@phdthesis{Mayer2022,
  author    = {Mayer, Dennis},
  title     = {Time-resolved x-ray spectroscopy of 2-thiouracil},
  doi       = {10.25932/publishup-57163},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-571636},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xiv, 169},
  year      = {2022},
  abstract  = {In this thesis, I present my contributions to the field of ultrafast molecular spectroscopy. Using the molecule 2-thiouracil as an example, I use ultrashort x-ray pulses from free- electron lasers to study the relaxation dynamics of gas-phase molecular samples. Taking advantage of the x-ray typical element- and site-selectivity, I investigate the charge flow and geometrical changes in the excited states of 2-thiouracil. In order to understand the photoinduced dynamics of molecules, knowledge about the ground-state structure and the relaxation after photoexcitation is crucial. Therefore, a part of this thesis covers the electronic ground-state spectroscopy of mainly 2-thiouracil to provide the basis for the time-resolved experiments. Many of the previously published studies that focused on the gas-phase time-resolved dynamics of thionated uracils after UV excitation relied on information from solution phase spectroscopy to determine the excitation energies. This is not an optimal strategy as solvents alter the absorption spec- trum and, hence, there is no guarantee that liquid-phase spectra resemble the gas-phase spectra. Therefore, I measured the UV-absorption spectra of all three thionated uracils to provide a gas-phase reference and, in combination with calculations, we determined the excited states involved in the transitions. In contrast to the UV absorption, the literature on the x-ray spectroscopy of thionated uracil is sparse. Thus, we measured static photoelectron, Auger-Meitner and x-ray absorption spectra on the sulfur L edge before or parallel to the time-resolved experiments we performed at FLASH (DESY, Hamburg). In addition, (so far unpublished) measurements were performed at the synchrotron SOLEIL (France) which have been included in this thesis and show the spin-orbit splitting of the S 2p photoline and its satellite which was not observed at the free-electron laser. The relaxation of 2-thiouracil has been studied extensively in recent years with ultrafast visible and ultraviolet methods showing the ultrafast nature of the molecular process after photoexcitation. Ultrafast spectroscopy probing the core-level electrons provides a complementary approach to common optical ultrafast techniques. The method inherits its local sensitivity from the strongly localised core electrons. The core energies and core-valence transitions are strongly affected by local valence charge and geometry changes, and past studies have utilised this sensitivity to investigate the molecular process reflected by the ultrafast dynamics. We have built an apparatus that provides the requirements to perform time-resolved x-ray spectroscopy on molecules in the gas phase. With the apparatus, we performed UV-pump x-ray-probe electron spectroscopy on the S 2p edge of 2-thiouracil using the free-electron laser FLASH2. While the UV triggers the relaxation dynamics, the x-ray probes the single sulfur atom inside the molecule. I implemented photoline self-referencing for the photoelectron spectral analysis. This minimises the spectral jitter of the FEL, which is due to the underlying self-amplified spontaneous emission (SASE) process. With this approach, we were not only able to study dynamical changes in the binding energy of the electrons but also to detect an oscillatory behaviour in the shift of the observed photoline, which we associate with non-adiabatic dynamics involving several electronic states. Moreover, we were able to link the UV-induced shift in binding energy to the local charge flow at the sulfur which is directly connected to the electronic state. Furthermore, the analysis of the Auger-Meitner electrons shows that energy shifts observed at early stages of the photoinduced relaxation are related to the geometry change in the molecule. More specifically, the observed increase in kinetic energy of the Auger-Meitner electrons correlates with a previously predicted C=S bond stretch.},
  language  = {en}
}
@phdthesis{Lever2022,
  author    = {Lever, Fabiano},
  title     = {Probing the ultrafast dynamics of 2-Thiouracil with soft x-rays},
  doi       = {10.25932/publishup-55523},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-555230},
  school      = {Universit{\"a}t Potsdam},
  pages     = {129},
  year      = {2022},
  abstract  = {Understanding the changes that follow UV-excitation in thionucleobases is of great importance for the study of light-induced DNA lesions and, in a broader context, for their applications in medicine and biochemistry. Their ultrafast photophysical reactions can alter the chemical structure of DNA - leading to damages to the genetic code - as proven by the increased skin cancer risk observed for patients treated with thiouracil for its immunosuppressant properties. In this thesis, I present four research papers that result from an investigation of the ultrafast dynamics of 2-thiouracil by means of ultrafast x-ray probing combined with electron spectroscopy. A molecular jet in the gas phase is excited with a uv pulse and then ionized with x-ray radiation from a Free Electron Laser. The kinetic energy of the emitted electrons is measured in a magnetic bottle spectrometer. The spectra of the measured photo and Auger electrons are used to derive a picture of the changes in the geometrical and electronic configurations. The results allow us to look at the dynamical processes from a new perspective, thanks to the element- and site- sensitivity of x-rays. The custom-built URSA-PQ apparatus used in the experiment is described. It has been commissioned and used at the FL24 beamline of the FLASH2 FEL, showing an electron kinetic energy resolution of ∆E/E ~ 40 and a pump-probe timing resolution of 190 f s. X-ray only photoelectron and Auger spectra of 2-thiouracil are extracted from the data and used as reference. Photoelectrons following the formation a 2p core hole are identified, as well as resonant and non-resonant Auger electrons. At the L 1 edge, Coster-Kronig decay is observed from the 2s core hole. The UV-induced changes in the 2p photoline allow the study the electronic-state dynamics. With the use of an Excited-State Chemical Shift (ESCS) model, we observe a ultrafast ground-state relaxation within 250 f s. Furthermore, an oscillation with a 250 f s period is observed in the 2p binding energy, showing a coherent population exchange between electronic states. Auger electrons from the 2p core hole are analyzed and used to deduce a ultrafast C -S bond expansion on a sub 100 f s scale. A simple Coulomb-model, coupled to quantum chemical calculations, can be used to infer the geometrical changes in the molecular structure.},
  language  = {en}
}