@misc{EngelhardKumkeLoehmannsroeben2006, author = {Engelhard, Sonja and Kumke, Michael Uwe and L{\"o}hmannsr{\"o}ben, Hans-Gerd}, title = {OPQS - optical process and quality sensing : exemplary applications in the beerbrewing and polyurethane foaming processes}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-12191}, year = {2006}, abstract = {Optical methods play an important role in process analytical technologies (PAT). Four examples of optical process and quality sensing (OPQS) are presented, which are based on three important experimental techniques: near-infrared absorption, luminescence quenching, and a novel method, photon density wave (PDW) spectroscopy. These are used to evaluate four process and quality parameters related to beer brewing and polyurethane (PU) foaming processes: the ethanol content and the oxygen (O2) content in beer, the biomass in a bioreactor, and the cellular structures of PU foam produced in a pilot production plant.}, language = {en} } @phdthesis{Blacha2009, author = {Blacha, Anna Maria}, title = {Investigating the role of regulatory genes in heterosis for superior growth and biomass production in Arabidopsis thaliana}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-46146}, school = {Universit{\"a}t Potsdam}, year = {2009}, abstract = {'Heterosis' is a term used in genetics and breeding referring to hybrid vigour or the superiority of hybrids over their parents in terms of traits such as size, growth rate, biomass, fertility, yield, nutrient content, disease resistance or tolerance to abiotic and abiotic stress. Parental plants which are two different inbred (pure) lines that have desired traits are crossed to obtain hybrids. Maximum heterosis is observed in the first generation (F1) of crosses. Heterosis has been utilised in plant and animal breeding programs for at least 90 years: by the end of the 21st century, 65\% of worldwide maize production was hybrid-based. Generally, it is believed that an understanding of the molecular basis of heterosis will allow the creation of new superior genotypes which could either be used directly as F1 hybrids or form the basis for the future breeding selection programmes. Two selected accessions of a research model plant Arabidopsis thaliana (thale cress) were crossed to obtain hybrids. These typically exhibited a 60-80\% increase of biomass when compared to the average weight of both parents. This PhD project focused on investigating the role of selected regulatory genes given their potentially key involvement in heterosis. In the first part of the project, the most appropriate developmental stage for this heterosis study was determined by metabolite level measurements and growth observations in parents and hybrids. At the selected stage, around 60 candidate regulatory genes (i.e. differentially expressed in hybrids when compared to parents) were identified. Of these, the majority were transcription factors, genes that coordinate the expression of other genes. Subsequent expression analyses of the candidate genes in biomass-heterotic hybrids of other Arabidopsis accessions revealed a differential expression in a gene subset, highlighting their relevance for heterosis. Moreover, a fraction of the candidate regulatory genes were found within DNA regions closely linked to the genes that underlie the biomass or growth heterosis. Additional analyses to validate the role of selected candidate regulatory genes in heterosis appeared insufficient to establish their role in heterosis. This uncovered a need for using novel approaches as discussed in the thesis. Taken together, the work provided an insight into studies on the molecular mechanisms underlying heterosis. Although studies on heterosis date back to more than one hundred years, this project as many others revealed that more investigations will be needed to uncover this phenomenon.}, language = {en} } @article{MeyerWituckaWallBecheretal.2012, author = {Meyer, Rhonda C. and Witucka-Wall, Hanna and Becher, Martina and Blacha, Anna Maria and Boudichevskaia, Anastassia and D{\"o}rmann, Peter and Fiehn, Oliver and Friedel, Svetlana and von Korff, Maria and Lisec, Jan and Melzer, Michael and Repsilber, Dirk and Schmidt, Renate and Scholz, Matthias and Selbig, Joachim and Willmitzer, Lothar and Altmann, Thomas}, title = {Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids}, series = {The plant journal}, volume = {71}, journal = {The plant journal}, number = {4}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0960-7412}, doi = {10.1111/j.1365-313X.2012.05021.x}, pages = {669 -- 683}, year = {2012}, abstract = {Heterosis-associated cellular and molecular processes were analyzed in seeds and seedlings of Arabidopsis thaliana accessions Col-0 and C24 and their heterotic hybrids. Microscopic examination revealed no advantages in terms of hybrid mature embryo organ sizes or cell numbers. Increased cotyledon sizes were detectable 4 days after sowing. Growth heterosis results from elevated cell sizes and numbers, and is well established at 10 days after sowing. The relative growth rates of hybrid seedlings were most enhanced between 3 and 4 days after sowing. Global metabolite profiling and targeted fatty acid analysis revealed maternal inheritance patterns for a large proportion of metabolites in the very early stages. During developmental progression, the distribution shifts to dominant, intermediate and heterotic patterns, with most changes occurring between 4 and 6 days after sowing. The highest incidence of heterotic patterns coincides with establishment of size differences at 4 days after sowing. In contrast, overall transcript patterns at 4, 6 and 10 days after sowing are characterized by intermediate to dominant patterns, with parental transcript levels showing the largest differences. Overall, the results suggest that, during early developmental stages, intermediate gene expression and higher metabolic activity in the hybrids compared to the parents lead to better resource efficiency, and therefore enhanced performance in the hybrids.}, language = {en} } @article{VorpahlDislichElsenbeeretal.2013, author = {Vorpahl, Peter and Dislich, Claudia and Elsenbeer, Helmut and M{\"a}rker, Michael and Schr{\"o}der-Esselbach, Boris}, title = {Biotic controls on shallow translational landslides}, series = {Earth surface processes and landforms : the journal of the British Geomorphological Research Group}, volume = {38}, journal = {Earth surface processes and landforms : the journal of the British Geomorphological Research Group}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0197-9337}, doi = {10.1002/esp.3320}, pages = {198 -- 212}, year = {2013}, abstract = {In undisturbed tropical montane rainforests massive organic layers accommodate the majority of roots and only a small fraction of roots penetrate the mineral soil. We investigated the contribution of vegetation to slope stability in such environments by modifying a standard model for slope stability to include an organic layer with distinct mechanical properties. The importance of individual model parameters was evaluated using detailed measurements of soil and vegetation properties to reproduce the observed depth of 11 shallow landslides in the Andes of southern Ecuador. By distinguishing mineral soil, organic layer and above-ground biomass, it is shown that in this environment vegetation provides a destabilizing effect mainly due to its contribution to the mass of the organic layer (up to 973 t ha-1 under wet conditions). Sensitivity analysis shows that the destabilizing effect of the mass of soil and vegetation can only be effective on slopes steeper than 37.9 degrees. This situation applies to 36\% of the study area. Thus, on the steep slopes of this megadiverse ecosystem, the mass of the growing forest promotes landsliding, which in turn promotes a new cycle of succession. This feedback mechanism is worth consideration in further investigations of the impact of landslides on plant diversity in similar environments.}, language = {en} } @article{BabalolaOmorogieBabarindeetal.2016, author = {Babalola, Jonathan Oyebamiji and Omorogie, Martins Osaigbovo and Babarinde, Adesola Abiola and Unuabonah, Emmanuel Iyayi and Oninla, Vincent Olukayode}, title = {OPTIMIZATION OF THE BIOSORPTION OF Cr3+, Cd2+ AND Pb2+ USING A NEW BIOWASTE: Zea mays SEED CHAFF}, series = {Environmental engineering and management journal}, volume = {15}, journal = {Environmental engineering and management journal}, publisher = {Gh. Asachi Universitatea Tehnic{\"A}ƒ Ia{\AA}Ÿi}, address = {Iasi}, issn = {1582-9596}, pages = {1571 -- 1580}, year = {2016}, abstract = {This study highlights the potential use of yellow Zea mays seed chaff (YZMSC) biomass as a biosorbent for the removal of Cr3+, Cd2+ and Pb2+ ions from aqueous solutions. Fourier transformed Infrared analysis of the biomass suggests that YZMSC biomass is basically composed of cellulose and methyl cellulose. The biosorption capacities, q(max), of YZMSC biomass for Cr3+, Cd2+ and Pb2+ are 14.68, 121.95 and 384.62 mg/g respectively. Biosorption equilibrium was achieved at 20, 30 and 60 min for Cr3+, Cd2+ and Pb2+ respectively. YZMSC biomass was found to have higher biosorption capacity and overall kinetic rate of uptake for Pb2+ than for Cd2+ and Cr3+. However, Cr3+ had better initial kinetic rate of uptake by the biomass than Pb2+ and Cd2+. The Freundlich equilibrium isotherm model was found to describe equilibrium data better than Langmuir model suggesting that biosorption of these metal ions could be on more than one active site on the surface of YZMSC biomass. Kinetic study predicted the pseudo-second kinetic model as being able to better describe kinetic data obtained than either modified pseudo-first order or Bangham kinetic models. Biosorption of Cr3+, Cd2+ and Pb2+ onto YZMSC biomass was endothermic in nature with large positive entropy values. Biosorption of these metal ions onto YZMSC biomass was observed to be feasible and spontaneous above 283 K. Optimization of biomass weight for the removal of these metal ions suggest that 384 kg, 129 kg and 144 kg of YZMSC biomass is required for the removal of 95\% of Cr3+, Cd2+ and Pb2+ metal ions respectively from 100 mg/L of metal ions in 10 tonnes of aqueous solutions.}, language = {en} } @phdthesis{Arodudu2017, author = {Arodudu, Oludunsin Tunrayo}, title = {Sustainability assessment of agro-bioenergy systems using energy efficiency indicators}, school = {Universit{\"a}t Potsdam}, year = {2017}, abstract = {The sustainability of agro-bioenergy systems is dependent on many factors, some local or regional in implementation, some others global in nature. This study assessed the effects of often ignored local and regional factors (e.g. alternative agronomic factor options, alternative agricultural production systems, alternative biomass flows, alternative conversion technologies etc. The results from this study suggests that key to enhancing the energy efficiency (and by extension the sustainability) of agro-bioenergy systems is paying attention to local and regional factors such as biomass conversion technology, alternative agronomic factor options, alternative agricultural production systems and available biomass flows.}, language = {en} } @phdthesis{Graglia2017, author = {Graglia, Micaela}, title = {Lignin valorization}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-104863}, school = {Universit{\"a}t Potsdam}, pages = {133}, year = {2017}, abstract = {The topic of this project is the use of lignin as alternative source of aromatic building blocks and oligomers to fossil feedstocks. Lignin is known as the most abundant aromatic polymer in nature and is isolated from the lignocellulosic component of plants by different possible extraction treatments. Both the biomass source and the extraction method affect the structure of the isolated lignin, therefore influencing its further application. Lignin was extracted from beech wood by two different hydrothermal alkaline treatments, which use NaOH and Ba(OH)2 as base and by an acid-catalyzed organosolv process. Moreover, lignin was isolated from bamboo, beech wood and coconut by soda treatment of the biomasses. A comparison of the structural features of such isolated lignins was performed through the use of a wide range of analytical methods. Alkaline lignins resulted in a better candidate as carbon precursor and macromonomers for the synthesis of polymer than organosolv lignin. In fact, alkaline lignins showed higher residual mass after carbonization and higher content of the reactive hydroxy functionalities. In contrast, the lignin source turned out to slightly affect the lignin hydroxyl content. One of the most common lignin modifications is its deconstruction to obtain aromatic molecules, which can be used as starting materials for the synthesis of fine chemicals. Lignin deconstruction leads to a complex mixture of aromatic molecules. A gas chromatographic analytical method was developed to characterize the mixture of products obtained by lignin deconstruction via heterogeneous catalytic hydrogenolysis. The analytical protocol allowed the quantification of three main groups of molecules by means of calibration curves, internal standard and a preliminary silylation step of the sample. The analytical method was used to study the influence of the hydrogenolysis catalyst, temperature and system (flow and batch reactor) on the yield and selectivity of the aromatic compounds. Lignin extracted from beech wood by a hydrothermal process using Ba(OH)2 as base, was functionalized by aromatic nitration in order to add nitrogen functionalities. The final goal was the synthesis of a nitrogen doped carbon. Nitrated lignin was reduced to the amino form in order to compare the influence of different nitrogen functionalities on the porosity of the final carbon. The carbons were obtained by ionothermal treatment of the precursors in the presence of the eutectic salt mixture KCl/ZnCl2 Such synthesized carbons showed micro-, macro- and mesoporosity and were tested for their electrocatalytic activity towards the oxygen reduction reaction. Mesoporous carbon derived from nitro lignin displayed the highest electrocatalytic activity. Lignins isolated from coconut, beech wood and bamboo were used as macromonomers for the synthesis of biobased polyesters. A condensation reaction was performed between lignin and a hyper branched poly(ester-amine), previously obtained by condensation of triethanolamine and adipic acid. The influence of the lignin source and content on the thermochemical and mechanical properties of the final material was investigated. The prepolymer showed adhesive properties towards aluminum and its shear strength was therefore measured. The gluing properties of such synthesized glues turned out to be independent from the lignin source but affected by the amount of lignin in the final material. This work shows that, although still at a laboratory scale, the valorization of lignin can overcome the critical issues of lignin´s structure variability and complexity.}, language = {en} } @article{MohrKorupUlloaetal.2017, author = {Mohr, Christian Heinrich and Korup, Oliver and Ulloa, Hector and Iroume, Andres}, title = {Pyroclastic Eruption Boosts Organic Carbon Fluxes Into Patagonian Fjords}, series = {Global biogeochemical cycles}, volume = {31}, journal = {Global biogeochemical cycles}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0886-6236}, doi = {10.1002/2017GB005647}, pages = {1626 -- 1638}, year = {2017}, abstract = {Fjords and old-growth forests store large amounts of organic carbon. Yet the role of episodic disturbances, particularly volcanic eruptions, in mobilizing organic carbon in fjord landscapes covered by temperate rainforests remains poorly quantified. To this end, we estimated how much wood and soils were flushed to nearby fjords following the 2008 eruption of Chaiten volcano in south-central Chile, where pyroclastic sediments covered >12km(2) of pristine temperate rainforest. Field-based surveys of forest biomass, soil organic content, and dead wood transport reveal that the reworking of pyroclastic sediments delivered similar to 66,500+14,600/-14,500tC of large wood to two rivers entering the nearby Patagonian fjords in less than a decade. A similar volume of wood remains in dead tree stands and buried beneath pyroclastic deposits (similar to 79,900+21,100/-16,900tC) or stored in active river channels (5,900-10,600tC). We estimate that bank erosion mobilized similar to 132,300(+21,700)/(-30,600)tC of floodplain forest soil. Eroded and reworked forest soils have been accreting on coastal river deltas at >5mmyr(-1) since the eruption. While much of the large wood is transported out of the fjord by long-shore drift, the finer fraction from eroded forest soils is likely to be buried in the fjords. We conclude that the organic carbon fluxes boosted by rivers adjusting to high pyroclastic sediment loads may remain elevated for up to a decade and that Patagonian temperate rainforests disturbed by excessive loads of pyroclastic debris can be episodic short-lived carbon sources. Plain Language Summary Fjords and old-growth forests are important sinks of organic carbon. However, the role of volcanic eruptions in flushing organic carbon in fjord landscapes remains unexplored. Here we estimated how much forest vegetation and soils were lost to fjords following the 2008 eruption ofunknownChaiten volcano in south-central Chile. Pyroclastic sediments obliterated near-pristine temperateunknownrainforest, and the subsequent reworking of these sediments delivered in less than a decade similar to 66,000 tC of large wood to the mountain rivers, draining into the nearby Patagonian fjords. A similar volume of wood remains in dead tree stands and buried beneath pyroclastic deposits or stored in active riverunknownchannels. We estimate that similar to 130,000 tC of organic carbon-rich soil was lost to erosion, thus adding to the carbon loads. While much of the wood enters the long-shore drift in the fjord heads, the finerunknownfraction from eroded forest soils is likely to be buried in the fjords at rates that exceed regional estimates by an order of magnitude. We anticipate that these eruption-driven fluxes will remain elevated forunknownthe coming years and that Patagonian temperate rainforests episodically switch from carbon sinks to hitherto undocumented carbon sources if disturbed by explosive volcanic eruptions.}, language = {en} } @misc{PerkinsPernaAdrianetal.2019, author = {Perkins, Daniel M. and Perna, Andrea and Adrian, Rita and Cerme{\~n}o, Pedro and Gaedke, Ursula and Huete-Ortega, Maria and White, Ethan P. and Yvon-Durocher, Gabriel}, title = {Energetic equivalence underpins the size structure of tree and phytoplankton communities}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {684}, issn = {1866-8372}, doi = {10.25932/publishup-42569}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-425695}, pages = {8}, year = {2019}, abstract = {The size structure of autotroph communities - the relative abundance of small vs. large individuals - shapes the functioning of ecosystems. Whether common mechanisms underpin the size structure of unicellular and multicellular autotrophs is, however, unknown. Using a global data compilation, we show that individual body masses in tree and phytoplankton communities follow power-law distributions and that the average exponents of these individual size distributions (ISD) differ. Phytoplankton communities are characterized by an average ISD exponent consistent with three-quarter-power scaling of metabolism with body mass and equivalence in energy use among mass classes. Tree communities deviate from this pattern in a manner consistent with equivalence in energy use among diameter size classes. Our findings suggest that whilst universal metabolic constraints ultimately underlie the emergent size structure of autotroph communities, divergent aspects of body size (volumetric vs. linear dimensions) shape the ecological outcome of metabolic scaling in forest vs. pelagic ecosystems.}, language = {en} } @article{OlasFichtnerApelt2020, author = {Olas, Justyna Jadwiga and Fichtner, Franziska and Apelt, Federico}, title = {All roads lead to growth}, series = {Journal of experimental botany}, volume = {71}, journal = {Journal of experimental botany}, number = {1}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0022-0957}, doi = {10.1093/jxb/erz406}, pages = {11 -- 21}, year = {2020}, abstract = {Plant growth is a highly complex biological process that involves innumerable interconnected biochemical and signalling pathways. Many different techniques have been developed to measure growth, unravel the various processes that contribute to plant growth, and understand how a complex interaction between genotype and environment determines the growth phenotype. Despite this complexity, the term 'growth' is often simplified by researchers; depending on the method used for quantification, growth is viewed as an increase in plant or organ size, a change in cell architecture, or an increase in structural biomass. In this review, we summarise the cellular and molecular mechanisms underlying plant growth, highlight state-of-the-art imaging and non-imaging-based techniques to quantitatively measure growth, including a discussion of their advantages and drawbacks, and suggest a terminology for growth rates depending on the type of technique used.}, language = {en} }