@article{BoehnkeKrehlMoermannetal.2022, author = {B{\"o}hnke, Denise and Krehl, Alice and Moermann, Kai and Volk, Rebekka and L{\"u}tzkendorf, Thomas and Naber, Elias and Becker, Ronja and Norra, Stefan}, title = {Mapping urban green and its ecosystem services at microscale-a methodological approach for climate adaptation and biodiversity}, series = {Sustainability / Multidisciplinary Digital Publishing Institute (MDPI)}, volume = {14}, journal = {Sustainability / Multidisciplinary Digital Publishing Institute (MDPI)}, number = {15}, publisher = {MDPI}, address = {Basel}, issn = {2071-1050}, doi = {10.3390/su14159029}, pages = {26}, year = {2022}, abstract = {The current awareness of the high importance of urban green leads to a stronger need for tools to comprehensively represent urban green and its benefits. A common scientific approach is the development of urban ecosystem services (UES) based on remote sensing methods at the city or district level. Urban planning, however, requires fine-grained data that match local management practices. Hence, this study linked local biotope and tree mapping methods to the concept of ecosystem services. The methodology was tested in an inner-city district in SW Germany, comparing publicly accessible areas and non-accessible courtyards. The results provide area-specific [m(2)] information on the green inventory at the microscale, whereas derived stock and UES indicators form the basis for comparative analyses regarding climate adaptation and biodiversity. In the case study, there are ten times more micro-scale green spaces in private courtyards than in the public space, as well as twice as many trees. The approach transfers a scientific concept into municipal planning practice, enables the quantitative assessment of urban green at the microscale and illustrates the importance for green stock data in private areas to enhance decision support in urban development. Different aspects concerning data collection and data availability are critically discussed.}, language = {en} } @article{HofreiterHartmann2020, author = {Hofreiter, Michael and Hartmann, Stefanie}, title = {Reconstructing protein-coding sequences from ancient DNA}, series = {Odorant binding and chemosensory proteins}, volume = {642}, journal = {Odorant binding and chemosensory proteins}, publisher = {Academic Press, an imprint of Elsevier}, address = {Cambridge, MA.}, isbn = {978-0-12-821157-1}, issn = {0076-6879}, doi = {10.1016/bs.mie.2020.05.008}, pages = {21 -- 33}, year = {2020}, abstract = {Obtaining information about functional details of proteins of extinct species is of critical importance for a better understanding of the real-life appearance, behavior and ecology of these lost entries in the book of life. In this chapter, we discuss the possibilities to retrieve the necessary DNA sequence information from paleogenomic data obtained from fossil specimens, which can then be used to express and subsequently analyze the protein of interest. We discuss the problems specific to ancient DNA, including mis-coding lesions, short read length and incomplete paleogenome assemblies. Finally, we discuss an alternative, but currently rarely used approach, direct PCR amplification, which is especially useful for comparatively short proteins.}, language = {en} } @misc{SmetanovaMuellerZargaretal.2020, author = {Smetanov{\´a}, Anna and M{\"u}ller, Anne and Zargar, Morteza and Suleiman, Mohamed A. and Gholami, Faraz Rabei and Mousavi, Maryam}, title = {Mesoscale mapping of sediment source hotspots for dam sediment management in data-sparse semi-arid catchments}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {2}, issn = {1866-8372}, doi = {10.25932/publishup-47244}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-472441}, pages = {26}, year = {2020}, abstract = {Land degradation and water availability in semi-arid regions are interdependent challenges for management that are influenced by climatic and anthropogenic changes. Erosion and high sediment loads in rivers cause reservoir siltation and decrease storage capacity, which pose risk on water security for citizens, agriculture, and industry. In regions where resources for management are limited, identifying spatial-temporal variability of sediment sources is crucial to decrease siltation. Despite widespread availability of rigorous methods, approaches simplifying spatial and temporal variability of erosion are often inappropriately applied to very data sparse semi-arid regions. In this work, we review existing approaches for mapping erosional hotspots, and provide an example of spatial-temporal mapping approach in two case study regions. The barriers limiting data availability and their effects on erosion mapping methods, their validation, and resulting prioritization of leverage management areas are discussed.}, language = {en} } @article{SmetanovaMuellerZargaretal.2020, author = {Smetanov{\´a}, Anna and M{\"u}ller, Anne and Zargar, Morteza and Suleiman, Mohamed A. and Gholami, Faraz Rabei and Mousavi, Maryam}, title = {Mesoscale mapping of sediment source hotspots for dam sediment management in data-sparse semi-arid catchments}, series = {Water}, volume = {12}, journal = {Water}, number = {2}, publisher = {MDPI}, address = {Basel}, issn = {2073-4441}, doi = {10.3390/w12020396}, pages = {1 -- 24}, year = {2020}, abstract = {Land degradation and water availability in semi-arid regions are interdependent challenges for management that are influenced by climatic and anthropogenic changes. Erosion and high sediment loads in rivers cause reservoir siltation and decrease storage capacity, which pose risk on water security for citizens, agriculture, and industry. In regions where resources for management are limited, identifying spatial-temporal variability of sediment sources is crucial to decrease siltation. Despite widespread availability of rigorous methods, approaches simplifying spatial and temporal variability of erosion are often inappropriately applied to very data sparse semi-arid regions. In this work, we review existing approaches for mapping erosional hotspots, and provide an example of spatial-temporal mapping approach in two case study regions. The barriers limiting data availability and their effects on erosion mapping methods, their validation, and resulting prioritization of leverage management areas are discussed.}, language = {en} } @article{TranBuiKappeletal.2020, author = {Tran, Quan Hong and Bui, Ngoc Hong and Kappel, Christian and Dau, Nga Thi Ngoc and Nguyen, Loan Thi and Tran, Thuy Thi and Khanh, Tran Dang and Trung, Khuat Huu and Lenhard, Michael and Vi, Son Lang}, title = {Mapping-by-sequencing via MutMap identifies a mutation in ZmCLE7 underlying fasciation in a newly developed EMS mutant population in an elite tropical maize inbred}, series = {Genes}, volume = {11}, journal = {Genes}, number = {3}, publisher = {MDPI}, address = {Basel}, issn = {2073-4425}, doi = {10.3390/genes11030281}, pages = {1 -- 14}, year = {2020}, abstract = {Induced point mutations are important genetic resources for their ability to create hypo- and hypermorphic alleles that are useful for understanding gene functions and breeding. However, such mutant populations have only been developed for a few temperate maize varieties, mainly B73 and W22, yet no tropical maize inbred lines have been mutagenized and made available to the public to date. We developed a novel Ethyl Methanesulfonate (EMS) induced mutation resource in maize comprising 2050 independent M2 mutant families in the elite tropical maize inbred ML10. By phenotypic screening, we showed that this population is of comparable quality with other mutagenized populations in maize. To illustrate the usefulness of this population for gene discovery, we performed rapid mapping-by-sequencing to clone a fasciated-ear mutant and identify a causal promoter deletion in ZmCLE7 (CLE7). Our mapping procedure does not require crossing to an unrelated parent, thus is suitable for mapping subtle traits and ones affected by heterosis. This first EMS population in tropical maize is expected to be very useful for the maize research community. Also, the EMS mutagenesis and rapid mapping-by-sequencing pipeline described here illustrate the power of performing forward genetics in diverse maize germplasms of choice, which can lead to novel gene discovery due to divergent genetic backgrounds.}, language = {en} }