@misc{HartmannSchwanholdLeimkuehler2015, author = {Hartmann, Tobias and Schwanhold, Nadine and Leimk{\"u}hler, Silke}, title = {Assembly and catalysis of molybdenum or tungsten-containing formate dehydrogenases from bacteria}, series = {Biochimica et biophysica acta : Proteins and proteomics}, volume = {1854}, journal = {Biochimica et biophysica acta : Proteins and proteomics}, number = {9}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1570-9639}, doi = {10.1016/j.bbapap.2014.12.006}, pages = {1090 -- 1100}, year = {2015}, abstract = {The global carbon cycle depends on the biological transformations of C-1 compounds, which include the reductive incorporation of CO2 into organic molecules (e.g. in photosynthesis and other autotrophic pathways), in addition to the production of CO2 from formate, a reaction that is catalyzed by formate dehydrogenases (FDHs). FDHs catalyze, in general, the oxidation of formate to CO2 and H+. However, selected enzymes were identified to act as CO2 reductases, which are able to reduce CO2 to formate under physiological conditions. This reaction is of interest for the generation of formate as a convenient storage form of H-2 for future applications. Cofactor-containing FDHs are found in anaerobic bacteria and archaea, in addition to facultative anaerobic or aerobic bacteria. These enzymes are highly diverse and employ different cofactors such as the molybdenum cofactor (Moco), FeS clusters and flavins, or cytochromes. Some enzymes include tungsten (W) in place of molybdenum (Mo) at the active site. For catalytic activity, a selenocysteine (SeCys) or cysteine (Cys) ligand at the Mo atom in the active site is essential for the reaction. This review will focus on the characterization of Mo- and W-containing FDHs from bacteria, their active site structure, subunit compositions and its proposed catalytic mechanism. We will give an overview on the different mechanisms of substrate conversion available so far, in addition to providing an outlook on bio-applications of FDHs. This article is part of a Special Issue entitled: Cofactor-dependent proteins: evolution, chemical diversity and bio-applications. (C) 2014 Elsevier B.V. All rights reserved.}, language = {en} } @misc{CampbellHofreiter2015, author = {Campbell, Kevin L. and Hofreiter, Michael}, title = {Resurrecting phenotypes from ancient DNA sequences: promises and perspectives}, series = {Canadian journal of zoology = Revue canadienne de zoologie}, volume = {93}, journal = {Canadian journal of zoology = Revue canadienne de zoologie}, number = {9}, publisher = {NRC Research Press}, address = {Ottawa}, issn = {0008-4301}, doi = {10.1139/cjz-2014-0337}, pages = {701 -- 710}, year = {2015}, abstract = {Anatomical changes in extinct mammalian lineages over evolutionary time, such as the loss of fingers and teeth and the rapid increase in body size that accompanied the late Miocene dispersal of the progenitors of Steller's sea cows (Hydrodamalis gigas (Zimmermann, 1780)) into North Pacific waters and the convergent development of a thick pelage and accompanying reductions in ear and tail surface area of woolly mammoths (Mammuthus primigenius (Blumenbach, 1799)) and woolly rhinoceros (Coelodonta antiquitatis (Blumenbach, 1799)), are prime examples of adaptive evolution underlying the exploitation of new habitats. It is likely, however, that biochemical specializations adopted during these evolutionary transitions were of similar or even greater biological importance. As these "living" processes do not fossilize, direct information regarding the physiological attributes of extinct species has largely remained beyond the range of scientific inquiry. However, the ability to retrieve genomic sequences from ancient DNA samples, combined with ectopic expression systems, now permit the evolutionary origins and structural and functional properties of authentic prehistoric proteins to be examined in great detail. Exponential technical advances in ancient DNA retrieval, enrichment, and sequencing will soon permit targeted generation of complete genomes from hundreds of extinct species across the last one million years that, in combination with emerging in vitro expression, genome engineering, and cell differentiation techniques, promises to herald an exciting new trajectory of evolutionary research at the interface of biochemistry, genomics, palaeontology, and cell biology.}, language = {en} } @misc{DittmannThuenemannGuggerSivonenetal.2015, author = {Dittmann-Th{\"u}nemann, Elke and Gugger, Muriel and Sivonen, Kaarina and Fewer, David P.}, title = {Natural Product Biosynthetic Diversity and Comparative Genomics of the Cyanobacteria}, series = {Trends in microbiology}, volume = {23}, journal = {Trends in microbiology}, number = {10}, publisher = {Elsevier}, address = {Oxford}, issn = {0966-842X}, doi = {10.1016/j.tim.2015.07.008}, pages = {642 -- 652}, year = {2015}, abstract = {Cyanobacteria are an ancient lineage of slow-growing photosynthetic bacteria and a prolific source of natural products with intricate chemical structures and potent biological activities. The bulk of these natural products are known from just a handful of genera. Recent efforts have elucidated the mechanisms underpinning the biosynthesis of a diverse array of natural products from cyanobacteria. Many of the biosynthetic mechanisms are unique to cyanobacteria or rarely described from other organisms. Advances in genome sequence technology have precipitated a deluge of genome sequences for cyanobacteria. This makes it possible to link known natural products to biosynthetic gene clusters but also accelerates the discovery of new natural products through genome mining. These studies demonstrate that cyanobacteria encode a huge variety of cryptic gene clusters for the production of natural products, and the known chemical diversity is likely to be just a fraction of the true biosynthetic capabilities of this fascinating and ancient group of organisms.}, language = {en} } @misc{WinterMatlockShakietal.2015, author = {Winter, Bodo and Matlock, Teenie and Shaki, Samuel and Fischer, Martin H.}, title = {Mental number space in three dimensions}, series = {Neuroscience \& biobehavioral reviews : official journal of the International Behavioral Neuroscience Society}, volume = {57}, journal = {Neuroscience \& biobehavioral reviews : official journal of the International Behavioral Neuroscience Society}, publisher = {Elsevier}, address = {Oxford}, issn = {0149-7634}, doi = {10.1016/j.neubiorev.2015.09.005}, pages = {209 -- 219}, year = {2015}, abstract = {A large number of experimental findings from neuroscience and experimental psychology demonstrated interactions between spatial cognition and numerical cognition. In particular, many researchers posited a horizontal mental number line, where small numbers are thought of as being to the left of larger numbers. This review synthesizes work on the mental association between space and number, indicating the existence of multiple spatial mappings: recent research has found associations between number and vertical space, as well as associations between number and near/far space. We discuss number space in three dimensions with an eye on potential origins of the different number mappings, and how these number mappings fit in with our current knowledge of brain organization and brain-culture interactions. We derive novel predictions and show how this research fits into a general view of cognition as embodied, grounded and situated. (C) 2015 Elsevier Ltd. All rights reserved.}, language = {en} } @misc{KlasenPohlSigl2015, author = {Klasen, Michael and Pohl, Martin and Sigl, G{\"u}nter}, title = {Indirect and direct search for dark matter}, series = {Progress in particle and nuclear physics}, volume = {85}, journal = {Progress in particle and nuclear physics}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0146-6410}, doi = {10.1016/j.ppnp.2015.07.001}, pages = {1 -- 32}, year = {2015}, abstract = {The majority of the matter in the universe is still unidentified and under investigation by both direct and indirect means. Many experiments searching for the recoil of dark-matter particles off target nuclei in underground laboratories have established increasingly strong constraints on the mass and scattering cross sections of weakly interacting particles, and some have even seen hints at a possible signal. Other experiments search for a possible mixing of photons with light scalar or pseudo-scalar particles that could also constitute dark matter. Furthermore, annihilation or decay of dark matter can contribute to charged cosmic rays, photons at all energies, and neutrinos. Many existing and future ground-based and satellite experiments are sensitive to such signals. Finally, data from the Large Hadron Collider at CERN are scrutinized for missing energy as a signature of new weakly interacting particles that may be related to dark matter. In this review article we summarize the status of the field with an emphasis on the complementarity between direct detection in dedicated laboratory experiments, indirect detection in the cosmic radiation, and searches at particle accelerators. (C) 2015 Elsevier B.V. All rights reserved.}, language = {en} } @misc{TillackGraf2015, author = {Tillack-Graf, Anne-Kathleen}, title = {Madness and Sense}, series = {History of psychiatry}, volume = {26}, journal = {History of psychiatry}, number = {4}, publisher = {Sage Publ.}, address = {London}, issn = {0957-154X}, doi = {10.1177/0957154X15605782d}, pages = {498 -- 499}, year = {2015}, language = {en} } @misc{HixsonSharmaKainzetal.2015, author = {Hixson, Stefanie M. and Sharma, Bhanu and Kainz, Martin J. and Wacker, Alexander and Arts, Michael T.}, title = {Production, distribution, and abundance of long-chain omega-3 polyunsaturated fatty acids: a fundamental dichotomy between freshwater and terrestrial ecosystems}, series = {Environmental reviews = Dossiers environnement}, volume = {23}, journal = {Environmental reviews = Dossiers environnement}, number = {4}, publisher = {NRC Research Press}, address = {Ottawa}, issn = {1208-6053}, doi = {10.1139/er-2015-0029}, pages = {414 -- 424}, year = {2015}, abstract = {Long-chain polyunsaturated fatty acids (LC-PUFA) are critical for the health of aquatic and terrestrial organisms; therefore, understanding the production, distribution, and abundance of these compounds is imperative. Although the dynamics of LC-PUFA production and distribution in aquatic environments has been well documented, a systematic and comprehensive comparison to LC-PUFA in terrestrial environments has not been rigorously investigated. Here we use a data synthesis approach to compare and contrast fatty acid profiles of 369 aquatic and terrestrial organisms. Habitat and trophic level were interacting factors that determined the proportion of individual omega-3 (n-3) or omega-6 (n-6) PUFA in aquatic and terrestrial organisms. Higher total n-3 content compared with n-6 PUFA and a strong prevalence of the n-3 PUFA eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) characterized aquatic versus terrestrial organisms. Conversely, terrestrial organisms had higher linoleic acid (LNA) and alpha-linolenic acid (ALA) contents than aquatic organisms; however, the ratio of ALA: LNA was higher in aquatic organisms. The EPA + DHA content was higher in aquatic animals than terrestrial organisms, and increased from algae to invertebrates to vertebrates in the aquatic environment. An analysis of covariance (ANCOVA) revealed that fatty acid composition was highly dependent on the interaction between habitat and trophic level. We conclude that freshwater ecosystems provide an essential service through the production of n-3 LC-PUFA that are required to maintain the health of terrestrial organisms including humans.}, language = {en} } @misc{VankarLinker2015, author = {Vankar, Yashwant D. and Linker, Torsten}, title = {Recent Developments in the Synthesis of 2-C-Branched and 1,2-Annulated Carbohydrates}, series = {European journal of organic chemistry}, journal = {European journal of organic chemistry}, number = {35}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1434-193X}, doi = {10.1002/ejoc.201501176}, pages = {7633 -- 7642}, year = {2015}, abstract = {The importance of carbohydrate chemistry in biological and medicinal chemistry has led to enormous developments in the synthesis of carbohydrate mimics. In this context, the synthesis of branched sugars in general and of 2-C-branched carbohydrates in particular, as well as the synthesis of 1,2-annulated sugars, have received immense attention. They serve not only as carbohydrate mimics in the form of stand-alone molecules, but also as useful intermediates in the synthesis of many natural products, their analogues, and glycosidase inhibitors. This microreview covers the recent synthetic efforts in this area and puts the subject matter into proper perspective for future developments.}, language = {en} } @misc{HermanussenSchefflerGrothetal.2015, author = {Hermanussen, Michael and Scheffler, Christiane and Groth, Detlef and Aßmann, Christian}, title = {Height and skeletal morphology in relation to modern life style}, series = {Journal of physiological anthropology}, volume = {34}, journal = {Journal of physiological anthropology}, publisher = {BioMed Central}, address = {London}, issn = {1880-6805}, doi = {10.1186/s40101-015-0080-4}, pages = {5}, year = {2015}, abstract = {Height and skeletal morphology strongly relate to life style. Parallel to the decrease in physical activity and locomotion, modern people are slimmer in skeletal proportions. In German children and adolescents, elbow breadth and particularly relative pelvic breadth (50th centile of bicristal distance divided by body height) have significantly decreased in recent years. Even more evident than the changes in pelvic morphology are the rapid changes in body height in most modern countries since the end-19th and particularly since the mid-20th century. Modern Japanese mature earlier; the age at take-off (ATO, the age at which the adolescent growth spurt starts) decreases, and they are taller at all ages. Preece-Baines modelling of six national samples of Japanese children and adolescents, surveyed between 1955 and 2000, shows that this gain in height is largely an adolescent trend, whereas height at take-off (HTO) increased by less than 3 cm since 1955; adolescent growth (height gain between ATO and adult age) increased by 6 cm. The effect of globalization on the modern post-war Japanese society ("community effect in height") on adolescent growth is discussed.}, language = {en} } @misc{CesareAcostaVigilBartolietal.2015, author = {Cesare, Bernardo and Acosta-Vigil, Antonio and Bartoli, Omar and Ferrero, Silvio}, title = {What can we learn from melt inclusions in migmatites and granulites?}, series = {Lithos : an international journal of mineralogy, petrology, and geochemistry}, volume = {239}, journal = {Lithos : an international journal of mineralogy, petrology, and geochemistry}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0024-4937}, doi = {10.1016/j.lithos.2015.09.028}, pages = {186 -- 216}, year = {2015}, abstract = {With less than two decades of activity, research on melt inclusions (MI) in crystals from rocks that have undergone crustal anatexis - migmatites and granulites - is a recent addition to crustal petrology and geochemistry. Studies on this subject started with glassy inclusions in anatectic crustal enclaves in lavas, and then progressed to regionally metamorphosed and partially melted crustal rocks, where melt inclusions are normally crystallized into a cryptocrystalline aggregate (nanogranitoid). Since the first paper on melt inclusions in the granulites of the Kerala Khondalite Belt in 2009, reported and studied occurrences are already a few tens. Melt inclusions in migmatites and granulites show many analogies with their more common and long studied counterparts in igneous rocks, but also display very important differences and peculiarities, which are the subject of this review. Microstructurally, melt inclusions in anatectic rocks are small, commonly 10 mu m in diameter, and their main mineral host is peritectic garnet, although several other hosts have been observed. Inclusion contents vary from glass in enclaves that were cooled very rapidly from supersolidus temperatures, to completely crystallized material in slowly cooled regional migmatites. The chemical composition of the inclusions can be analyzed combining several techniques (SEM, EMP, NanoSIMS, LA-ICP-MS), but in the case of crystallized inclusions the experimental remelting under confining pressure in a piston cylinder is a prerequisite. The melt is generally granitic and peraluminous, although granodioritic to trondhjemitic compositions have also been found. Being mostly primary in origin, inclusions attest for the growth of their peritectic host in the presence of melt. As a consequence, the inclusions have the unique ability of preserving information on the composition of primary anatectic crustal melts, before they undergo any of the common following changes in their way to produce crustal magmas. For these peculiar features, melt inclusions in migmatites and granulites, largely overlooked so far, have the potential to become a fundamental tool for the study of crustal melting, crustal differentiation, and even the generation of the continental crust. (C) 2015 The Authors. Published by Elsevier B.V.}, language = {en} }