@phdthesis{Parry2023,
  author    = {Parry, Victor},
  title     = {From individual to community level: Assessing swimming movement, dispersal and fitness of zooplankton},
  doi       = {10.25932/publishup-59769},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-597697},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ix, 118},
  year      = {2023},
  abstract  = {Movement is a mechanism that shapes biodiversity patterns across spatialtemporal scales. Thereby, the movement process affects species interactions, population dynamics and community composition. In this thesis, I disentangled the effects of movement on the biodiversity of zooplankton ranging from the individual to the community level. On the individual movement level, I used video-based analysis to explore the implication of movement behavior on preypredator interactions. My results showed that swimming behavior was of great importance as it determined their survival in the face of predation. The findings also additionally highlighted the relevance of the defense status/morphology of prey, as it not only affected the prey-predator relationship by the defense itself but also by plastic movement behavior. On the community movement level, I used a field mesocosm experiment to explore the role of dispersal (time i.e., from the egg bank into the water body and space i.e., between water bodies) in shaping zooplankton metacommunities. My results revealed that priority effects and taxon-specific dispersal limitation influenced community composition. Additionally, different modes of dispersal also generated distinct community structures. The egg bank and biotic vectors (i.e. mobile links) played significant roles in the colonization of newly available habitat patches. One crucial aspect that influences zooplankton species after arrival in new habitats is the local environmental conditions. By using common garden experiments, I assessed the performance of zooplankton communities in their home vs away environments in a group of ponds embedded within an agricultural landscape. I identified environmental filtering as a driving factor as zooplankton communities from individual ponds developed differently in their home and away environments. On the individual species level, there was no consistent indication of local adaptation. For some species, I found a higher abundance/fitness in their home environment, but for others, the opposite was the case, and some cases were indifferent. Overall, the thesis highlights the links between movement and biodiversity patterns, ranging from the individual active movement to the community level.},
  language  = {en}
}
@phdthesis{Leins2023,
  author    = {Leins, Johannes A.},
  title     = {Combining model detail with large scales},
  doi       = {10.25932/publishup-58283},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-582837},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xv, 168},
  year      = {2023},
  abstract  = {The global climate crisis is significantly contributing to changing ecosystems, loss of biodiversity and is putting numerous species on the verge of extinction. In principle, many species are able to adapt to changing conditions or shift their habitats to more suitable regions. However, change is progressing faster than some species can adjust, or potential adaptation is blocked and disrupted by direct and indirect human action. Unsustainable anthropogenic land use in particular is one of the driving factors, besides global heating, for these ecologically critical developments. Precisely because land use is anthropogenic, it is also a factor that could be quickly and immediately corrected by human action. In this thesis, I therefore assess the impact of three climate change scenarios of increasing intensity in combination with differently scheduled mowing regimes on the long-term development and dispersal success of insects in Northwest German grasslands. The large marsh grasshopper (LMG, Stethophyma grossum, Linn{\´e} 1758) is used as a species of reference for the analyses. It inhabits wet meadows and marshes and has a limited, yet fairly good ability to disperse. Mowing and climate conditions affect the development and mortality of the LMG differently depending on its life stage. The specifically developed simulation model HiLEG (High-resolution Large Environmental Gradient) serves as a tool for investigating and projecting viability and dispersal success under different climate conditions and land use scenarios. It is a spatially explicit, stage- and cohort-based model that can be individually configured to represent the life cycle and characteristics of terrestrial insect species, as well as high-resolution environmental data and the occurrence of external disturbances. HiLEG is a freely available and adjustable software that can be used to support conservation planning in cultivated grasslands. In the three case studies of this thesis, I explore various aspects related to the structure of simulation models per se, their importance in conservation planning in general, and insights regarding the LMG in particular. It became apparent that the detailed resolution of model processes and components is crucial to project the long-term effect of spatially and temporally confined events. Taking into account conservation measures at the regional level has further proven relevant, especially in light of the climate crisis. I found that the LMG is benefiting from global warming in principle, but continues to be constrained by harmful mowing regimes. Land use measures could, however, be adapted in such a way that they allow the expansion and establishment of the LMG without overly affecting agricultural yields. Overall, simulation models like HiLEG can make an important contribution and add value to conservation planning and policy-making. Properly used, simulation results shed light on aspects that might be overlooked by subjective judgment and the experience of individual stakeholders. Even though it is in the nature of models that they are subject to limitations and only represent fragments of reality, this should not keep stakeholders from using them, as long as these limitations are clearly communicated. Similar to HiLEG, models could further be designed in such a way that not only the parameterization can be adjusted as required, but also the implementation itself can be improved and changed as desired. This openness and flexibility should become more widespread in the development of simulation models.},
  language  = {en}
}
@article{KiemelWeithoffTiedemann2022,
  author    = {Kiemel, Katrin and Weithoff, Guntram and Tiedemann, Ralph},
  title     = {DNA metabarcoding reveals impact of local recruitment, dispersal, and hydroperiod on assembly of a zooplankton metacommunity},
  series = {Molecular ecology},
  volume    = {32},
  journal   = {Molecular ecology},
  number    = {23},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {0962-1083},
  doi       = {10.1111/mec.16627},
  pages     = {20},
  year      = {2022},
  abstract  = {Understanding the environmental impact on the assembly of local communities in relation to their spatial and temporal connectivity is still a challenge in metacommunity ecology. This study aims to unravel underlying metacommunity processes and environmental factors that result in observed zooplankton communities. Unlike most metacommunity studies, we jointly examine active and dormant zooplankton communities using a DNA metabarcoding approach to overcome limitations of morphological species identification. We applied two-fragment (COI and 18S) metabarcoding to monitor communities of 24 kettle holes over a two-year period to unravel (i) spatial and temporal connectivity of the communities, (ii) environmental factors influencing local communities, and (iii) dominant underlying metacommunity processes in this system. We found a strong separation of zooplankton communities from kettle holes of different hydroperiods (degree of permanency) throughout the season, while the community composition within single kettle holes did not differ between years. Species richness was primarily dependent on pH and permanency, while species diversity (Shannon Index) was influenced by kettle hole location. Community composition was impacted by kettle hole size and surrounding field crops. Environmental processes dominated temporal and spatial processes. Sediment communities showed a different composition compared to water samples but did not differ between ephemeral and permanent kettle holes. Our results suggest that communities are mainly structured by environmental filtering based on pH, kettle hole size, surrounding field crops, and permanency. Environmental filtering based on specific conditions in individual kettle holes seems to be the dominant process in community assembly in the studied zooplankton metacommunity.},
  language  = {en}
}
@article{MalchowBocediPalmeretal.2021,
  author    = {Malchow, Anne-Kathleen and Bocedi, Greta and Palmer, Stephen C. F. and Travis, Justin M. J. and Zurell, Damaris},
  title     = {RangeShiftR: an R package for individual-based simulation of spatial eco-evolutionary dynamics and speciesu0027 responses to environmental changes},
  series = {Ecography},
  volume    = {44},
  journal   = {Ecography},
  number    = {10},
  publisher = {John Wiley \& Sons, Inc.},
  address   = {New Jersey},
  issn      = {1600-0587},
  pages     = {10},
  year      = {2021},
  abstract  = {Reliably modelling the demographic and distributional responses of a species to environmental changes can be crucial for successful conservation and management planning. Process-based models have the potential to achieve this goal, but so far they remain underused for predictions of species' distributions. Individual-based models offer the additional capability to model inter-individual variation and evolutionary dynamics and thus capture adaptive responses to environmental change. We present RangeShiftR, an R implementation of a flexible individual-based modelling platform which simulates eco-evolutionary dynamics in a spatially explicit way. The package provides flexible and fast simulations by making the software RangeShifter available for the widely used statistical programming platform R. The package features additional auxiliary functions to support model specification and analysis of results. We provide an outline of the package's functionality, describe the underlying model structure with its main components and present a short example. RangeShiftR offers substantial model complexity, especially for the demographic and dispersal processes. It comes with elaborate tutorials and comprehensive documentation to facilitate learning the software and provide help at all levels. As the core code is implemented in C++, the computations are fast. The complete source code is published under a public licence, making adaptations and contributions feasible. The RangeShiftR package facilitates the application of individual-based and mechanistic modelling to eco-evolutionary questions by operating a flexible and powerful simulation model from R. It allows effortless interoperation with existing packages to create streamlined workflows that can include data preparation, integrated model specification and results analysis. Moreover, the implementation in R strengthens the potential for coupling RangeShiftR with other models.},
  language  = {en}
}
@misc{MalchowBocediPalmeretal.2021,
  author    = {Malchow, Anne-Kathleen and Bocedi, Greta and Palmer, Stephen C. F. and Travis, Justin M. J. and Zurell, Damaris},
  title     = {RangeShiftR: an R package for individual-based simulation of spatial eco-evolutionary dynamics and speciesu0027 responses to environmental changes},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {10},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-52397},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-523979},
  pages     = {12},
  year      = {2021},
  abstract  = {Reliably modelling the demographic and distributional responses of a species to environmental changes can be crucial for successful conservation and management planning. Process-based models have the potential to achieve this goal, but so far they remain underused for predictions of species' distributions. Individual-based models offer the additional capability to model inter-individual variation and evolutionary dynamics and thus capture adaptive responses to environmental change. We present RangeShiftR, an R implementation of a flexible individual-based modelling platform which simulates eco-evolutionary dynamics in a spatially explicit way. The package provides flexible and fast simulations by making the software RangeShifter available for the widely used statistical programming platform R. The package features additional auxiliary functions to support model specification and analysis of results. We provide an outline of the package's functionality, describe the underlying model structure with its main components and present a short example. RangeShiftR offers substantial model complexity, especially for the demographic and dispersal processes. It comes with elaborate tutorials and comprehensive documentation to facilitate learning the software and provide help at all levels. As the core code is implemented in C++, the computations are fast. The complete source code is published under a public licence, making adaptations and contributions feasible. The RangeShiftR package facilitates the application of individual-based and mechanistic modelling to eco-evolutionary questions by operating a flexible and powerful simulation model from R. It allows effortless interoperation with existing packages to create streamlined workflows that can include data preparation, integrated model specification and results analysis. Moreover, the implementation in R strengthens the potential for coupling RangeShiftR with other models.},
  language  = {en}
}
@article{SchneebergerSchulzeScheffleretal.2021,
  author    = {Schneeberger, Karin and Schulze, Michael and Scheffler, Ingo and Caspers, Barbara A.},
  title     = {Evidence of female preference for odor of distant over local males in a bat with female dispersal},
  series = {Behavioral ecology : the official journal of the International Society for Behavioral Ecology},
  volume    = {32},
  journal   = {Behavioral ecology : the official journal of the International Society for Behavioral Ecology},
  number    = {4},
  publisher = {Oxford University Press},
  address   = {Oxford},
  issn      = {1045-2249},
  doi       = {10.1093/beheco/arab003},
  pages     = {657 -- 661},
  year      = {2021},
  abstract  = {Geographic variation of sexually selected male traits is common in animals. Female choice also varies geographically and several studies found female preference for local males, which is assumed to lead to local adaptation and, therefore, increases fitness. As females are the nondispersing sex in most mammalian taxa, this preference for local males might be explained by the learning of male characteristics. Studies on the preference of females in female-dispersing species are lacking so far. To find out whether such females would also show preferences for local males, we conducted a study on greater sac-winged bats (Saccopteryx bilineata), a species where females disperse and males stay in their natal colony. Male greater sac-winged bats possess a wing pouch that is filled with odoriferous secretion and fanned toward females during courtship display. In a combination of chemical analysis and behavioral preference tests, we analyzed whether the composition of wing sac secretion varies between two geographically distinct populations (300 km), and whether females show a preference for local or distant male scent. Using gas chromatography, we found significant differences in the composition of the wing sac odors between the two geographically distinct populations. In addition, the behavioral preference experiments revealed that females of both populations preferred the scent of geographically distant males over local males. The wing sac odor might thus be used to guarantee optimal outbreeding when dispersing to a new colony. This is-to our knowledge-the first study on odor preference of females of a species with female-biased dispersal.},
  language  = {en}
}
@article{MalchowBocediPalmeretal.2021,
  author    = {Malchow, Anne-Kathleen and Bocedi, Greta and Palmer, Stephen C. F. and Travis, Justin M. J. and Zurell, Damaris},
  title     = {RangeShiftR},
  series = {Ecography : pattern and diversity in ecology / Nordic Ecologic Society Oikos},
  volume    = {44},
  journal   = {Ecography : pattern and diversity in ecology / Nordic Ecologic Society Oikos},
  number    = {10},
  publisher = {Wiley-Blackwell},
  address   = {Oxford [u.a.]},
  issn      = {1600-0587},
  doi       = {10.1111/ecog.05689},
  pages     = {1443 -- 1452},
  year      = {2021},
  abstract  = {Reliably modelling the demographic and distributional responses of a species to environmental changes can be crucial for successful conservation and management planning. Process-based models have the potential to achieve this goal, but so far they remain underused for predictions of species' distributions. Individual-based models offer the additional capability to model inter-individual variation and evolutionary dynamics and thus capture adaptive responses to environmental change. We present RangeShiftR, an R implementation of a flexible individual-based modelling platform which simulates eco-evolutionary dynamics in a spatially explicit way. The package provides flexible and fast simulations by making the software RangeShifter available for the widely used statistical programming platform R. The package features additional auxiliary functions to support model specification and analysis of results. We provide an outline of the package's functionality, describe the underlying model structure with its main components and present a short example. RangeShiftR offers substantial model complexity, especially for the demographic and dispersal processes. It comes with elaborate tutorials and comprehensive documentation to facilitate learning the software and provide help at all levels. As the core code is implemented in C++, the computations are fast. The complete source code is published under a public licence, making adaptations and contributions feasible. The RangeShiftR package facilitates the application of individual-based and mechanistic modelling to eco-evolutionary questions by operating a flexible and powerful simulation model from R. It allows effortless interoperation with existing packages to create streamlined workflows that can include data preparation, integrated model specification and results analysis. Moreover, the implementation in R strengthens the potential for coupling RangeShiftR with other models.},
  language  = {en}
}
@article{GrossAllhoffBlasiusetal.2020,
  author    = {Gross, Thilo and Allhoff, Korinna Theresa and Blasius, Bernd and Brose, Ulrich and Drossel, Barbara and Fahimipour, Ashkaan K. and Guill, Christian and Yeakel, Justin D. and Zeng, Fanqi},
  title     = {Modern models of trophic meta-communities},
  series = {Philosophical transactions of the Royal Society of London : B, Biological sciences},
  volume    = {375},
  journal   = {Philosophical transactions of the Royal Society of London : B, Biological sciences},
  number    = {1814},
  publisher = {Royal Society},
  address   = {London},
  issn      = {0962-8436},
  doi       = {10.1098/rstb.2019.0455},
  pages     = {12},
  year      = {2020},
  abstract  = {Dispersal and foodweb dynamics have long been studied in separate models. However, over the past decades, it has become abundantly clear that there are intricate interactions between local dynamics and spatial patterns. Trophic meta-communities, i.e. meta-foodwebs, are very complex systems that exhibit complex and often counterintuitive dynamics. Over the past decade, a broad range of modelling approaches have been used to study these systems. In this paper, we review these approaches and the insights that they have revealed. We focus particularly on recent papers that study trophic interactions in spatially extensive settings and highlight the common themes that emerged in different models. There is overwhelming evidence that dispersal (and particularly intermediate levels of dispersal) benefits the maintenance of biodiversity in several different ways. Moreover, some insights have been gained into the effect of different habitat topologies, but these results also show that the exact relationships are much more complex than previously thought, highlighting the need for further research in this area. This article is part of the theme issue 'Integrative research perspectives on marine conservation'.},
  language  = {en}
}
@misc{LozadaGobilardStangPirhoferWalzletal.2019,
  author    = {Lozada Gobilard, Sissi Donna and Stang, Susanne and Pirhofer-Walzl, Karin and Kalettka, Thomas and Heinken, Thilo and Schr{\"o}der, Boris and Eccard, Jana and Jasmin Radha, Jasmin},
  title     = {Environmental filtering predicts plant-community trait distribution and diversity},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {629},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42484},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-424843},
  pages     = {13},
  year      = {2019},
  abstract  = {Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting. We used a system of 46 small wetlands (kettle holes)—natural small-scale freshwater habitats rarely considered in nature conservation policies—embedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flatsloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes. Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes. Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.},
  language  = {en}
}
@article{LozadaGobilardStangPirhoferWalzletal.2019,
  author    = {Lozada Gobilard, Sissi Donna and Stang, Susanne and Pirhofer-Walzl, Karin and Kalettka, Thomas and Heinken, Thilo and Schr{\"o}der, Boris and Eccard, Jana and Jasmin Radha, Jasmin},
  title     = {Environmental filtering predicts plant-community trait distribution and diversity},
  series = {Ecology and Evolution},
  journal   = {Ecology and Evolution},
  publisher = {John Wiley \& Sons, Inc.},
  address   = {Hoboken},
  issn      = {2045-7758},
  doi       = {10.1002/ece3.4883},
  pages     = {13},
  year      = {2019},
  abstract  = {Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting. We used a system of 46 small wetlands (kettle holes)—natural small-scale freshwater habitats rarely considered in nature conservation policies—embedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flatsloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes. Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes. Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.},
  language  = {en}
}