@article{DerakhshaniKurzJaptoketal.2019,
  author    = {Derakhshani, Shaghayegh and Kurz, Andreas and Japtok, Lukasz and Schumacher, Fabian and Pilgram, Lisa and Steinke, Maria and Kleuser, Burkhard and Sauer, Markus and Schneider-Schaulies, Sibylle and Avota, Elita},
  title     = {Measles Virus Infection Fosters Dendritic Cell Motility in a 3D Environment to Enhance Transmission to Target Cells in the Respiratory Epithelium},
  series = {Frontiers in immunology},
  volume    = {10},
  journal   = {Frontiers in immunology},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {1664-3224},
  doi       = {10.3389/fimmu.2019.01294},
  pages     = {14},
  year      = {2019},
  abstract  = {Transmission of measles virus (MV) from dendritic to airway epithelial cells is considered as crucial to viral spread late in infection. Therefore, pathways and effectors governing this process are promising targets for intervention. To identify these, we established a 3D respiratory tract model where MV transmission by infected dendritic cells (DCs) relied on the presence of nectin-4 on H358 lung epithelial cells. Access to recipient cells is an important prerequisite for transmission, and we therefore analyzed migration of MV-exposed DC cultures within the model. Surprisingly, enhanced motility toward the epithelial layer was observed for MV-infected DCs as compared to their uninfected siblings. This occurred independently of factors released from H358 cells indicating that MV infection triggered cytoskeletal remodeling associated with DC polarization enforced velocity. Accordingly, the latter was also observed for MV-infected DCs in collagen matrices and was particularly sensitive to ROCK inhibition indicating infected DCs preferentially employed the amoeboid migration mode. This was also implicated by loss of podosomes and reduced filopodial activity both of which were retained in MV-exposed uninfected DCs. Evidently, sphingosine kinase (SphK) and sphingosine-1-phosphate (S1P) as produced in response to virus-infection in DCs contributed to enhanced velocity because this was abrogated upon inhibition of sphingosine kinase activity. These findings indicate that MV infection promotes a push-and-squeeze fast amoeboid migration mode via the SphK/S1P system characterized by loss of filopodia and podosome dissolution. Consequently, this enables rapid trafficking of virus toward epithelial cells during viral exit.},
  language  = {en}
}
@article{DieterichLindemannMoskoppetal.2022,
  author    = {Dieterich, Peter and Lindemann, Otto and Moskopp, Mats Leif and Tauzin, Sebastien and Huttenlocher, Anna and Klages, Rainer and Chechkin, Aleksei V. and Schwab, Albrecht},
  title     = {Anomalous diffusion and asymmetric tempering memory in neutrophil chemotaxis},
  series = {PLoS Computational Biology : a new community journal},
  volume    = {18},
  journal   = {PLoS Computational Biology : a new community journal},
  number    = {5},
  publisher = {PLoS},
  address   = {San Fransisco},
  issn      = {1553-734X},
  doi       = {10.1371/journal.pcbi.1010089},
  pages     = {26},
  year      = {2022},
  abstract  = {Neutrophil granulocytes are essential for the first host defense. After leaving the blood circulation they migrate efficiently towards sites of inflammation. They are guided by chemoattractants released from cells within the inflammatory foci. On a cellular level, directional migration is a consequence of cellular front-rear asymmetry which is induced by the concentration gradient of the chemoattractants. The generation and maintenance of this asymmetry, however, is not yet fully understood. Here we analyzed the paths of chemotacting neutrophils with different stochastic models to gain further insight into the underlying mechanisms. Wildtype chemotacting neutrophils show an anomalous superdiffusive behavior. CXCR2 blockade and TRPC6-knockout cause the tempering of temporal correlations and a reduction of chemotaxis. Importantly, such tempering is found both in vitro and in vivo. These findings indicate that the maintenance of anomalous dynamics is crucial for chemotactic behavior and the search efficiency of neutrophils. The motility of neutrophils and their ability to sense and to react to chemoattractants in their environment are of central importance for the innate immunity. Neutrophils are guided towards sites of inflammation following the activation of G-protein coupled chemoattractant receptors such as CXCR2 whose signaling strongly depends on the activity of Ca2+ permeable TRPC6 channels. It is the aim of this study to analyze data sets obtained in vitro (murine neutrophils) and in vivo (zebrafish neutrophils) with a stochastic mathematical model to gain deeper insight into the underlying mechanisms. The model is based on the analysis of trajectories of individual neutrophils. Bayesian data analysis, including the covariances of positions for fractional Brownian motion as well as for exponentially and power-law tempered model variants, allows the estimation of parameters and model selection. Our model-based analysis reveals that wildtype neutrophils show pure superdiffusive fractional Brownian motion. This so-called anomalous dynamics is characterized by temporal long-range correlations for the movement into the direction of the chemotactic CXCL1 gradient. Pure superdiffusion is absent vertically to this gradient. This points to an asymmetric 'memory' of the migratory machinery, which is found both in vitro and in vivo. CXCR2 blockade and TRPC6-knockout cause tempering of temporal correlations in the chemotactic gradient. This can be interpreted as a progressive loss of memory, which leads to a marked reduction of chemotaxis and search efficiency of neutrophils. In summary, our findings indicate that spatially differential regulation of anomalous dynamics appears to play a central role in guiding efficient chemotactic behavior.},
  language  = {en}
}
@phdthesis{Michaelis2022,
  author    = {Michaelis, Marcus},
  title     = {Molekulare Erkennung von Cellulose und Cellulose-Fragmenten durch Cellulose-Bindemodule \& Interaktionsstudien zwischen den zytoplasmatischen Dom{\"a}nen von Integrin-β1/β3 und dem fokalen Adh{\"a}sionsprotein Paxillin},
  doi       = {10.25932/publishup-55516},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-555162},
  school      = {Universit{\"a}t Potsdam},
  pages     = {VI, 171},
  year      = {2022},
  abstract  = {Proteine erf{\"u}llen bei einer Vielzahl von Prozessen eine essenzielle Rolle. Um diese Funktionsweisen zu verstehen, bedarf es der Aufkl{\"a}rung derer Struktur und deren Bindungsverhaltens mit anderen Molek{\"u}len wie Proteinen, Peptiden, Kohlenhydraten oder kleinen Molek{\"u}len. Im ersten Teil dieser Arbeit wurden der Wildtyp und die Punktmutante N126W eines Kohlenhydrat-bindenden Proteins aus dem hitzestabilen Bakterium C. thermocellum untersucht, welches Teil eines Komplexes ist, der Kohlenhydrate wie Cellulose erkennen, binden und abbauen kann. Dazu wurde dieses Protein mit E.coli Bakterien hergestellt und durch Metallchelat- und Gr{\"o}ßenausschlusschromatographie gereinigt. Die Proteine konnten isotopenmarkiert mittels Kernspinresonanz-Spektroskopie (NMR) untersucht werden. H/D-Austauschexperimente zeigten leicht und schwer zug{\"a}ngliche Stellen im Protein f{\"u}r eine m{\"o}gliche Ligandenwechselwirkung. Anschließend konnte eine Interaktion beider Proteine mit Cellulosefragmenten festgestellt werden. Diese interagieren {\"u}ber zwischenmolekulare Kr{\"a}fte mit den Seitenketten von aromatischen Aminos{\"a}uren und {\"u}ber Wasserstoffbr{\"u}ckenbindungen mit anderen Resten. Weiterhin wurde die Calcium-Bindestelle analysiert und es konnte gezeigt werden, das diese nach der Proteinherstellung mit einem Calcium-Ion besetzt ist und dieses mit dem Komplexbildner EDTA entfernbar ist, jedoch wieder reversibel besetzt werden kann. Zum Schluss wurde mittels zweier Methoden versucht (grafting from und grafting to), das Protein mit einem temperatursensorischen Polymer (Poly-N-Isopropylacrylamid) zu koppeln, um so Eigenschaften wie L{\"o}slichkeit oder Stabilit{\"a}t zu beeinflussen. Es zeigte sich, das w{\"a}hrend die grafting from Methode (Polymer w{\"a}chst direkt vom Protein) zu einer teilweisen Entfaltung und Destabilisierung des Proteins f{\"u}hrte, bei der grafting to Methode (Polymer wird separat hergestellt und dann an das Protein gekoppelt) das Protein seine Stabilit{\"a}t behielt und nur wenige Polymerketten angebaut waren. Der zweite Teil dieser Arbeit besch{\"a}ftigte sich mit der Interaktion von zwei LIM-Dom{\"a}nen des Proteins Paxillin und der zytoplasmatischen Dom{\"a}ne der Peptide Integrin-β1 und Integrin-β3. Diese spielen eine wichtige Rolle bei der Bewegung von Zellen. Dabei interagieren sie mit einer Vielzahl an anderen Proteinen, um fokale Adh{\"a}sionen (Multiproteinkomplexe) zu bilden. Bei der Herstellung des Peptids Integrin-β3 zeigte sich durch Gr{\"o}ßenausschlusschromatographie und Massenspektrometrie ein Abbau, bei dem verschiedene Aminos{\"a}uregruppen abgespalten werden. Dieser konnte durch eine Zugabe des Serinprotease-Inhibitors AEBSF verhindert werden. Anschließend wurde die direkte Interaktion der Proteine untereinander mittels NMR untersucht. Dabei zeigte sich, das Integrin-β1 und Integrin-β3 an die gleiche Position binden, n{\"a}mlich an den flexiblen Loop der LIM3-Dom{\"a}ne von Paxillin. Die Dissoziationskonstanten zeigten, dass Integrin-β1 mit einer zirka zehnfach h{\"o}heren Affinit{\"a}t im Vergleich zu Integrin-β3 an Paxillin bindet. W{\"a}hrend Paxillins Bindestelle an Integrin-β1 in der Mitte des Peptids liegt, ist bei Integrin-β3 der C-Terminus essenziell. Daher wurden die drei C-terminalen Aminos{\"a}uren entfernt und erneut Bindungsstudien durchgef{\"u}hrt, welche gezeigt haben, das die Affinit{\"a}t dadurch fast vollst{\"a}ndig unterbunden wurde. Final wurde der flexible Loop der LIM3-Dom{\"a}ne in zwei andere Aminos{\"a}uresequenzen mutiert, um die Bindung auf der Paxillin-Seite auszul{\"o}schen. Jedoch zeigten sowohl Zirkulardichroismus-Spektroskopie als auch NMR-Spektroskopie, dass die Mutationen zu einer teilweisen Entfaltung der Dom{\"a}ne gef{\"u}hrt haben und somit nicht als geeignete Kandidaten f{\"u}r diese Studien identifiziert werden konnten.},
  language  = {de}
}
@article{MoldenhawerMorenoSchindleretal.2022,
  author    = {Moldenhawer, Ted and Moreno, Eduardo and Schindler, Daniel and Flemming, Sven and Holschneider, Matthias and Huisinga, Wilhelm and Alonso, Sergio and Beta, Carsten},
  title     = {Spontaneous transitions between amoeboid and keratocyte-like modes of migration},
  series = {Frontiers in Cell and Developmental Biology},
  volume    = {10},
  journal   = {Frontiers in Cell and Developmental Biology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-634X},
  doi       = {10.3389/fcell.2022.898351},
  pages     = {13},
  year      = {2022},
  abstract  = {The motility of adherent eukaryotic cells is driven by the dynamics of the actin cytoskeleton. Despite the common force-generating actin machinery, different cell types often show diverse modes of locomotion that differ in their shape dynamics, speed, and persistence of motion. Recently, experiments in Dictyostelium discoideum have revealed that different motility modes can be induced in this model organism, depending on genetic modifications, developmental conditions, and synthetic changes of intracellular signaling. Here, we report experimental evidence that in a mutated D. discoideum cell line with increased Ras activity, switches between two distinct migratory modes, the amoeboid and fan-shaped type of locomotion, can even spontaneously occur within the same cell. We observed and characterized repeated and reversible switchings between the two modes of locomotion, suggesting that they are distinct behavioral traits that coexist within the same cell. We adapted an established phenomenological motility model that combines a reaction-diffusion system for the intracellular dynamics with a dynamic phase field to account for our experimental findings.},
  language  = {en}
}