@misc{EppKruseKathetal.2018, author = {Epp, Laura Saskia and Kruse, Stefan and Kath, Nadja J. and Stoof-Leichsenring, Kathleen Rosemarie and Tiedemann, Ralph and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1052}, issn = {1866-8372}, doi = {10.25932/publishup-46835}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-468352}, pages = {11}, year = {2018}, abstract = {Changes in species' distributions are classically projected based on their climate envelopes. For Siberian forests, which have a tremendous significance for vegetation-climate feedbacks, this implies future shifts of each of the forest-forming larch (Larix) species to the north-east. However, in addition to abiotic factors, reliable projections must assess the role of historical biogeography and biotic interactions. Here, we use sedimentary ancient DNA and individual-based modelling to investigate the distribution of larch species and mitochondrial haplotypes through space and time across the treeline ecotone on the southern Taymyr peninsula, which at the same time presents a boundary area of two larch species. We find spatial and temporal patterns, which suggest that forest density is the most influential driver determining the precise distribution of species and mitochondrial haplotypes. This suggests a strong influence of competition on the species' range shifts. These findings imply possible climate change outcomes that are directly opposed to projections based purely on climate envelopes. Investigations of such fine-scale processes of biodiversity change through time are possible using paleoenvironmental DNA, which is available much more readily than visible fossils and can provide information at a level of resolution that is not reached in classical palaeoecology.}, language = {en} } @misc{GoodwinMuddClubb2018, author = {Goodwin, Guillaume C. H. and Mudd, Simon M. and Clubb, Fiona J.}, title = {Unsupervised detection of salt marsh platforms}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {936}, issn = {1866-8372}, doi = {10.25932/publishup-45932}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-459329}, pages = {239 -- 255}, year = {2018}, abstract = {Salt marshes filter pollutants, protect coastlines against storm surges, and sequester carbon, yet are under threat from sea level rise and anthropogenic modification. The sustained existence of the salt marsh ecosystem depends on the topographic evolution of marsh platforms. Quantifying marsh platform topography is vital for improving the management of these valuable landscapes. The determination of platform boundaries currently relies on supervised classification methods requiring near-infrared data to detect vegetation, or demands labour-intensive field surveys and digitisation. We propose a novel, unsupervised method to reproducibly isolate salt marsh scarps and platforms from a digital elevation model (DEM), referred to as Topographic Identification of Platforms (TIP). Field observations and numerical models show that salt marshes mature into subhorizontal platforms delineated by subvertical scarps. Based on this premise, we identify scarps as lines of local maxima on a slope raster, then fill landmasses from the scarps upward, thus isolating mature marsh platforms. We test the TIP method using lidar-derived DEMs from six salt marshes in England with varying tidal ranges and geometries, for which topographic platforms were manually isolated from tidal flats. Agreement between manual and unsupervised classification exceeds 94\% for DEM resolutions of 1 m, with all but one site maintaining an accuracy superior to 90\% for resolutions up to 3 m. For resolutions of 1 m, platforms detected with the TIP method are comparable in surface area to digitised platforms and have similar elevation distributions. We also find that our method allows for the accurate detection of local block failures as small as 3 times the DEM resolution. Detailed inspection reveals that although tidal creeks were digitised as part of the marsh platform, unsupervised classification categorises them as part of the tidal flat, causing an increase in false negatives and overall platform perimeter. This suggests our method may benefit from combination with existing creek detection algorithms. Fallen blocks and high tidal flat portions, associated with potential pioneer zones, can also lead to differences between our method and supervised mapping. Although pioneer zones prove difficult to classify using a topographic method, we suggest that these transition areas should be considered when analysing erosion and accretion processes, particularly in the case of incipient marsh platforms. Ultimately, we have shown that unsupervised classification of marsh platforms from high-resolution topography is possible and sufficient to monitor and analyse topographic evolution.}, language = {en} } @misc{KruseGerdesKathetal.2018, author = {Kruse, Stefan and Gerdes, Alexander and Kath, Nadja J. and Herzschuh, Ulrike}, title = {Implementing spatially explicit wind-driven seed and pollen dispersal in the individual-based larch simulation model}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {929}, issn = {1866-8372}, doi = {10.25932/publishup-44597}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-445978}, pages = {4451 -- 4467}, year = {2018}, abstract = {It is of major interest to estimate the feedback of arctic ecosystems to the global warming we expect in upcoming decades. The speed of this response is driven by the potential of species to migrate, tracking their climate optimum. For this, sessile plants have to produce and disperse seeds to newly available habitats, and pollination of ovules is needed for the seeds to be viable. These two processes are also the vectors that pass genetic information through a population. A restricted exchange among subpopulations might lead to a maladapted population due to diversity losses. Hence, a realistic implementation of these dispersal processes into a simulation model would allow an assessment of the importance of diversity for the migration of plant species in various environments worldwide. To date, dynamic global vegetation models have been optimized for a global application and overestimate the migration of biome shifts in currently warming temperatures. We hypothesize that this is caused by neglecting important fine-scale processes, which are necessary to estimate realistic vegetation trajectories. Recently, we built and parameterized a simulation model LAVESI for larches that dominate the latitudinal treelines in the northernmost areas of Siberia. In this study, we updated the vegetation model by including seed and pollen dispersal driven by wind speed and direction. The seed dispersal is modelled as a ballistic flight, and for the pollination of ovules of seeds produced, we implemented a wind-determined and distance-dependent probability distribution function using a von Mises distribution to select the pollen donor. A local sensitivity analysis of both processes supported the robustness of the model's results to the parameterization, although it highlighted the importance of recruitment and seed dispersal traits for migration rates. This individual-based and spatially explicit implementation of both dispersal processes makes it easily feasible to inherit plant traits and genetic information to assess the impact of migration processes on the genetics. Finally, we suggest how the final model can be applied to substantially help in unveiling the important drivers of migration dynamics and, with this, guide the improvement of recent global vegetation models.}, language = {en} } @phdthesis{Beamish2019, author = {Beamish, Alison Leslie}, title = {Hyperspectral remote sensing of the spatial and temporal heterogeneity of low Arctic vegetation}, doi = {10.25932/publishup-42592}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-425922}, school = {Universit{\"a}t Potsdam}, pages = {v, 102}, year = {2019}, abstract = {Arctic tundra ecosystems are experiencing warming twice the global average and Arctic vegetation is responding in complex and heterogeneous ways. Shifting productivity, growth, species composition, and phenology at local and regional scales have implications for ecosystem functioning as well as the global carbon and energy balance. Optical remote sensing is an effective tool for monitoring ecosystem functioning in this remote biome. However, limited field-based spectral characterization of the spatial and temporal heterogeneity limits the accuracy of quantitative optical remote sensing at landscape scales. To address this research gap and support current and future satellite missions, three central research questions were posed: • Does canopy-level spectral variability differ between dominant low Arctic vegetation communities and does this variability change between major phenological phases? • How does canopy-level vegetation colour images recorded with high and low spectral resolution devices relate to phenological changes in leaf-level photosynthetic pigment concentrations? • How does spatial aggregation of high spectral resolution data from the ground to satellite scale influence low Arctic tundra vegetation signatures and thereby what is the potential of upcoming hyperspectral spaceborne systems for low Arctic vegetation characterization? To answer these questions a unique and detailed database was assembled. Field-based canopy-level spectral reflectance measurements, nadir digital photographs, and photosynthetic pigment concentrations of dominant low Arctic vegetation communities were acquired at three major phenological phases representing early, peak and late season. Data were collected in 2015 and 2016 in the Toolik Lake Research Natural Area located in north central Alaska on the North Slope of the Brooks Range. In addition to field data an aerial AISA hyperspectral image was acquired in the late season of 2016. Simulations of broadband Sentinel-2 and hyperspectral Environmental and Mapping Analysis Program (EnMAP) satellite reflectance spectra from ground-based reflectance spectra as well as simulations of EnMAP imagery from aerial hyperspectral imagery were also obtained. Results showed that canopy-level spectral variability within and between vegetation communities differed by phenological phase. The late season was identified as the most discriminative for identifying many dominant vegetation communities using both ground-based and simulated hyperspectral reflectance spectra. This was due to an overall reduction in spectral variability and comparable or greater differences in spectral reflectance between vegetation communities in the visible near infrared spectrum. Red, green, and blue (RGB) indices extracted from nadir digital photographs and pigment-driven vegetation indices extracted from ground-based spectral measurements showed strong significant relationships. RGB indices also showed moderate relationships with chlorophyll and carotenoid pigment concentrations. The observed relationships with the broadband RGB channels of the digital camera indicate that vegetation colour strongly influences the response of pigment-driven spectral indices and digital cameras can track the seasonal development and degradation of photosynthetic pigments. Spatial aggregation of hyperspectral data from the ground to airborne, to simulated satel-lite scale was influenced by non-photosynthetic components as demonstrated by the distinct shift of the red edge to shorter wavelengths. Correspondence between spectral reflectance at the three scales was highest in the red spectrum and lowest in the near infra-red. By artificially mixing litter spectra at different proportions to ground-based spectra, correspondence with aerial and satellite spectra increased. Greater proportions of litter were required to achieve correspondence at the satellite scale. Overall this thesis found that integrating multiple temporal, spectral, and spatial data is necessary to monitor the complexity and heterogeneity of Arctic tundra ecosystems. The identification of spectrally similar vegetation communities can be optimized using non-peak season hyperspectral data leading to more detailed identification of vegetation communities. The results also highlight the power of vegetation colour to link ground-based and satellite data. Finally, a detailed characterization non-photosynthetic ecosystem components is crucial for accurate interpretation of vegetation signals at landscape scales.}, language = {en} } @misc{RodilJaramilloHubbardetal.2015, author = {Rodil, Iv{\´a}n F. and Jaramillo, Eduardo and Hubbard, David M. and Dugan, Jenifer E. and Melnick, Daniel and Velasquez, Carlos}, title = {Responses of dune plant communities to continental uplift from a major earthquake}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {516}, issn = {1866-8372}, doi = {10.25932/publishup-40962}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409629}, pages = {18}, year = {2015}, abstract = {Vegetated dunes are recognized as important natural barriers that shelter inland ecosystems and coastlines suffering daily erosive impacts of the sea and extreme events, such as tsunamis. However, societal responses to erosion and shoreline retreat often result in man-made coastal defence structures that cover part of the intertidal and upper shore zones causing coastal squeeze and habitat loss, especially for upper shore biota, such as dune plants. Coseismic uplift of up to 2.0 m on the Peninsula de Arauco (South central Chile, ca. 37.5 degrees S) caused by the 2010 Maule earthquake drastically modified the coastal landscape, including major increases in the width of uplifted beaches and the immediate conversion of mid to low sandy intertidal habitat to supralittoral sandy habitat above the reach of average tides and waves. To investigate the early stage responses in species richness, cover and across-shore distribution of the hitherto absent dune plants, we surveyed two formerly intertidal armoured sites and a nearby intertidal unarmoured site on a sandy beach located on the uplifted coast of Llico (Peninsula de Arauco) over two years. Almost 2 years after the 2010 earthquake, dune plants began to recruit, then rapidly grew and produced dune hummocks in the new upper beach habitats created by uplift at the three sites. Initial vegetation responses were very similar among sites. However, over the course of the study, the emerging vegetated dunes of the armoured sites suffered a slowdown in the development of the spatial distribution process, and remained impoverished in species richness and cover compared to the unarmoured site. Our results suggest that when released from the effects of coastal squeeze, vegetated dunes can recover without restoration actions. However, subsequent human activities and management of newly created beach and dune habitats can significantly alter the trajectory of vegetated dune development. Management that integrates the effects of natural and human induced disturbances, and promotes the development of dune vegetation as natural barriers can provide societal and conservation benefits in coastal ecosystems.}, language = {en} } @misc{NiemeyerHerzschuhPestryakova2015, author = {Niemeyer, Bastian and Herzschuh, Ulrike and Pestryakova, Luidmila Agafyevna}, title = {Vegetation and lake changes on the southern Taymyr peninsula, northern Siberia, during the last 300 years inferred from pollen and Pediastrum green algae records}, series = {The Holocene}, volume = {25}, journal = {The Holocene}, number = {4}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-404882}, pages = {11}, year = {2015}, abstract = {Siberian arctic vegetation and lake water communities, known for their temperature dependence, are expected to be particularly impacted by recent climate change and high warming rates. However, decadal information on the nature and strength of recent vegetation change and its time lag to climate signals are rare. In this study, we present a Pb-210/Cs-137 dated pollen and Pediastrum species record from a unnamed lake in the south of the Taymyr peninsula covering the period from AD 1706 to 2011. Thirty-nine palynomorphs and 10 morphotypes of Pediastrum species were studied to assess changes in vegetation and lake conditions as probable responses to climate change. We compared the pollen record with Pediastrum species, which we consider to be important proxies of climate changes. Three pollen assemblage zones characterised by Betula nana, Alnus viridis and Larix gmelinii (1706-1808); herbs such as Cyperaceae, Artemisia or Senecio (1808-1879), and higher abundance of Larix pollen (1955-2011) are visible. Also, three Pediastrum assemblage zones show changes of aquatic conditions: higher abundances of Pediastrum boryanum var. brevicorne (1706-1802); medium abundances of P. kawraiskyi and P. integrum (1802-1840 and 1920-1980), indicating cooler conditions while less eutrophic conditions are indicated by P. boryanum, and a mainly balanced composition with only small changes of cold- and warm-adapted Pediastrum species (1965-2011). In general, compositional Pediastrum species turnover is slightly higher than that indicated by pollen data (0.54 vs 0.34 SD), but both are only minor for this treeline location. In conclusion, the relevance of differentiation of Pediastrum species is promising and can give further insights into the relationship between lakes and their surrounding vegetation transferred onto climatic conditions.}, language = {en} } @phdthesis{Siegmund2018, author = {Siegmund, Jonatan Frederik}, title = {Quantifying impacts of climate extreme events on vegetation}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407095}, school = {Universit{\"a}t Potsdam}, pages = {129}, year = {2018}, abstract = {Together with the gradual change of mean values, ongoing climate change is projected to increase frequency and amplitude of temperature and precipitation extremes in many regions of Europe. The impacts of such in most cases short term extraordinary climate situations on terrestrial ecosystems are a matter of central interest of recent climate change research, because it can not per se be assumed that known dependencies between climate variables and ecosystems are linearly scalable. So far, yet, there is a high demand for a method to quantify such impacts in terms of simultaneities of event time series. In the course of this manuscript the new statistical approach of Event Coincidence Analysis (ECA) as well as it's R implementation is introduced, a methodology that allows assessing whether or not two types of event time series exhibit similar sequences of occurrences. Applications of the method are presented, analyzing climate impacts on different temporal and spacial scales: the impact of extraordinary expressions of various climatic variables on tree stem variations (subdaily and local scale), the impact of extreme temperature and precipitation events on the owering time of European shrub species (weekly and country scale), the impact of extreme temperature events on ecosystem health in terms of NDVI (weekly and continental scale) and the impact of El Ni{\~n}o and La Ni{\~n}a events on precipitation anomalies (seasonal and global scale). The applications presented in this thesis refine already known relationships based on classical methods and also deliver substantial new findings to the scientific community: the widely known positive correlation between flowering time and temperature for example is confirmed to be valid for the tails of the distributions while the widely assumed positive dependency between stem diameter variation and temperature is shown to be not valid for very warm and very cold days. The larger scale investigations underline the sensitivity of anthrogenically shaped landscapes towards temperature extremes in Europe and provide a comprehensive global ENSO impact map for strong precipitation events. Finally, by publishing the R implementation of the method, this thesis shall enable other researcher to further investigate on similar research questions by using Event Coincidence Analysis.}, language = {en} } @phdthesis{SvirejevaHopkins2004, author = {Svirejeva-Hopkins, Anastasia}, title = {Urbanised territories as a specific component of the global carbon cycle}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001512}, school = {Universit{\"a}t Potsdam}, year = {2004}, abstract = {Wir betrachten folgende Teile: die zus{\"a}tzlichen Kohlenstoff(C)-emissionen, welche aus der Umwandlung von nat{\"u}rlichem Umland durch Stadtwachstum resultieren, und die {\"A}nderung des C-Flusses durch 'urbanisierte' {\"O}kosysteme, soweit atmosph{\"a}risches C durch diese in umliegende nat{\"u}rliche {\"O}kosysteme entlang der Kette \“Atmosph{\"a}re -> Vegetation -> abgestorbene organische Substanzen\” gepumpt wird: d.h. C-Export; f{\"u}r den Zeitraum von 1980 bis 2050. Als Szenario nutzen wir Prognosen der regionalen Stadtbev{\"o}lkerung, welche durch ein 'Hybridmodell' generiert werden f{\"u}r acht Regionen. Alle Sch{\"a}tzungen der C-Fl{\"u}sse basieren auf zwei Modellen: das Regression Modell und das sogenannte G-Modell. Die Siedlungsfl{\"a}che, welche mit dem Wachstum der Stadtbev{\"o}lkerung zunimmt, wird in 'Gr{\"u}nfl{\"a}chen' (Parks, usw.), Geb{\"a}udefl{\"a}chen und informell st{\"a}dtisch genutzte Fl{\"a}chen (Slums, illegale Lagerpl{\"a}tze, usw.) unterteilt. Es werden j{\"a}hrlich die regionale und globale Dynamik der C-Emissionen und des C-Exports sowie die C-Gesamtbilanz berechnet. Dabei liefern beide Modelle qualitativ {\"a}hnliche Ergebnisse, jedoch gibt es einige quantitative Unterschiede. Im ersten Modell erreicht die globale Jahresemission f{\"u}r die Dekade 2020-2030 resultierend aus der Landnutzungs{\"a}nderung ein Maximum von 205 Mt/a. Die maximalen Beitr{\"a}ge zur globalen Emission werden durch China, die asiatische und die pazifische Region erbracht. Im zweiten Modell erh{\"o}ht sich die j{\"a}hrliche globale Emission von 1.12 GtC/a f{\"u}r 1980 auf 1.25 GtC/a f{\"u}r 2005 (1Gt = 109 t). Danach beginnt eine Reduzierung. Vergleichen wir das Emissionmaximum mit der Emission durch Abholzung im Jahre 1980 (1.36 GtC/a), k{\"o}nnen wir konstatieren, daß die Urbanisierung damit in vergleichbarer Gr{\"o}sse zur Emission beitr{\"a}gt. Bezogen auf die globale Dynamik des j{\"a}hrlichen C-Exports durch Urbanisierung beobachten wir ein monotones Wachstum bis zum nahezu dreifachen Wert von 24 MtC/a f{\"u}r 1980 auf 66 MtC/a f{\"u}r 2050 im ersten Modell, bzw. im zweiten Modell von 249 MtC/a f{\"u}r 1980 auf 505 MtC/a f{\"u}r 2050. Damit ist im zweiten Fall die Transportleistung der Siedlungsgebiete mit dem C-Transport durch Fl{\"u}sse in die Ozeane (196 .. 537 MtC/a) vergleichbar. Bei der Absch{\"a}tzung der Gesamtbilanz finden wir, daß die Urbanisierung die Bilanz in Richtung zu einer 'Senke' verschiebt. Entsprechend dem zweiten Modell beginnt sich die C-Gesamtbilanz (nach ann{\"a}hernder Konstanz) ab dem Jahre 2000 mit einer fast konstanten Rate zu verringern. Wenn das Maximum im Jahre 2000 bei 905MtC/a liegt, f{\"a}llt dieser Wert anschliessend bis zum Jahre 2050 auf 118 MtC/a. Bei Extrapolation dieser Dynamik in die Zukunft k{\"o}nnen wir annehmen, daß am Ende des 21. Jahrhunderts die \“urbane\” C-Gesamtbilanz Null bzw. negative Werte erreicht.}, language = {en} }