3800}, doi = {10.1162/GLEP_a_00154}, pages = {69 -- +}, year = {2013}, abstract = {This article focuses on the emergence of a decentralized institutional complex, interplay management, and the institutional interplay between the International Maritime Organization (IMO) and the EU in the issue area of environmental shipping policies. It shows that the synergistic relationship between both institutions has been driven primarily by commitment and compliance mechanisms. By influencing IMO decision-making and improving the implementation and effectiveness of IMO conventions, the EU has become a driving force in international environmental shipping policies, and its new initiatives may even enhance its leadership role within the IMO in the future. Despite the still-existing lack of cognitive leadership by the EU, the synergies between both institutions provide evidence for the EU's leadership capacities in global environmental politics.}, language = {en} } @article{Schmidt2013, author = {Schmidt, Hans-J{\"u}rgen}, title = {The tetralogy of Birkhoff theorems}, series = {General relativity and gravitation}, volume = {45}, journal = {General relativity and gravitation}, number = {2}, publisher = {Springer}, address = {New York}, issn = {0001-7701}, doi = {10.1007/s10714-012-1478-5}, pages = {395 -- 410}, year = {2013}, abstract = {We classify the existent Birkhoff-type theorems into four classes: first, in field theory, the theorem states the absence of helicity 0- and spin 0-parts of the gravitational field. Second, in relativistic astrophysics, it is the statement that the gravitational far-field of a spherically symmetric star carries, apart from its mass, no information about the star; therefore, a radially oscillating star has a static gravitational far-field. Third, in mathematical physics, Birkhoff's theorem reads: up to singular exceptions of measure zero, the spherically symmetric solutions of Einstein's vacuum field equation with can be expressed by the Schwarzschild metric; for , it is the Schwarzschild-de Sitter metric instead. Fourth, in differential geometry, any statement of the type: every member of a family of pseudo-Riemannian space-times has more isometries than expected from the original metric ansatz, carries the name Birkhoff-type theorem. Within the fourth of these classes we present some new results with further values of dimension and signature of the related spaces; including them are some counterexamples: families of space-times where no Birkhoff-type theorem is valid. These counterexamples further confirm the conjecture, that the Birkhoff-type theorems have their origin in the property, that the two eigenvalues of the Ricci tensor of 2-D pseudo-Riemannian spaces always coincide, a property not having an analogy in higher dimensions. Hence, Birkhoff-type theorems exist only for those physical situations which are reducible to 2-D.}, language = {en} } @article{VorpahlDislichElsenbeeretal.2013, author = {Vorpahl, Peter and Dislich, Claudia and Elsenbeer, Helmut and M{\"a}rker, Michael and Schr{\"o}der-Esselbach, Boris}, title = {Biotic controls on shallow translational landslides}, series = {Earth surface processes and landforms : the journal of the British Geomorphological Research Group}, volume = {38}, journal = {Earth surface processes and landforms : the journal of the British Geomorphological Research Group}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0197-9337}, doi = {10.1002/esp.3320}, pages = {198 -- 212}, year = {2013}, abstract = {In undisturbed tropical montane rainforests massive organic layers accommodate the majority of roots and only a small fraction of roots penetrate the mineral soil. We investigated the contribution of vegetation to slope stability in such environments by modifying a standard model for slope stability to include an organic layer with distinct mechanical properties. The importance of individual model parameters was evaluated using detailed measurements of soil and vegetation properties to reproduce the observed depth of 11 shallow landslides in the Andes of southern Ecuador. By distinguishing mineral soil, organic layer and above-ground biomass, it is shown that in this environment vegetation provides a destabilizing effect mainly due to its contribution to the mass of the organic layer (up to 973 t ha-1 under wet conditions). Sensitivity analysis shows that the destabilizing effect of the mass of soil and vegetation can only be effective on slopes steeper than 37.9 degrees. This situation applies to 36\% of the study area. Thus, on the steep slopes of this megadiverse ecosystem, the mass of the growing forest promotes landsliding, which in turn promotes a new cycle of succession. This feedback mechanism is worth consideration in further investigations of the impact of landslides on plant diversity in similar environments.}, language = {en} } @article{NeuschaeferRubePatheNeuschaeferRubeHippenstieletal.2013, author = {Neusch{\"a}fer-Rube, Frank and Pathe-Neusch{\"a}fer-Rube, A. and Hippenstiel, S. and Kracht, M. and P{\"u}schel, Gerhard Paul}, title = {NF-kB-dependent IL-8 induction by prostaglandin EP2 receptors EP1 and EP4}, series = {British journal of pharmacology : journal of The British Pharmacological Society}, volume = {168}, journal = {British journal of pharmacology : journal of The British Pharmacological Society}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0007-1188}, doi = {10.1111/j.1476-5381.2012.02182.x}, pages = {704 -- 717}, year = {2013}, abstract = {Background and Purpose Recent studies suggested a role for PGE2 in the expression of the chemokine IL-8. PGE2 signals via four different GPCRs, EP1-EP4. The role of EP1 and EP4 receptors for IL-8 induction was studied in HEK293 cells, overexpressing EP1 (HEK-EP1), EP4 (HEK-EP4) or both receptors (HEK-EP1 + EP4). Experimental Approach IL-8 mRNA and protein induction and IL-8 promoter and NF-?B activation were assessed in EP expressing HEK cells. Key Results In HEK-EP1 and HEK-EP1 + EP4 but not HEK or HEK-EP4 cells, PGE2 activated the IL-8 promoter and induced IL-8 mRNA and protein synthesis. Stimulation of HEK-EP1 + EP4 cells with an EP1-specific agonist activated IL-8 promoter and induced IL-8 mRNA and protein, whereas a specific EP4 agonist neither activated the IL-8 promoter nor induced IL-8 mRNA and protein synthesis. Simultaneous stimulation of HEK- EP1 + EP4 cells with both agonists activated IL-8 promoter and induced IL-8 mRNA to the same extent as PGE2. In HEK-EP1 + EP4 cells, PGE2-mediated IL-8 promoter activation and IL-8 mRNA induction were blunted by inhibition of I?B kinase. PGE2 activated NF-?B in HEK-EP1, HEK-EP4 and HEK-EP1 + EP4 cells. In HEK-EP1 + EP4 cells, simultaneous activation of both receptors was needed for maximal PGE2-induced NF-?B activation. PGE2-stimulated NF-?B activation by EP1 was blocked by inhibitors of PLC, calcium-signalling and Src-kinase, whereas that induced by EP4 was only blunted by Src-kinase inhibition. Conclusions and Implications These findings suggest that PGE2-mediated NF-?B activation by simultaneous stimulation of EP1 and EP4 receptors induces maximal IL-8 promoter activation and IL-8 mRNA and protein induction.}, language = {en} } @article{LotinunKivirantaMatsubaraetal.2013, author = {Lotinun, Sutada and Kiviranta, Riku and Matsubara, Takuma and Alzate, Jorge A. and Neff, Lynn and L{\"u}th, Anja and Koskivirta, Ilpo and Kleuser, Burkhard and Vacher, Jean and Vuorio, Eero and Horne, William C. and Baron, Roland}, title = {Osteoclast-specific cathepsin K deletion stimulates S1P-dependent bone formation}, series = {The journal of clinical investigation}, volume = {123}, journal = {The journal of clinical investigation}, number = {2}, publisher = {American Society for Clinical Investigation}, address = {Ann Arbor}, issn = {0021-9738}, doi = {10.1172/JCI64840}, pages = {666 -- 681}, year = {2013}, abstract = {Cathepsin K (CTSK) is secreted by osteoclasts to degrade collagen and other matrix proteins during bone resorption. Global deletion of Ctsk in mice decreases bone resorption, leading to osteopetrosis, but also increases the bone formation rate (BFR). To understand how Ctsk deletion increases the BFR, we generated osteoclast- and osteoblast-targeted Ctsk knockout mice using floxed Ctsk alleles. Targeted ablation of Ctsk in hematopoietic cells, or specifically in osteoclasts and cells of the monocyte-osteoclast lineage, resulted in increased bone volume and BFR as well as osteoclast and osteoblast numbers. In contrast, targeted deletion of Ctsk in osteoblasts had no effect on bone resorption or BFR, demonstrating that the increased BFR is osteoclast dependent. Deletion of Ctsk in osteoclasts increased their sphingosine kinase 1 (Sphk1) expression. Conditioned media from Ctsk-deficient osteoclasts, which contained elevated levels of sphingosine-l-phosphate (S1P), increased alkaline phosphatase and mineralized nodules in osteoblast cultures. An S1P(1,3) receptor antagonist inhibited these responses. Osteoblasts derived from mice with Ctsk-deficient osteoclasts had an increased RANKL/OPG ratio, providing a positive feedback loop that increased the number of osteoclasts. Our data provide genetic evidence that deletion of CTSK in osteoclasts enhances bone formation in vivo by increasing the generation of osteoclast-derived S1P.}, language = {en} } @article{SchmidtBerger2013, author = {Schmidt, Bernd and Berger, Ren{\´e}}, title = {A deacetylation-diazotation-coupling sequence - palladium-catalyzed CC bond formation with acetanilides as formal leaving groups}, series = {Advanced synthesis \& catalysis}, volume = {355}, journal = {Advanced synthesis \& catalysis}, number = {2-3}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1615-4150}, doi = {10.1002/adsc.201200929}, pages = {463 -- 476}, year = {2013}, abstract = {Acetanilides can be deacetylated and diazotized in situ, and subsequently used in Pd-catalyzed coupling reactions without isolation of the diazonium intermediate. Heck reactions, Suzuki cross-coupling reactions, and a Pd-catalyzed [2+2+1]cycloaddition have been investigated as terminating CC bond-forming steps of this one-flask sequence. The sequence does not require the exchange of solvents or removal of by-products between the individual steps, but proceeds by addition of reagents and catalysts in due course.}, language = {en} } @article{JbeilySuckertGonnertetal.2013, author = {Jbeily, Nayla and Suckert, Iris and Gonnert, Falk A. and Acht, Benedikt and Bockmeyer, Clemens L. and Grossmann, Sascha D. and Blaess, Markus F. and L{\"u}th, Anja and Deigner, Hans-Peter and Bauer, Michael and Claus, Ralf A.}, title = {Hyperresponsiveness of mice deficient in plasma-secreted sphingomyelinase reveals its pivotal role in early phase of host response}, series = {Journal of lipid research}, volume = {54}, journal = {Journal of lipid research}, number = {2}, publisher = {American Society for Biochemistry and Molecular Biology}, address = {Bethesda}, issn = {0022-2275}, doi = {10.1194/jlr.M031625}, pages = {410 -- 424}, year = {2013}, abstract = {Plasma secretion of acid sphingomyelinase is a hallmark of cellular stress response resulting in the formation of membrane embedded ceramide-enriched lipid rafts and the reorganization of receptor complexes. Consistently, decompartmentalization of ceramide formation from inert sphingomyelin has been associated with signaling events and regulation of the cellular phenotype. Herein, we addressed the question of whether the secretion of acid sphingomyelinase is involved in host response during sepsis. We found an exaggerated clinical course in mice genetically deficient in acid sphingomyelinase characterized by an increased bacterial burden, an increased phagocytotic activity, and a more pronounced cytokine storm. Moreover, on a functional level, leukocyte-endothelial interaction was found diminished in sphingomyelinase-deficient animals corresponding to a distinct leukocytes' phenotype with respect to rolling and sticking as well as expression of cellular surface proteins.(jlr) We conclude that hydrolysis of membrane-embedded sphingomyelin, triggered by circulating sphingomyelinase, plays a pivotal role in the first line of defense against invading microorganisms. This function might be essential during the early phase of infection leading to an adaptive response of remote cells and tissues.-Jbeily, N., I. Suckert, F. A. Gonnert, B. Acht, C. L. Bockmeyer, S. D. Grossmann, M. F. Blaess, A. Lueth, H.-P. Deigner, M. Bauer, and R. A. Claus. Hyperresponsiveness of mice deficient in plasma-secreted sphingomyelinase reveals its pivotal role in early phase of host response. J. Lipid Res. 2013. 54: 410-424.}, language = {en} } @article{GrimmMeyerCzaplaetal.2013, author = {Grimm, Christiane and Meyer, Thomas and Czapla, Sylvia and Nikolaus, J{\"o}rg and Scheidt, Holger A. and Vogel, Alexander and Herrmann, Andreas and Wessig, Pablo and Huster, Daniel and M{\"u}ller, Peter}, title = {Structure and dynamics of molecular rods in membranes application of a Spin-Labeled rod}, series = {Chemistry - a European journal}, volume = {19}, journal = {Chemistry - a European journal}, number = {8}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0947-6539}, doi = {10.1002/chem.201202500}, pages = {2703 -- 2710}, year = {2013}, abstract = {Molecular rods consisting of a hydrophobic backbone and terminally varying functional groups have been synthesized for applications for the functionalization of membranes. In the present study, we employ a spin-labeled analogue of a recently described new class of molecular rods to characterize their dynamic interactions with membranes. By using the different approaches of ESR and NMR spectroscopy, we show that the spin moiety of the membrane-embedded spin-labeled rod is localized in the upper chain/glycerol region of membranes of different compositions. The rod is embedded within the membrane in a tilted orientation to adjust for the varying hydrophobic thicknesses of these bilayers. This orientation does not perturb the membrane structure. The water solubility of the rod is increased significantly in the presence of certain cyclodextrins. These cyclodextrins also allow the rods to be extracted from the membrane and incorporated into preformed membranes. The latter will improve the future applications of these rods in cellular systems as stable membrane-associated anchors for the functionalization of membrane surfaces.}, language = {en} } @article{BeschererMunzkeReichetal.2013, author = {Bescherer, Klaus and Munzke, Dorit and Reich, Oliver and Loock, Hans-Peter}, title = {Fabrication and modeling of multimode fiber lenses}, series = {Applied optics}, volume = {52}, journal = {Applied optics}, number = {4}, publisher = {Optical Society of America}, address = {Washington}, issn = {1559-128X}, doi = {10.1364/AO.52.000B40}, pages = {B40 -- B45}, year = {2013}, abstract = {We report on the fabrication, modeling, and experimental verification of the emission of fiber lenses fabricated on multimode fibers in different media. Concave fiber lenses with a radius of 150 mu m were fabricated onto a multimode silica fiber (100 mu m core) by grinding and polishing against a ruby sphere template. In our theoretical model we assume that the fiber guides light from a Lambertian light source and that the emission cone is governed solely by the range of permitted emission angles. We investigate concave and convex lenses at 532 nm with different radii and in a variety of surrounding media from air (n(0) = 1.00) to sapphire (n(0) = 1.77). It was found that noticeable focusing or defocusing effects of a silica fiber lens in ethanol (n(0) = 1.36) and dimethyl sulfoxide (DMSO) (n(0) = 1.48) are only observed when the fiber lens radius was less than the fiber diameter.}, language = {en} } @article{MilinkovitchKanitzTiedemannetal.2013, author = {Milinkovitch, Michel C. and Kanitz, Ricardo and Tiedemann, Ralph and Tapia, Washington and Llerena, Fausto and Caccone, Adalgisa and Gibbs, James P. and Powell, Jeffrey R.}, title = {Recovery of a nearly extinct Galapagos tortoise despite minimal genetic variation}, series = {Evolutionary applications}, volume = {6}, journal = {Evolutionary applications}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1752-4571}, doi = {10.1111/eva.12014}, pages = {377 -- 383}, year = {2013}, abstract = {A species of Galapagos tortoise endemic to Espanola Island was reduced to just 12 females and three males that have been bred in captivity since 1971 and have produced over 1700 offspring now repatriated to the island. Our molecular genetic analyses of juveniles repatriated to and surviving on the island indicate that none of the tortoises sampled in 1994 had hatched on the island versus 3\% in 2004 and 24\% in 2007, which demonstrates substantial and increasing reproduction in situ once again. This recovery occurred despite the parental population having an estimated effective population size <8 due to a combination of unequal reproductive success of the breeders and nonrandom mating in captivity. These results provide guidelines for adapting breeding regimes in the parental captive population and decreasing inbreeding in the repatriated population. Using simple morphological data scored on the sampled animals, we also show that a strongly heterogeneous distribution of tortoise sizes on Espanola Island observed today is due to a large variance in the number of animals included in yearly repatriation events performed in the last 40years. Our study reveals that, at least in the short run, some endangered species can recover dramatically despite a lack of genetic variation and irregular repatriation efforts.}, language = {en} } @article{vanLoonBaileyTattonetal.2013, author = {van Loon, Jacco Th. and Bailey, M. and Tatton, B. L. and Apellaniz, Jesus Maiz and Crowther, P. A. and de Koter, A. and Evans, C. J. and Henault-Brunet, V. and Howarth, I. D. and Richter, Philipp and Sana, Hugues and Simon D{\´i}az, Sergio and Taylor, W. and Walborn, N. R.}, title = {The VLT-FLAMES tarantula survey IX. - the interstellar medium seen through diffuse interstellar bands and neutral sodium}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {550}, journal = {Astronomy and astrophysics : an international weekly journal}, number = {9}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201220210}, pages = {21}, year = {2013}, abstract = {Context. The Tarantula Nebula (a.k.a. 30 Dor) is a spectacular star-forming region in the Large Magellanic Cloud (LMC), seen through gas in the Galactic disc and halo. Diffuse interstellar bands (DIBs) offer a unique probe of the diffuse, cool-warm gas in these regions. Aims. The aim is to use DIBs as diagnostics of the local interstellar conditions, whilst at the same time deriving properties of the yet-unknown carriers of these enigmatic spectral features. Methods. Spectra of over 800 early-type stars from the Very Large Telescope Flames Tarantula Survey (VFTS) were analysed. Maps were created, separately, for the Galactic and LMC absorption in the DIBs at 4428 and 6614 angstrom and - in a smaller region near the central cluster R 136 - neutral sodium (the Na ID doublet); we also measured the DIBs at 5780 and 5797 angstrom. Results. The maps show strong 4428 and 6614 angstrom DIBs in the quiescent cloud complex to the south of 30 Dor but weak absorption in the harsher environments to the north (bubbles) and near the OB associations. The Na maps show at least five kinematic components in the LMC and a shell-like structure surrounding R 136, and small-scale structure in the Milky Way. The strengths of the 4428, 5780, 5797 and 6614 angstrom DIBs are correlated, also with Na absorption and visual extinction. The strong 4428 angstrom DIB is present already at low Na column density but the 6614, 5780 and 5797 angstrom DIBs start to be detectable at subsequently larger Na column densities. Conclusions. The carriers of the 4428, 6614, 5780 and 5797 angstrom DIBs are increasingly prone to removal from irradiated gas. The relative strength of the 5780 and 5797 angstrom DIBs clearly confirm the Tarantula Nebula as well as Galactic high-latitude gas to represent a harsh radiation environment. The resilience of the 4428 angstrom DIB suggests its carrier is large, compact and neutral. Structure is detected in the distribution of cool-warm gas on scales between one and > 100 pc in the LMC and as little as 0.01 pc in the Sun's vicinity. Stellar winds from the central cluster R 136 have created an expanding shell; some infalling gas is also detected, reminiscent of a galactic "fountain".}, language = {en} } @article{HerenzRichterCharltonetal.2013, author = {Herenz, Peter and Richter, Philipp and Charlton, Jane C. and Masiero, Joseph R.}, title = {The milky way halo as a QSO absorption-line system new results from an HST/STIS absorption-line catalogue of galactic high-velocity clouds}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {550}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201220531}, pages = {23}, year = {2013}, abstract = {We use archival UV absorption-line data from HST/STIS to statistically analyse the absorption characteristics of the high-velocity clouds (HVCs) in the Galactic halo towards more than 40 extragalactic background sources. We determine absorption covering fractions of low-and intermediate ions (Oi, Cii, Si ii, Mgii, Feii, Si iii, Civ, and Si iv) in the range f(c) = 0.20-0.70. For detailed analysis we concentrate on Si ii absorption components in HVCs, for which we investigate the distribution of column densities, b-values, and radial velocities. Combining information for Si ii and Mg II, and using a geometrical HVC model we investigate the contribution of HVCs to the absorption cross section of strong Mg ii absorbers in the local Universe. We estimate that the Galactic HVCs would contribute on average similar to 52 percent to the total strong Mg ii cross section of the Milky Way, if our Galaxy were to be observed from an exterior vantage point. We further estimate that the mean projected covering fraction of strong Mg ii absorption in the Milky Way halo and disc from an exterior vantage point is < f(c,sMgII)> = 0.31 for a halo radius of R = 61 kpc. These numbers, together with the observed number density of strong Mg ii absorbers at low redshift, indicate that the contribution of infalling gas clouds (i.e., HVC analogues) in the halos of Milky Way-type galaxies to the cross section of strong Mgii absorbers is < 34 percent. These findings are in line with the idea that outflowing gas (e. g., produced by galactic winds) in the halos of more actively star-forming galaxies dominate the absorption-cross section of strong Mgii absorbers in the local Universe.}, language = {en} } @article{KeruboMidiwoDereseetal.2013, author = {Kerubo, Leonidah Omosa and Midiwo, Jacob Ogweno and Derese, Solomon and Langat, Moses K. and Akala, Hoseah M. and Waters, Norman C. and Peter, Martin and Heydenreich, Matthias}, title = {Antiplasmodial activity of compounds from the surface exudates of senecio roseiflorus}, series = {Natural product communications : an international journal for communications and reviews}, volume = {8}, journal = {Natural product communications : an international journal for communications and reviews}, number = {2}, publisher = {NPC}, address = {Westerville}, issn = {1934-578X}, pages = {175 -- 176}, year = {2013}, abstract = {From the surface exudates of Senecio roseiflorus fourteen known methylated flavonoids and one phenol were isolated and characterized. The structures of these compounds were determined on the basis of their spectroscopic analysis. The surface exudate and the flavonoids isolated showed moderate to good antiplasmodial activity with 5,4'-dihydroxy-7-dimethoxyflavanone having the highest activity against chloroquine-sensitive (D6) and resistant (W2) strains of Plasmodium falciparum, with IC50 values of 3.2 +/- 0.8 and 4.4 +/- 0.01 mu g/mL respectively.}, language = {en} } @article{DorenkampBonaventuraLeberetal.2013, author = {Dorenkamp, Marc and Bonaventura, Klaus and Leber, Alexander W. and Boldt, Julia and Sohns, Christian and Boldt, Leif-Hendrik and Haverkamp, Wilhelm and Frei, Ulrich and Roser, Mattias}, title = {Potential lifetime cost-effectiveness of catheter-based renal sympathetic denervation in patients with resistant hypertension}, series = {European heart journal}, volume = {34}, journal = {European heart journal}, number = {6}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0195-668X}, doi = {10.1093/eurheartj/ehs355}, pages = {451 -- +}, year = {2013}, abstract = {Aims Recent studies have demonstrated the safety and efficacy of catheter-based renal sympathetic denervation (RDN) for the treatment of resistant hypertension. We aimed to determine the cost-effectiveness of this approach separately for men and women of different ages. Methods and results A Markov state-transition model accounting for costs, life-years, quality-adjusted life-years (QALYs), and incremental cost-effectiveness was developed to compare RDN with best medical therapy (BMT) in patients with resistant hypertension. The model ran from age 30 to 100 years or death, with a cycle length of 1 year. The efficacy of RDN was modelled as a reduction in the risk of hypertension-related disease events and death. Analyses were conducted from a payer's perspective. Costs and QALYs were discounted at 3\% annually. Both deterministic and probabilistic sensitivity analyses were performed. When compared with BMT, RDN gained 0.98 QALYs in men and 0.88 QALYs in women 60 years of age at an additional cost of (sic)2589 and (sic)2044, respectively. As the incremental cost-effectiveness ratios increased with patient age, RDN consistently yielded more QALYs at lower costs in lower age groups. Considering a willingness-to-pay threshold of (sic)35 000/QALY, there was a 95\% probability that RDN would remain cost-effective up to an age of 78 and 76 years in men and women, respectively. Cost-effectiveness was influenced mostly by the magnitude of effect of RDN on systolic blood pressure, the rate of RDN non-responders, and the procedure costs of RDN. Conclusion Renal sympathetic denervation is a cost-effective intervention for patients with resistant hypertension. Earlier treatment produces better cost-effectiveness ratios.}, language = {en} } @article{FechnerBaumannWalz2013, author = {Fechner, Lennart and Baumann, Otto and Walz, Bernd}, title = {Activation of the cyclic AMP pathway promotes serotonin-induced Ca2+ oscillations in salivary glands of the blowfly Calliphora vicina}, series = {Cell calcium}, volume = {53}, journal = {Cell calcium}, number = {2}, publisher = {Churchill Livingstone}, address = {Edinburgh}, issn = {0143-4160}, doi = {10.1016/j.ceca.2012.10.004}, pages = {94 -- 101}, year = {2013}, abstract = {Ca2+ and cAMP signalling pathways interact in a complex manner at multiple sites. This crosstalk fine-tunes the spatiotemporal patterns of Ca2+ and cAMP signals. In salivary glands of the blowfly Calliphora vicina fluid secretion is stimulated by serotonin (5-hydroxytryptamine, 5-HT) via activation of two different 5-HT receptors coupled to the InsP(3)/Ca2+ (Cv5-HT2 alpha) or the cAMP pathway (Cv5-HT7), respectively. We have shown recently in permeabilized gland cells that cAMP sensitizes InsP(3)-induced Ca2+ release to InsP(3). Here we study the effects of the CAMP signalling pathway on 5-HT-induced oscillations in transepithelial potential (TEP) and in intracellular [Ca2+]. We show: (1) Blocking the activation of the cAMP pathway by cinanserin suppresses the generation of TEP and Ca2+ oscillations, (2) application of 8-CPT-cAMP in the presence of cinanserin restores 5-HT-induced TEP and Ca2+ oscillations, (3) 8-CPT-cAMP sensitizes the InsP(3)/Ca2+ signalling pathway to 5-HT and the Cv5-HT2 alpha, receptor agonist 5-MeOT, (4) 8-CPT-cAMP induces Ca2+ oscillations in cells loaded with subthreshold concentrations of InsP(3), (5) inhibition of protein kinase A by H-89 abolishes 5-HT-induced TEP and Ca2+ spiking and mimics the effect of cinanserin. These results suggest that activation of the cyclic AMP pathway promotes the generation of 5-HT-induced Ca2+ oscillations in blowfly salivary glands.}, language = {en} } @article{FrankCzepluchSticheretal.2013, author = {Frank, Ulrike and Czepluch, C. and Sticher, H. and Maetzener, F. and Schlaegel, W. and M{\"a}der, M.}, title = {Modifiziertes Trachealkan{\"u}lenmanagement - Platzhaltereinsatz als Option bei erschwerten Dekan{\"u}lierungen (Pilotprojekt REHAB Basel)}, series = {Die Rehabilitation : Zeitschrift f{\"u}r Praxis und Forschung in der Rehabilitation}, volume = {52}, journal = {Die Rehabilitation : Zeitschrift f{\"u}r Praxis und Forschung in der Rehabilitation}, number = {1}, publisher = {Thieme}, address = {Stuttgart}, issn = {0034-3536}, doi = {10.1055/s-0032-1306290}, pages = {20 -- 26}, year = {2013}, abstract = {Tracheotomierte Patienten, die sowohl eine Dysphagie als auch respiratorische Defizite aufweisen, haben nach der Dekan{\"u}lierung h{\"a}ufig Probleme, sich an die translaryngeale Atmung anzupassen. Wir entwickelten ein Dekan{\"u}lierungsprotokoll f{\"u}r diese Patientengruppe, das optional in unser bestehendes Trachealkan{\"u}lenmanagement integriert werden kann. Erf{\"u}llt ein Patient die hierf{\"u}r definierten Kriterien, so erfolgt unter laryngoskopischer Kontrolle die Einlage eines Platzhalters, der bis zu 3 Tage in situ verbleibt. W{\"a}hrend dieser Probedekan{\"u}lierungsphase werden die respiratorischen Funktionen und das Speichelmanagement engmaschig {\"u}berwacht. Auf der Grundlage dieser Evaluation wird dann die Entscheidung f{\"u}r oder gegen eine endg{\"u}ltige Dekan{\"u}lierung getroffen. Wir stellen den Ablauf, die Kriterienkataloge und die Evaluationsparameter f{\"u}r diese Probedekan{\"u}lierungsphase vor und illustrieren den Ablauf anhand von 2 Fallbeispielen.}, language = {de} } @article{SobelChenSchoenbohmetal.2013, author = {Sobel, Edward and Chen, Jie and Schoenbohm, Lindsay M. and Thiede, Rasmus Christoph and Stockli, Daniel F. and Sudo, Masafumi and Strecker, Manfred}, title = {Oceanic-style subduction controls late Cenozoic deformation of the Northern Pamir orogen}, series = {Earth \& planetary science letters}, volume = {363}, journal = {Earth \& planetary science letters}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0012-821X}, doi = {10.1016/j.epsl.2012.12.009}, pages = {204 -- 218}, year = {2013}, abstract = {The northern part of the Pamir orogen is the preeminent example of an active intracontinental subduction zone in the early stages of continent-continent collision. Such zones are the least understood type of plate boundaries because modern examples are few and of limited access, and ancient analogs have been extensively overprinted by subsequent tectonic and erosion processes. In the Pamir, it has been assumed that most of the plate convergence was accommodated by overthrusting along the plate-bounding Main Pamir Thrust (MPT), which forms the principal northern mountain and deformation front of the Pamir. However, the synopsis of our new and previously published thermochronologic data from this region shows that the hanging wall of the MPT experienced relatively minor amounts of late Cenozoic exhumation. The Pamir orogen as a whole is an integral part of the overriding plate in a subduction system, while the remnant basin to the north constitutes the downgoing plate, with the bulk of the convergence accommodated by underthrusting. Herein, we demonstrate that the observed deformation of the upper and lower plates within the Pamir-Alai convergence zone resembles highly arcuate oceanic subduction systems characterized by slab rollback, subduction erosion, subduction accretion, and marginal slab-tear faults. We suggest that the curvature of the North Pamir is genetically linked to the short width and rollback of the south-dipping Alai slab; northward motion (indentation) of the Pamir is accommodated by crustal processes related to this rollback. The onset of south-dipping subduction is tentatively linked to intense Pamir contraction following break-off of the north-dipping Indian slab beneath the Karakoram.}, language = {en} } @article{KnapmeyerEndrunKruegerLegendreetal.2013, author = {Knapmeyer-Endrun, Brigitte and Kr{\"u}ger, Frank and Legendre, C. P. and Geissler, Wolfram H.}, title = {Tracing the influence of the trans-european suture zone into the mantle transition zone}, series = {Earth \& planetary science letters}, volume = {363}, journal = {Earth \& planetary science letters}, publisher = {Elsevier}, address = {Amsterdam}, organization = {PASSEQ Working Grp}, issn = {0012-821X}, doi = {10.1016/j.epsl.2012.12.028}, pages = {73 -- 87}, year = {2013}, abstract = {Cratons with their thick lithospheric roots can influence the thermal structure, and thus the convective flow, in the surrounding mantle. As mantle temperatures are hard to measure directly, depth variations in the mantle transition zone (MTZ) discontinuities are often employed as a proxy. Here, we use a large new data set of P-receiver functions to map the 410 km and 660 km discontinuities beneath the western edge of the East European Craton and adjacent Phanerozoic Europe across the most fundamental lithospheric boundary in Europe, the Trans-European Suture Zone (TESZ). We observe significantly shorter travel times for conversions from both MTZ discontinuities within the craton, caused by the high velocities of the cratonic root. By contrast, the differential travel time across the MTZ is normal to only slightly raised. This implies that any insulating effect of the cratonic keel does not reach the MTZ. In contrast to earlier observations in Siberia, we do not find any trace of a discontinuity at 520 km depth, which indicates a rather dry MTZ beneath the western edge of the craton. Within most of covered Phanerozoic Europe, the MTZ differential travel time is remarkably uniform and in agreement with standard Earth models. No widespread thermal effects of the various episodes of Caledonian and Variscan subduction that took place during the amalgamation of the continent remain. Only more recent tectonic events, related to Alpine subduction and Quarternary volcanism in the Eifel area, can be traced. While the East European craton shows no distinct imprint into the MTZ, we discover the signature of the TESZ in the MTZ in the form of a linear region of about 350 km width with a 1.5 s increase in differential travel time, which could either be caused by high water content or decreased temperature. Taking into account results of recent S-wave tomographies, raised water content in the MTZ cannot be the main cause for this observation. Accordingly, we explain the increase, equivalent to a 15 km thicker MTZ, by a temperature decrease of about 80 K. We discuss two alternative models for this temperature reduction, either a remnant of subduction or an indication of downwelling due to small-scale, edge-driven convection caused by the contrast in lithospheric thickness across the TESZ. Any subducted lithosphere found in the MTZ at this location is unlikely to be related to Variscan subduction along the TESZ, though, as Eurasia has moved significantly northward since the Variscan orogeny.}, language = {en} } @article{GlaeserBolteMartinetal.2013, author = {Gl{\"a}ser, Stefanie P. and Bolte, Kathrin and Martin, Karin and Busse, Hans-J{\"u}rgen and Grossart, Hans-Peter and K{\"a}mpfer, Peter and Gl{\"a}ser, Jens}, title = {Novosphingobium fuchskuhlense sp nov., isolated from the north-east basin of Lake Grosse Fuchskuhle}, series = {International journal of systematic and evolutionary microbiology}, volume = {63}, journal = {International journal of systematic and evolutionary microbiology}, publisher = {Society for General Microbiology}, address = {Reading}, issn = {1466-5026}, doi = {10.1099/ijs.0.043083-0}, pages = {586 -- 592}, year = {2013}, abstract = {A yellow pigmented, Gram-negative, rod-shaped bacterium designated FNE08-7(T) was isolated from subsurface water of the north-east basin of the bog lake Grosse Fuchskuhle (Brandenburg, Germany). A first analysis of the nearly full-length 16S rRNA gene sequence analysis including environmental 16S rRNA gene sequences derived from freshwater ecosystems showed that strain FNE08-7(T) is the first cultured representative, to our knowledge, of the freshwater tribe Novo-A2. Further analysis indicates highest 16S rRNA gene sequence similarities to the type strains of Novosphingobium stygium (98.0\%) and Novosphingobium taihuense (97.4\%) and between 94.0\% and 96.9\% sequence similarity to other members of the genus Novosphingobium. Reconstruction of phylogenetic trees showed that strain FNE08-7(T) formed a distinct cluster with the type strains of N. stygium and N. taihuense supported by high bootstrap values. DNA DNA hybridization of strain FNE08-7(T) with N. stygium SMCC B0712(T) and N. taihuense DSM 17507(T) revealed low similarity values of 18.4\% (reciprocal: 11.4\%) and 23.1\% (reciprocal: 54.2\%), respectively. The predominant fatty acid of the isolate is C-18:1 omega 7c (56.4\%) and two characteristic 2-hydroxy fatty acids, C-14:0 2-OH (16.5\%) and C-15:0 2-OH (3.3\%) occur. Ubiquinone Q-10 is the major respiratory quinone. The predominant polar lipids are phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, sphingoglycolipid, phosphatidylcholine and minor amounts of diphosphatidylglycerol. Spermidine is the predominant polyamine. Characterization by genotypic, chemotaxonomic and phenotypic analysis indicate that strain FNE08-7(T) represents a novel species of the genus Novosphingobium within the Alphaproteobacteria. Therefore, we propose the species Novosphingobium fuchskuhlense sp. nov., with FNE08-7(T) (=DSM 25065(T)=CCM 7978(T)=CCUG 61508(T)) as the type strain.}, language = {en} } @article{IgnaceOskinovaMassa2013, author = {Ignace, Richard and Oskinova, Lida and Massa, D.}, title = {A report on the X-ray properties of the tau Sco-like stars}, series = {Monthly notices of the Royal Astronomical Society}, volume = {429}, journal = {Monthly notices of the Royal Astronomical Society}, number = {1}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0035-8711}, doi = {10.1093/mnras/sts358}, pages = {516 -- 522}, year = {2013}, abstract = {An increasing number of OB stars have been shown to possess magnetic fields. Although the sample remains small, it is surprising that the magnetic and X-ray properties of these stars appear to be far less correlated than expected. This contradicts model predictions, which generally indicate that the X-rays from magnetic stars are harder and more luminous than their non-magnetic counterparts. Instead, the X-ray properties of magnetic OB stars are quite diverse. tau Sco is one example where the expectations are better met. This bright main-sequence, early B star has been studied extensively in a variety of wavebands. It has a surface magnetic field of around 500 G, and Zeeman Doppler tomography has revealed an unusual field configuration. Furthermore, tau Sco displays an unusually hard X-ray spectrum, much harder than similar, non-magnetic OB stars. In addition, the profiles of its UV P Cygni wind lines have long been known to possess a peculiar morphology. Recently, two stars, HD 66665 and HD 63425, whose spectral types and UV wind line profiles are similar to those of tau Sco, have also been determined to be magnetic. In the hope of establishing a magnetic field - X-ray connection for at least a subset of the magnetic stars, we obtained XMM-Newton European Photon Imaging Camera spectra of these two objects. Our results for HD 66665 are somewhat inconclusive. No especially strong hard component is detected; however, the number of source counts is insufficient to rule out hard emission. Longer exposure is needed to assess the nature of the X-rays from this star. On the other hand, we do find that HD 63425 has a substantial hard X-ray component, thereby bolstering its close similarity to tau Sco.}, language = {en} } @article{SteinertCassouHirschfeld2013, author = {Steinert, Bastian and Cassou, Damien and Hirschfeld, Robert}, title = {CoExist overcoming aversion to change preserving immediate access to source code and run-time information of previous development states}, series = {ACM SIGPLAN notices}, volume = {48}, journal = {ACM SIGPLAN notices}, number = {2}, publisher = {Association for Computing Machinery}, address = {New York}, issn = {0362-1340}, doi = {10.1145/2480360.2384591}, pages = {107 -- 117}, year = {2013}, abstract = {Programmers make many changes to the program to eventually find a good solution for a given task. In this course of change, every intermediate development state can of value, when, for example, a promising ideas suddenly turn out inappropriate or the interplay of objects turns out more complex than initially expected before making changes. Programmers would benefit from tool support that provides immediate access to source code and run-time of previous development states of interest. We present IDE extensions, implemented for Squeak/Smalltalk, to preserve, retrieve, and work with this information. With such tool support, programmers can work without worries because they can rely on tools that help them with whatever their explorations will reveal. They no longer have to follow certain best practices only to avoid undesired consequences of changing code.}, language = {en} } @article{MeibomBarnesCoveyetal.2013, author = {Meibom, S. and Barnes, Sydney A. and Covey, K. and Jeffries, R. D. and Matt, S. and Morin, J. and Palacios, A. and Reiners, A. and Sicilia-Aguilar, A. and Irwin, J.}, title = {Angular momentum evolution of cool stars: Toward a synthesis of observations and theory before and after the ZAMS}, series = {Astronomische Nachrichten = Astronomical notes}, volume = {334}, journal = {Astronomische Nachrichten = Astronomical notes}, number = {1-2}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0004-6337}, doi = {10.1002/asna.201211777}, pages = {168 -- 171}, year = {2013}, abstract = {The coexistence of fast and slowly rotating cool stars in ZAMS clusters - forming distinct sequences in the color vs. rotation period plane - is providing clues to differences in their pre main-sequence angular momentum evolution. This Cool Stars 17 splinter was dedicated to a discussion of new observational and theoretical results that may help discriminate between proposed mechanisms for early angular momentum regulation and help us explain the observed ZAMS dichotomy.}, language = {en} } @article{RolfsDambacherCavanagh2013, author = {Rolfs, Martin and Dambacher, Michael and Cavanagh, Patrick}, title = {Visual adaptation of the perception of causality}, series = {Current biology}, volume = {23}, journal = {Current biology}, number = {3}, publisher = {Cell Press}, address = {Cambridge}, issn = {0960-9822}, doi = {10.1016/j.cub.2012.12.017}, pages = {250 -- 254}, year = {2013}, abstract = {We easily recover the causal properties of visual events, enabling us to understand and predict changes in the physical world. We see a tennis racket hitting a ball and sense that it caused the ball to fly over the net; we may also have an eerie but equally compelling experience of causality if the streetlights turn on just as we slam our car's door. Both perceptual [1] and cognitive [2] processes have been proposed to explain these spontaneous inferences, but without decisive evidence one way or the other, the question remains wide open [3-8]. Here, we address this long-standing debate using visual adaptation-a powerful tool to uncover neural populations that specialize in the analysis of specific visual features [9-12]. After prolonged viewing of causal collision events called "launches" [1], subsequently viewed events were judged more often as noncausal. These negative aftereffects of exposure to collisions are spatially localized in retinotopic coordinates, the reference frame shared by the retina and visual cortex. They are not explained by adaptation to other stimulus features and reveal visual routines in retinotopic cortex that detect and adapt to cause and effect in simple collision stimuli.}, language = {en} } @article{KleinpeterKoch2013, author = {Kleinpeter, Erich and Koch, Andreas}, title = {(Anti)aromaticity of dehydroannulenes of various ring size proved by the ring current effect in H-1 NMR spectra}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {5}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2012.12.019}, pages = {1481 -- 1488}, year = {2013}, abstract = {The spatial magnetic properties (Through-Space NMR Shieldings-TSNMRS) of already synthesized dehydro[n]annulenes of various ring size (from C-12 to C-20) have been computed, visualized as Isochemical Shielding Surfaces (ICSS) of various size and direction, and were examined subject to present (anti)aromaticity. For this purpose the thus quantified ring current effect of the macro cycles on proximate protons in proton NMR spectra was employed.}, language = {en} } @article{HoffmannJaiserHayeretal.2013, author = {Hoffmann, Sebastian T. and Jaiser, Frank and Hayer, Anna and Baessler, Heinz and Unger, Thomas and Athanasopoulos, Stavros and Neher, Dieter and Koehler, Anna}, title = {How Do Disorder, Reorganization, and Localization Influence the Hole Mobility in Conjugated Copolymers?}, series = {JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, volume = {135}, journal = {JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, number = {5}, publisher = {AMER CHEMICAL SOC}, address = {WASHINGTON}, issn = {0002-7863}, doi = {10.1021/ja308820j}, pages = {1772 -- 1782}, year = {2013}, abstract = {In order to unravel the intricate interplay between disorder effects, molecular reorganization, and charge carrier localization, a comprehensive study was conducted on hole transport in a series of conjugated alternating phenanthrene indenofluorene copolymers. Each polymer in the series contained one further comonomer comprising monoamines, diamines, or amine-free structures, whose influence on the electronic, optical, and charge transport properties was studied. The series covered a wide range of highest occupied molecular orbital (HOMO) energies as determined by cyclovoltammetry. The mobility, inferred from time-of-flight (ToF) experiments as a function of temperature and electric field, was found to depend exponentially on the HOMO energy. Since possible origins for this effect include energetic disorder, polaronic effects, and wave function localization, the relevant parameters were determined using a range of methods. Disorder and molecular reorganization were established first by an analysis of absorption and emission measurements and second by an analysis of the ToF measurements. In addition, density functional theory calculations were carried out to determine how localized or delocalized holes on a polymer chain are and to compare calculated reorganization energies with those that have been inferred from optical spectra. In summary, we conclude that molecular reorganization has little effect on the hole mobility in this system while both disorder effects and hole localization in systems with low-lying HOMOs are predominant. In particular, as the energetic disorder is comparable for the copolymers, the absolute value of the hole mobility at room temperature is determined by the hole localization associated with the triarylamine moieties.}, language = {en} } @article{BroedelRaymondDumanetal.2013, author = {Broedel, A. K. and Raymond, J. A. and Duman, J. G. and Bier, Frank Fabian and Kubick, Stefan}, title = {Functional evaluation of candidate ice structuring proteins using cell-free expression systems}, series = {JOURNAL OF BIOTECHNOLOGY}, volume = {163}, journal = {JOURNAL OF BIOTECHNOLOGY}, number = {3}, publisher = {ELSEVIER SCIENCE BV}, address = {AMSTERDAM}, issn = {0168-1656}, doi = {10.1016/j.jbiotec.2012.11.001}, pages = {301 -- 310}, year = {2013}, abstract = {Ice structuring proteins (ISPs) protect organisms from damage or death by freezing. They depress the non-equilibrium freezing point of water and prevent recrystallization, probably by binding to the surface of ice crystals. Many ISPs have been described and it is likely that many more exist in nature that have not yet been identified. ISPs come in many forms and thus cannot be reliably identified by their structure or consensus ice-binding motifs. Recombinant protein expression is the gold standard for proving the activity of a candidate ISP. Among existing expression systems, cell-free protein expression is the simplest and gives the fastest access to the protein of interest, but selection of the appropriate cell-free expression system is crucial for functionality. Here we describe cell-free expression methods for three ISPs that differ widely in structure and glycosylation status from three organisms: a fish (Macrozoarces americanus), an insect (Dendroides canadensis) and an alga (Chlamydomonas sp. CCMP681). We use both prokaryotic and eukaryotic expression systems for the production of ISPs. An ice recrystallization inhibition assay is used to test functionality. The techniques described here should improve the success of cell-free expression of ISPs in future applications. (C) 2012 Elsevier B.V. All rights reserved.}, language = {en} } @article{AliuArchambaultArlenetal.2013, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Dwarkadas, Vikram V. and Errando, M. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Godambe, S. and Gotthelf, E. V. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Hughes, G. and Humensky, T. B. and Kaaret, P. and Kargaltsev, O. and Karlsson, N. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Lee, K. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O\&rsquo and Faolain, and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, M. and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Roberts, M. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Slane, P. and Smith, A. W. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Vincent, S. and Vivier, M. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B.}, title = {DISCOVERY OF TeV GAMMA-RAY EMISSION FROM CTA 1 BY VERITAS}, series = {ASTROPHYSICAL JOURNAL}, volume = {764}, journal = {ASTROPHYSICAL JOURNAL}, number = {1}, publisher = {IOP PUBLISHING LTD}, address = {BRISTOL}, issn = {0004-637X}, doi = {10.1088/0004-637X/764/1/38}, pages = {9}, year = {2013}, abstract = {We report the discovery of TeV gamma-ray emission coincident with the shell-type radio supernova remnant (SNR) CTA 1 using the VERITAS gamma-ray observatory. The source, VER J0006+729, was detected as a 6.5 standard deviation excess over background and shows an extended morphology, approximated by a two-dimensional Gaussian of semimajor (semiminor) axis 0.degrees 30 (0.degrees 24) and a centroid 5\’ from the Fermi gamma-ray pulsar PSR J0007+7303 and its X-ray pulsar wind nebula (PWN). The photon spectrum is well described by a power-law dN/dE = N-0(E/3 TeV)(-Gamma), with a differential spectral index of Gamma = 2.2 +/- 0.2(stat) +/- 0.3(sys), and normalization N-0 = (9.1 +/- 1.3(stat) +/- 1.7(sys)) x 10(-14) cm(-2) s(-1) TeV-1. The integral flux, F-gamma = 4.0 x 10(-12) erg cm(-2) s(-1) above 1 TeV, corresponds to 0.2\% of the pulsar spin-down power at 1.4 kpc. The energetics, colocation with the SNR, and the relatively small extent of the TeV emission strongly argue for the PWN origin of the TeV photons. We consider the origin of the TeV emission in CTA 1.}, language = {en} } @article{MeliAuclercPalmqvistetal.2013, author = {Meli, Mattia and Auclerc, Apolline and Palmqvist, Annemette and Forbes, Valery E. and Grimm, Volker}, title = {Population-level consequences of spatially heterogeneous exposure to heavy metals in soil an individual-based model of springtails}, series = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, volume = {250}, journal = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-3800}, doi = {10.1016/j.ecolmodel.2012.11.010}, pages = {338 -- 351}, year = {2013}, abstract = {Contamination of soil with toxic heavy metals poses a major threat to the environment and human health. Anthropogenic sources include smelting of ores, municipal wastes, fertilizers, and pesticides. In assessing soil quality and the environmental and ecological risk of contamination with heavy metals, often homogeneous contamination of the soil is assumed. However, soils are very heterogeneous environments. Consequently, both contamination and the response of soil organisms can be assumed to be heterogeneous. This might have consequences for the exposure of soil organisms and for the extrapolation of risk from the individual to the population level. Therefore, to explore how soil contamination of different spatial heterogeneity affects population dynamics of soil invertebrates, we developed a spatially explicit individual-based model of the springtail, Folsomia candida, a standard test species for ecotoxicological risk assessment. In the model, individuals were assumed to sense and avoid contaminated habitat with a certain probability that depends on contamination level. Avoidance of contaminated areas thus influenced the individuals' movement and feeding, their exposure, and in turn all other biological processes underlying population dynamics. Model rules and parameters were based on data from the literature, or were determined via pattern-oriented modelling. The model correctly predicted several patterns that were not used for model design and calibration. Simulation results showed that the ability of the individuals to detect and avoid the toxicant, combined with the presence of clean habitat patches which act as "refuges", made equilibrium population size due to toxic effects less sensitive to increases in toxicant concentration. Additionally, the level of heterogeneity among patches of soil (i.e. the difference in concentration) was important: at the same average concentration, a homogeneously contaminated scenario was the least favourable habitat, while higher levels of heterogeneity corresponded to higher population growth rate and equilibrium size. Our model can thus be used as a tool for extrapolating from short-term effects at the individual level to long-term effects at the population level under more realistic conditions. It can thus be used to develop and extrapolate from standard ecotoxicological tests in the laboratory to ecological risk assessments.}, language = {en} } @article{BhabakKleuserHuwileretal.2013, author = {Bhabak, Krishna P. and Kleuser, Burkhard and Huwiler, Andrea and Arenz, Christoph}, title = {Effective inhibition of acid and neutral ceramidases by novel B-13 and LCL-464 analogues}, series = {Bioorganic \& medicinal chemistry : a Tetrahedron publication for the rapid dissemination of full original research papers and critical reviews on biomolecular chemistry, medicinal chemistry and related disciplines}, volume = {21}, journal = {Bioorganic \& medicinal chemistry : a Tetrahedron publication for the rapid dissemination of full original research papers and critical reviews on biomolecular chemistry, medicinal chemistry and related disciplines}, number = {4}, publisher = {Elsevier}, address = {Oxford}, issn = {0968-0896}, doi = {10.1016/j.bmc.2012.12.014}, pages = {874 -- 882}, year = {2013}, abstract = {Induction of apoptosis mediated by the inhibition of ceramidases has been shown to enhance the efficacy of conventional chemotherapy in several cancer models. Among the inhibitors of ceramidases reported in the literature, B-13 is considered as a lead compound having good in vitro potency towards acid ceramidase. Furthermore, owing to the poor activity of B-13 on lysosoamal acid ceramidase in living cells, LCL-464 a modified derivative of B-13 containing a basic omega-amino group at the fatty acid was reported to have higher potency towards lysosomal acid ceramidase in living cells. In a search for more potent inhibitors of ceramidases, we have designed a series of compounds with structural modifications of B-13 and LCL-464. In this study, we show that the efficacy of B-13 in vitro as well as in intact cells can be enhanced by suitable modification of functional groups. Furthermore, a detailed SAR investigation on LCL-464 analogues revealed novel promising inhibitors of aCDase and nCDase. In cell culture studies using the breast cancer cell line MDA-MB-231, some of the newly developed compounds elevated endogenous ceramide levels and in parallel, also induced apoptotic cell death. In summary, this study shows that structural modification of the known ceramidase inhibitors B-13 and LCL-464 generates more potent ceramidase inhibitors that are active in intact cells and not only elevates the cellular ceramide levels, but also enhances cell death.}, language = {en} } @article{PieplowHenkel2013, author = {Pieplow, Gregor and Henkel, Carsten}, title = {Fully covariant radiation force on a polarizable particle}, series = {New journal of physics : the open-access journal for physics}, volume = {15}, journal = {New journal of physics : the open-access journal for physics}, number = {4}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1367-2630}, doi = {10.1088/1367-2630/15/2/023027}, pages = {17}, year = {2013}, abstract = {The electromagnetic force on a polarizable particle is calculated in a covariant framework. Local equilibrium temperatures for the electromagnetic field and the particle's dipole moment are assumed, using a relativistic formulation of the fluctuation-dissipation theorem. Two examples illustrate radiative friction forces: a particle moving through a homogeneous radiation background and above a planar interface. Previous results for arbitrary relative velocities are recovered in a compact way.}, language = {en} } @article{SirockoDietrichVeresetal.2013, author = {Sirocko, Frank and Dietrich, Stephan and Veres, Daniel and Grootes, Pieter M. and Schaber-Mohr, Katja and Seelos, Klemens and Nadeau, Marie-Josee and Kromer, Bernd and Rothacker, Leo and Roehner, Marieke and Krbetschek, Matthias and Appleby, Peter G. and Hambach, Ulrich and Rolf, Christian and Sudo, Masafumi and Grim, Stephanie}, title = {Multi-proxy dating of Holocene maar lakes and Pleistocene dry maar sediments in the Eifel, Germany}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {62}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2012.09.011}, pages = {56 -- 76}, year = {2013}, abstract = {During the last twelve years the ELSA Project (Eifel Laminated Sediment Archive) at Mainz University has drilled a total of about 52 cores from 27 maar lakes and filled-in maar basins in the Eifel/Germany. Dating has been completed for the Holocene cores using 6 different methods (Pb-210 and Cs-137 activities, palynostratigraphy, event markers, varve counting, C-14) In general, the different methods consistently complement one another within error margins. Event correlation was used for relating typical lithological changes with historically known events such as the two major Holocene flood events at 1342 AD and ca 800 BC. Dating of MIS2-MIS3 core sections is based on greyscale tuning, radiocarbon and OSL dating, magnetostratigraphy and tephrochronology. The lithological changes in the sediment cores demonstrate a sequence of events similar to the North Atlantic rapid climate variability of the Last Glacial Cycle. The warmest of the MIS3 interstadials was GI14, when a forest with abundant spruce covered the Eifel area from 55 to 48 ka BP, i.e. during a time when also other climate archives in Europe suggested very warm conditions. The forest of this "Early Stage 3 warm phase" developed subsequently into a steppe with scattered birch and pine, and finally into a glacial desert at around 25 ka BP. Evidence for Mono Lake and Laschamp geomagnetic excursions is found in two long cores. Several large eruptions during Middle and Late Pleistocene (Ulmener Maar - 11,000 varve years BP, Laacher See - 12,900 varve years BP, Mosenberg volcanoes/Meerfelder Maar 41-45 cal ka BP, Dumpel Maar 116 ka BP, Glees Maar - 151 ka BP) produced distinct ash-layers crucial for inter-core and inter-site correlations. The oldest investigated maar of the Eifel is Ar-40/Ar-39 dated to the time older than 520 ka BP.}, language = {en} } @article{GorumvanWestenKorupetal.2013, author = {Gorum, Tolga and van Westen, Cees J. and Korup, Oliver and van der Meijde, Mark and Fan, Xuanmei and van der Meer, Freek D.}, title = {Complex rupture mechanism and topography control symmetry of mass-wasting pattern, 2010 Haiti earthquake}, series = {GEOMORPHOLOGY}, volume = {184}, journal = {GEOMORPHOLOGY}, publisher = {ELSEVIER SCIENCE BV}, address = {AMSTERDAM}, issn = {0169-555X}, doi = {10.1016/j.geomorph.2012.11.027}, pages = {127 -- 138}, year = {2013}, abstract = {The 12 January 2010 M-w 7.0 Haiti earthquake occurred in a complex deformation zone at the boundary between the North American and Caribbean plates. Combined geodetic, geological and seismological data posited that surface deformation was driven by rupture on the Leogane blind thrust fault, while part of the rupture occurred as deep lateral slip on the Enriquillo-Plantain Garden Fault (EPGF). The earthquake triggered >4490 landslides, mainly shallow, disrupted rock falls, debris-soil falls and slides, and a few lateral spreads, over an area of similar to 2150 km(2). The regional distribution of these slope failures defies those of most similar earthquake-triggered landslide episodes reported previously. Most of the coseismic landslides did not proliferate in the hanging wall of the main rupture, but clustered instead at the junction of the blind Leogane and EPGF ruptures, where topographic relief and hillslope steepness are above average. Also, low-relief areas subjected to high coseismic uplift were prone to lesser hanging wall slope instability than previous studies would suggest. We argue that a combined effect of complex rupture dynamics and topography primarily control this previously rarely documented landslide pattern. Compared to recent thrust fault-earthquakes of similar magnitudes elsewhere, we conclude that lower static stress drop, mean fault displacement, and blind ruptures of the 2010 Haiti earthquake resulted in fewer, smaller, and more symmetrically distributed landslides than previous studies would suggest. Our findings caution against overly relying on across-the-board models of slope stability response to seismic ground shaking. (C) 2012 Elsevier B.V. All rights reserved.}, language = {en} } @article{MirskovaAdamovichMirskovetal.2013, author = {Mirskova, Anna N. and Adamovich, Sergey N. and Mirskov, Rudolf G. and Schilde, Uwe}, title = {Reaction of pharmacological active tris-(2-hydroxyethyl)ammonium 4-chlorophenylsulfanylacetate with ZnCl2 or NiCl2: first conversion of a protic ionic liquid into metallated ionic liquid}, series = {CHEMISTRY CENTRAL JOURNAL}, volume = {7}, journal = {CHEMISTRY CENTRAL JOURNAL}, publisher = {BIOMED CENTRAL LTD}, address = {LONDON}, issn = {1752-153X}, doi = {10.1186/1752-153X-7-34}, pages = {5}, year = {2013}, abstract = {The reaction of pharmacological active protic ionic liquid tris-(2-hydroxyethyl)ammonium 4-chlorophenylsulfanylacetate H+N(CH2CH2OH)(3) center dot (-OOCCH2SC6H4Cl-4) (1) with zinc or nickel chloride in a ratio of 2:1 affords stable at room temperature powder-like adducts [H+N(CH2CH2OH)(3)](2) center dot [M(OOCCH2SC6H4Cl-4)(2)Cl-2](2-), M = Zn (2), Ni (3). By recrystallization from aqueous alcohol compound 2 unexpectedly gives Zn(OOCCH2SC6H4Cl-4)(2) center dot 2H(2)O (4). Unlike 2, compound 3 gives crystals [N(CH2CH2OH)(3)](2)Ni2+ center dot [-OOCCH2SC6H4Cl-4](2) (5), which have a structure of metallated ionic liquid. The structure of 5 has been proved by X-ray diffraction analysis. It is the first example of the conversion of a protic ionic liquid into potentially biological active metallated ionic liquid (1 -> 3 -> 5).}, language = {en} } @article{DahlRadonBuehningetal.2013, author = {Dahl, Jan-Ulrik and Radon, Christin and B{\"u}hning, Martin and Nimtz, Manfred and Leichert, Lars I. and Denis, Yann and Jourlin-Castelli, Cecile and Iobbi-Nivol, Chantal and Mejean, Vincent and Leimk{\"u}hler, Silke}, title = {The Sulfur Carrier Protein TusA Has a Pleiotropic Role in Escherichia coli That Also Affects Molybdenum Cofactor Biosynthesis}, series = {JOURNAL OF BIOLOGICAL CHEMISTRY}, volume = {288}, journal = {JOURNAL OF BIOLOGICAL CHEMISTRY}, number = {8}, publisher = {AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC}, address = {BETHESDA}, issn = {0021-9258}, doi = {10.1074/jbc.M112.431569}, pages = {5426 -- 5442}, year = {2013}, abstract = {The Escherichia coli L-cysteine desulfurase IscS mobilizes sulfur from L-cysteine for the synthesis of several biomolecules such as iron-sulfur (FeS) clusters, molybdopterin, thiamin, lipoic acid, biotin, and the thiolation of tRNAs. The sulfur transfer from IscS to various biomolecules is mediated by different interaction partners (e.g. TusA for thiomodification of tRNAs, IscU for FeS cluster biogenesis, and ThiI for thiamine biosynthesis/tRNA thiolation), which bind at different sites of IscS. Transcriptomic and proteomic studies of a Delta tusA strain showed that the expression of genes of the moaABCDE operon coding for proteins involved in molybdenum cofactor biosynthesis is increased under aerobic and anaerobic conditions. Additionally, under anaerobic conditions the expression of genes encoding hydrogenase 3 and several molybdoenzymes such as nitrate reductase were also increased. On the contrary, the activity of all molydoenzymes analyzed was significantly reduced in the Delta tusA mutant. Characterization of the Delta tusA strain under aerobic conditions showed an overall low molybdopterin content and an accumulation of cyclic pyranopterin monophosphate. Under anaerobic conditions the activity of nitrate reductase was reduced by only 50\%, showing that TusA is not essential for molybdenum cofactor biosynthesis. We present a model in which we propose that the direction of sulfur transfer for each sulfur-containing biomolecule is regulated by the availability of the interaction partner of IscS. We propose that in the absence of TusA, more IscS is available for FeS cluster biosynthesis and that the overproduction of FeS clusters leads to a modified expression of several genes.}, language = {en} } @article{InalKoelschChiappisietal.2013, author = {Inal, Sahika and Koelsch, Jonas D. and Chiappisi, Leonardo and Kraft, Mario and Gutacker, Andrea and Janietz, Dietmar and Scherf, Ullrich and Gradzielski, Michael and Laschewsky, Andr{\´e} and Neher, Dieter}, title = {Temperature-Regulated Fluorescence Characteristics of Supramolecular Assemblies Formed By a Smart Polymer and a Conjugated Polyelectrolyte}, series = {MACROMOLECULAR CHEMISTRY AND PHYSICS}, volume = {214}, journal = {MACROMOLECULAR CHEMISTRY AND PHYSICS}, number = {4}, publisher = {WILEY-V C H VERLAG GMBH}, address = {WEINHEIM}, issn = {1022-1352}, doi = {10.1002/macp.201200493}, pages = {435 -- 445}, year = {2013}, abstract = {Aqueous mixtures of a coumarin-labeled non-ionic thermoresponsive copolymer and a cationic polythiophene exhibit marked changes in their fluorescence properties upon heating. At room temperature, emission from the label is significantly quenched due to energy transfer to the conjugated polyelectrolyte. Heating the mixture reduces the energy-transfer efficiency markedly, resulting in a clearly visible change of the emission color. Although the two macromolecules associate strongly at room temperature, the number of interacting sites is largely reduced upon the phase transition. Crucially, the intermolecular association does not suppress the responsiveness of the smart polymer, meaning that this concept should be applicable to chemo- or bioresponsive polymers with optical read-out, for example, as a sensor device.}, language = {en} } @article{WinklerKofodKrastevetal.2013, author = {Winkler, M. and Kofod, G. and Krastev, R. and Stoeckle, S. and Abel, M. W.}, title = {Exponentially Fast Thinning of Nanoscale Films by Turbulent Mixing}, series = {PHYSICAL REVIEW LETTERS}, volume = {110}, journal = {PHYSICAL REVIEW LETTERS}, number = {9}, publisher = {AMER PHYSICAL SOC}, address = {COLLEGE PK}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.094501}, pages = {5}, year = {2013}, abstract = {Films are nanoscopic elements of foams, emulsions, and suspensions that form a paradigm for nanochannel transport that eventually tests the limits of hydrodynamic descriptions. Here, we study the collapse of a freestanding film to its equilibrium. The generation of nanoscale films usually is a slow linear process; using thermal forcing we find unprecedented dynamics with exponentially fast thinning. The complex interplay of thermal convection, interface, and gravitational forces yields optimal turbulent mixing and transport. Domains of collapsed film are generated, elongated, and convected in a beautiful display of chaotic mixing. With a time scale analysis, we identify mixing as the dominant dynamical process responsible for exponential thinning. DOI: 10.1103/PhysRevLett.110.094501}, language = {en} } @article{SchickBojahrHerzogetal.2013, author = {Schick, Daniel and Bojahr, Andre and Herzog, Marc and Gaal, P. and Vrejoiu, I. and Bargheer, Matias}, title = {Following Strain-Induced Mosaicity Changes of Ferroelectric Thin Films by Ultrafast Reciprocal Space Mapping}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {9}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.095502}, pages = {5}, year = {2013}, abstract = {We investigate coherent phonon propagation in a thin film of ferroelectric PbZr0.2Ti0.8O3 (PZT) by ultrafast x-ray diffraction experiments, which are analyzed as time-resolved reciprocal space mapping in order to observe the in-and out-of-plane structural dynamics, simultaneously. The mosaic structure of the PZT leads to a coupling of the excited out-of-plane expansion to in-plane lattice dynamics on a picosecond time scale, which is not observed for out-of-plane compression.}, language = {en} } @article{EliazarMetzler2013, author = {Eliazar, Iddo and Metzler, Ralf}, title = {Anomalous statistics of random relaxations in random environments}, series = {Physical review : E, Statistical, nonlinear and soft matter physics}, volume = {87}, journal = {Physical review : E, Statistical, nonlinear and soft matter physics}, number = {2}, publisher = {American Physical Society}, address = {College Park}, issn = {1539-3755}, doi = {10.1103/PhysRevE.87.022141}, pages = {12}, year = {2013}, abstract = {We comprehensively analyze the emergence of anomalous statistics in the context of the random relaxation ( RARE) model [Eliazar and Metzler, J. Chem. Phys. 137, 234106 ( 2012)], a recently introduced versatile model of random relaxations in random environments. The RARE model considers excitations scattered randomly across a metric space around a reaction center. The excitations react randomly with the center, the reaction rates depending on the excitations' distances from this center. Relaxation occurs upon the first reaction between an excitation and the center. Addressing both the relaxation time and the relaxation range, we explore when these random variables display anomalous statistics, namely, heavy tails at zero and at infinity that manifest, respectively, exceptionally high occurrence probabilities of very small and very large outliers. A cohesive set of closed-form analytic results is established, determining precisely when such anomalous statistics emerge.}, language = {en} } @article{FeudelSeehaferTuckermanetal.2013, author = {Feudel, Fred and Seehafer, Norbert and Tuckerman, Laurette S. and Gellert, Marcus}, title = {Multistability in rotating spherical shell convection}, series = {Physical review : E, Statistical, nonlinear and soft matter physics}, volume = {87}, journal = {Physical review : E, Statistical, nonlinear and soft matter physics}, number = {2}, publisher = {American Physical Society}, address = {College Park}, issn = {1539-3755}, doi = {10.1103/PhysRevE.87.023021}, pages = {8}, year = {2013}, abstract = {The multiplicity of stable convection patterns in a rotating spherical fluid shell heated from the inner boundary and driven by a central gravity field is presented. These solution branches that arise as rotating waves (RWs) are traced for varying Rayleigh number while their symmetry, stability, and bifurcations are studied. At increased Rayleigh numbers all the RWs undergo transitions to modulated rotating waves (MRWs) which are classified by their spatiotemporal symmetry. The generation of a third frequency for some of the MRWs is accompanied by a further loss of symmetry. Eventually a variety of MRWs, three-frequency solutions, and chaotic saddles and attractors control the dynamics for higher Rayleigh numbers.}, language = {en} } @article{LinBergerGrimmetal.2013, author = {Lin, Yue and Berger, Uta and Grimm, Volker and Huth, Franka and Weiner, Jacob}, title = {Plant interactions alter the predictions of metabolic scaling theory}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {2}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0057612}, pages = {6}, year = {2013}, abstract = {Metabolic scaling theory (MST) is an attempt to link physiological processes of individual organisms with macroecology. It predicts a power law relationship with an exponent of -4/3 between mean individual biomass and density during density-dependent mortality (self-thinning). Empirical tests have produced variable results, and the validity of MST is intensely debated. MST focuses on organisms' internal physiological mechanisms but we hypothesize that ecological interactions can be more important in determining plant mass-density relationships induced by density. We employ an individual-based model of plant stand development that includes three elements: a model of individual plant growth based on MST, different modes of local competition (size-symmetric vs. -asymmetric), and different resource levels. Our model is consistent with the observed variation in the slopes of self-thinning trajectories. Slopes were significantly shallower than -4/3 if competition was size-symmetric. We conclude that when the size of survivors is influenced by strong ecological interactions, these can override predictions of MST, whereas when surviving plants are less affected by interactions, individual-level metabolic processes can scale up to the population level. MST, like thermodynamics or biomechanics, sets limits within which organisms can live and function, but there may be stronger limits determined by ecological interactions. In such cases MST will not be predictive.}, language = {en} } @article{BauerSommerGaedke2013, author = {Bauer, Barbara and Sommer, Ulrich and Gaedke, Ursula}, title = {High predictability of spring phytoplankton biomass in mesocosms at the species, functional group and community level}, series = {Freshwater biology}, volume = {58}, journal = {Freshwater biology}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0046-5070}, doi = {10.1111/j.1365-2427.2012.02780.x}, pages = {588 -- 596}, year = {2013}, abstract = {1. Models aim to predict phytoplankton dynamics based on observed initial conditions and a set of equations and parameters. However, our knowledge about initial conditions in nature is never perfect. Thus, if phytoplankton dynamics are sensitive to small variations in initial conditions, they are difficult to predict. 2. We used time-series data from indoor mesocosm experiments with natural phyto- and zooplankton communities to quantify the extent to which small initial differences in the species, functional group and community biomass in parallel treatments were amplified or buffered over time. We compared the differences in dynamics between replicates and among all mesocosms of 1year. 3. Temperature-sensitive grazing during the exponential growth phase of phytoplankton caused divergence. In contrast, negative density dependence caused convergence. 4. Mean differences in biomass between replicates were similar for all hierarchical levels. This indicates that differences in their initial conditions were amplified to the same extent. Even though large differences in biomass occasionally occurred between replicates for a short time, dynamics returned to the same path at all hierarchical levels. This suggests that internal feedback mechanisms make the spring development of phytoplankton highly predictable.}, language = {en} } @article{ZakharovaNikoloskiKoseska2013, author = {Zakharova, A. and Nikoloski, Zoran and Koseska, Aneta}, title = {Dimensionality reduction of bistable biological systems}, series = {Bulletin of mathematical biology : official journal of the Society for Mathematical Biology}, volume = {75}, journal = {Bulletin of mathematical biology : official journal of the Society for Mathematical Biology}, number = {3}, publisher = {Springer}, address = {New York}, issn = {0092-8240}, doi = {10.1007/s11538-013-9807-8}, pages = {373 -- 392}, year = {2013}, abstract = {Time hierarchies, arising as a result of interactions between system's components, represent a ubiquitous property of dynamical biological systems. In addition, biological systems have been attributed switch-like properties modulating the response to various stimuli across different organisms and environmental conditions. Therefore, establishing the interplay between these features of system dynamics renders itself a challenging question of practical interest in biology. Existing methods are suitable for systems with one stable steady state employed as a well-defined reference. In such systems, the characterization of the time hierarchies has already been used for determining the components that contribute to the dynamics of biological systems. However, the application of these methods to bistable nonlinear systems is impeded due to their inherent dependence on the reference state, which in this case is no longer unique. Here, we extend the applicability of the reference-state analysis by proposing, analyzing, and applying a novel method, which allows investigation of the time hierarchies in systems exhibiting bistability. The proposed method is in turn used in identifying the components, other than reactions, which determine the systemic dynamical properties. We demonstrate that in biological systems of varying levels of complexity and spanning different biological levels, the method can be effectively employed for model simplification while ensuring preservation of qualitative dynamical properties (i.e., bistability). Finally, by establishing a connection between techniques from nonlinear dynamics and multivariate statistics, the proposed approach provides the basis for extending reference-based analysis to bistable systems.}, language = {en} } @article{OskinovaSunEvansetal.2013, author = {Oskinova, Lida and Sun, W. and Evans, C. J. and Henault-Brunet, V. and Chu, Y.-H. and Gallagher, J. S. and Guerrero, Mart{\´i}n A. and Gruendl, R. A. and G{\"u}del, M. and Silich, S. and Chen, Y. and Naze, Y. and Hainich, Rainer and Reyes-Iturbide, J.}, title = {Discovery of x-ray emission from young suns in the small magellanic cloud}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {765}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/765/1/73}, pages = {12}, year = {2013}, abstract = {We report the discovery of extended X-ray emission within the young star cluster NGC 602a in the Wing of the Small Magellanic Cloud (SMC) based on observations obtained with the Chandra X-Ray Observatory. X-ray emission is detected from the cluster core area with the highest stellar density and from a dusty ridge surrounding the H II region. We use a census of massive stars in the cluster to demonstrate that a cluster wind or wind-blown bubble is unlikely to provide a significant contribution to the X-ray emission detected from the central area of the cluster. We therefore suggest that X-ray emission at the cluster core originates from an ensemble of low-and solar-mass pre-main-sequence (PMS) stars, each of which would be too weak in X-rays to be detected individually. We attribute the X-ray emission from the dusty ridge to the embedded tight cluster of the newborn stars known in this area from infrared studies. Assuming that the levels of X-ray activity in young stars in the low-metallicity environment of NGC 602a are comparable to their Galactic counterparts, then the detected spatial distribution, spectral properties, and level of X-ray emission are largely consistent with those expected from low-and solar-mass PMS stars and young stellar objects (YSOs). This is the first discovery of X-ray emission attributable to PMS stars and YSOs in the SMC, which suggests that the accretion and dynamo processes in young, low-mass objects in the SMC resemble those in the Galaxy.}, language = {en} } @article{Kroll2013, author = {Kroll, Alexander}, title = {The other type of performance information - nonroutine feedback, its relevance and use}, series = {Public administration review}, volume = {73}, journal = {Public administration review}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0033-3352}, doi = {10.1111/j.1540-6210.2012.02648.x}, pages = {265 -- 276}, year = {2013}, abstract = {The literature on performance information use explains how public managers deal with mainly quantitative data that are systematically collected and formally reported. This article argues that such a narrow understanding is incomplete, as it excludes all kinds of nonroutine performance information, including verbal, ad hoc, and qualitative feedback. To understand how responsive public managers are to performance feedback, alternative sources of performance information need to be taken into account. A literature review suggests considering two important sources of nonroutine feedback: organizational insiders and relevant external stakeholders. Using survey data from German local government, this article shows that public managers prefer to use nonroutine feedback over routine data from performance reports. Furthermore, a regression analysis indicates that different sources of performance information require different determinants to trigger their use. This finding is essential because it suggests that explanations of performance information use can covary with the information source studied.}, language = {en} } @article{SpeckRaeuberKuekenshoeneretal.2013, author = {Speck, Janina and R{\"a}uber, Christina and K{\"u}kensh{\"o}ner, Tim and Niem{\"o}ller, Christoph and Mueller, Katelyn J. and Schleberger, Paula and Dondapati, Padmarupa and Hecky, Jochen and Arndt, Katja Maren and M{\"u}ller, Kristian M.}, title = {TAT hitchhiker selection expanded to folding helpers, multimeric interactions and combinations with protein fragment complementation}, series = {Protein engineering design \& selection}, volume = {26}, journal = {Protein engineering design \& selection}, number = {3}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1741-0126}, doi = {10.1093/protein/gzs098}, pages = {225 -- 242}, year = {2013}, abstract = {The twin-arginine translocation (TAT) pathway of the bacterial cytoplasmic membrane mediates translocation only of proteins that accomplished a native-like conformation. We deploy this feature in modular selection systems for directed evolution, in which folding helpers as well as dimeric or oligomeric proteinprotein interactions enable TAT-dependent translocation of the resistance marker TEM -lactamase (L). Specifically, we demonstrate and analyze selection of (i) enhancers for folding by direct TAT translocation selection of a target protein interposed between the TorA signal sequence and L, (ii) dimeric or oligomeric proteinprotein interactions by hitchhiker translocation (HiT) selection of proteins fused to the TorA signal sequence and to the L, respectively and (iii) heterotrimeric proteinprotein interactions by combining HiT with protein fragment complementation selection of proteins fused to two split L fragments and TorA, respectively. The lactamase fragments were additionally engineered for improved activity and stability. Applicability was benchmarked with interaction partners of known affinity and multimerization whereby cellular fitness correlated well with biophysical protein properties. Ultimately, the HiT selection was employed to identify peptides, which specifically bind to leukemia- and melanoma-relevant target proteins (MITF and ETO) by coiled-coil or tetra-helix-bundle formation with high affinity. The various versions of TAT selection led to inhibiting peptides (iPEPs) of disease-promoting interactions and enabled so far difficult to achieve selections.}, language = {en} } @article{HoffmannSeissSpahn2013, author = {Hoffmann, H. and Seiß, Martin and Spahn, Frank}, title = {Vertical relaxation of a moonlet propeller in Saturn's a ring}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, volume = {765}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2041-8205}, doi = {10.1088/2041-8205/765/1/L4}, pages = {3}, year = {2013}, abstract = {Two images, taken by the Cassini spacecraft near Saturn's equinox in 2009 August, show the Earhart propeller casting a 350 km long shadow, offering the opportunity to watch how the ring height, excited by the propeller moonlet, relaxes to an equilibrium state. From the shape of the shadow cast and a model of the azimuthal propeller height relaxation, we determine the exponential cooling constant of this process to be lambda = 0.07 +/- 0.02 km(-1), and thereby determine the collision frequency of the ring particles in the vertically excited region of the propeller to be omega(c)/Omega = 0.9 +/- 0.2.}, language = {en} } @article{LinklaterMayerSwaisgood2013, author = {Linklater, Wayne L. and Mayer, Katharina and Swaisgood, Ronald R.}, title = {Chemical signals of age, sex and identity in black rhinoceros}, series = {Animal behaviour}, volume = {85}, journal = {Animal behaviour}, number = {3}, publisher = {Elsevier}, address = {London}, issn = {0003-3472}, doi = {10.1016/j.anbehav.2012.12.034}, pages = {671 -- 677}, year = {2013}, abstract = {Olfactory communication may be particularly important to black rhinoceros, Diceros bicornis, because they are solitary living and have comparatively poor eyesight but their populations are structured by inter-and intrasexual relationships. Understanding olfactory functions and processes might achieve better conservation management but their study in rhinoceros remains anecdotal or descriptive. Experimental approaches are required but rarely possible as rhinoceros are difficult to observe and manipulate. We measured the olfactory investigation behaviour (duration and frequency of sniffing) of black rhinoceros in four experiments designed to determine the function of chemosignals in dung and urine. A habituationedishabituation trial demonstrated that black rhinoceros discriminated individually distinctive odours from faecal signals (experiment 1). When adults (>6 years old) were presented with dung from conspecifics of different sex and age classes (adult, and subadult from 2 to 4 years old), male dung was investigated more by both sexes, and females investigated subadult dung more (experiment 2). Both dung and urine from the same adult donors were investigated by both sexes, but male dung was investigated more than female dung and female urine more than male urine, although differences were statistically weak (experiment 3). Lastly, fresh faecal samples and those aged 1, 2, 4, 16 and 32 days were similarly investigated, indicating that they still function as olfactory signals. Together the results indicate that dung or urine signalled age, sex and identity to conspecifics and signals may persist as dung decays. Chemosignals are likely to be important to the social and spatial organization of black rhinoceros.}, language = {en} } @article{KlieglHohensteinYanetal.2013, author = {Kliegl, Reinhold and Hohenstein, Sven and Yan, Ming and McDonald, Scott A.}, title = {How preview space/time translates into preview cost/benefit for fixation durations during reading}, series = {The quarterly journal of experimental psychology}, volume = {66}, journal = {The quarterly journal of experimental psychology}, number = {3}, publisher = {Wiley}, address = {Hove}, issn = {1747-0218}, doi = {10.1080/17470218.2012.658073}, pages = {581 -- 600}, year = {2013}, abstract = {Eye-movement control during reading depends on foveal and parafoveal information. If the parafoveal preview of the next word is suppressed, reading is less efficient. A linear mixed model (LMM) reanalysis of McDonald (2006) confirmed his observation that preview benefit may be limited to parafoveal words that have been selected as the saccade target. Going beyond the original analyses, in the same LMM, we examined how the preview effect (i.e., the difference in single-fixation duration, SFD, between random-letter and identical preview) depends on the gaze duration on the pretarget word and on the amplitude of the saccade moving the eye onto the target word. There were two key results: (a) The shorter the saccade amplitude (i.e., the larger preview space), the shorter a subsequent SFD with an identical preview; this association was not observed with a random-letter preview. (b) However, the longer the gaze duration on the pretarget word, the longer the subsequent SFD on the target, with the difference between random-letter string and identical previews increasing with preview time. A third patternincreasing cost of a random-letter string in the parafovea associated with shorter saccade amplitudeswas observed for target gaze durations. Thus, LMMs revealed that preview effects, which are typically summarized under preview benefit, are a complex mixture of preview cost and preview benefit and vary with preview space and preview time. The consequence for reading is that parafoveal preview may not only facilitate, but also interfere with lexical access.}, language = {en} } @article{WotschackKliegl2013, author = {Wotschack, Christiane and Kliegl, Reinhold}, title = {Reading strategy modulates parafoveal-on-foveal effects in sentence reading}, series = {The quarterly journal of experimental psychology}, volume = {66}, journal = {The quarterly journal of experimental psychology}, number = {3}, publisher = {Wiley}, address = {Hove}, issn = {1747-0218}, doi = {10.1080/17470218.2011.625094}, pages = {548 -- 562}, year = {2013}, abstract = {Task demands and individual differences have been linked reliably to word skipping during reading. Such differences in fixation probability may imply a selection effect for multivariate analyses of eye-movement corpora if selection effects correlate with word properties of skipped words. For example, with fewer fixations on short and highly frequent words the power to detect parafoveal-on-foveal effects is reduced. We demonstrate that increasing the fixation probability on function words with a manipulation of the expected difficulty and frequency of questions reduces an age difference in skipping probability (i.e., old adults become comparable to young adults) and helps to uncover significant parafoveal-on-foveal effects in this group of old adults. We discuss implications for the comparison of results of eye-movement research based on multivariate analysis of corpus data with those from display-contingent manipulations of target words.}, language = {en} } @article{GhahghaeiLinnellFischeretal.2013, author = {Ghahghaei, Saeideh and Linnell, Karina J. and Fischer, Martin H. and Dubey, Amit and Davis, Robert}, title = {Effects of load on the time course of attentional engagement, disengagement, and orienting in reading}, series = {The quarterly journal of experimental psychology}, volume = {66}, journal = {The quarterly journal of experimental psychology}, number = {3}, publisher = {Wiley}, address = {Hove}, issn = {1747-0218}, doi = {10.1080/17470218.2011.635795}, pages = {453 -- 470}, year = {2013}, abstract = {We examined how the frequency of the fixated word influences the spatiotemporal distribution of covert attention during reading. Participants discriminated gaze-contingent probes that occurred with different spatial and temporal offsets from randomly chosen fixation points during reading. We found that attention was initially focused at fixation and that subsequent defocusing was slower when the fixated word was lower in frequency. Later in a fixation, attention oriented more towards the next saccadic target for high- than for low-frequency words. These results constitute the first report of the time course of the effect of load on attentional engagement and orienting in reading. They are discussed in the context of serial and parallel models of reading.}, language = {en} } @article{MuehlbauerGollhoferGranacher2013, author = {M{\"u}hlbauer, Thomas and Gollhofer, Albert and Granacher, Urs}, title = {Association of balance, strength, and power measures in young adults}, series = {Journal of strength and conditioning research : the research journal of the NSCA}, volume = {27}, journal = {Journal of strength and conditioning research : the research journal of the NSCA}, number = {3}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {1064-8011}, doi = {10.1097/JSC.0b013e31825c2bab}, pages = {582 -- 589}, year = {2013}, abstract = {Muehlbauer, T, Gollhofer, A, and Granacher, U. Association of balance, strength, and power measures in young adults. J Strength Cond Res 27(3): 582-589, 2013-The purpose of this study was to investigate the relationship between variables of static/dynamic balance, isometric strength, and power. Twenty-seven young healthy adults (mean age: 23 6 4 years) performed measurements of static (unperturbed)/dynamic (perturbed) balance, isometric strength (i.e., maximal isometric torque [MIT]; rate of torque development [RTD] of the plantar flexor), and power (i.e., countermovement jump [CMJ] height and power). No significant associations were found between variables of static and dynamic balance (r = -0.090 to + 0.329, p > 0.05) and between measures of static/dynamic balance and isometric strength (r = +0.041 to +0.387, p > 0.05) and static/dynamic balance and power (r = -0.076 to + 0.218, p > 0.05). Significant positive correlations (r) were detected between variables of power and isometric strength ranging from +0.458 to +0.689 (p, 0.05). Furthermore, simple regression analyses revealed that a 10\% increase in mean CMJ height (4.1 cm) was associated with 22.9 N.m and 128.4 N.m.s(-1) better MIT and RTD, respectively. The nonsignificant correlation between static and dynamic balance measures and between static/dynamic balance, isometric strength, and power variables implies that these capacities may be independent of each other and may have to be tested and trained complementarily.}, language = {en} }