TY - JOUR A1 - Steigert, Alexander A1 - Kojda, Sandrino Danny A1 - Ibaceta-Jaña, Josefa Fernanda A1 - Abou-Ras, Daniel A1 - Gunder, René A1 - Alktash, Nivin A1 - Habicht, Klaus A1 - Wagner, Markus Raphael A1 - Klenk, Reiner A1 - Raoux, Simone A1 - Szyszka, Bernd A1 - Lauermann, Iver A1 - Muydinov, Ruslan T1 - Water-assisted crystallization of amorphous indium zinc oxide films JF - Materials today. Communications N2 - Transparent conductive materials based on indium oxide remain yet irreplaceable in various optoelectronic applications. Amorphous oxides appear especially attractive for technology as they are isotropic, demonstrate relatively high electron mobility and can be processed at low temperatures. Among them is indium zinc oxide (IZO) with a large zinc content that is crucial for keeping the amorphous state but redundant for the doping. In this work we investigated water-free and water containing IZO films obtained by radio frequency sputtering. The correlation between temperature driven changes of the chemical state, the optical and electrical properties as well as the progression of crystallization was in focus. Such characterization methods as: scanning electron microscopy, X-ray diffraction, X-ray photoelectron spectroscopy, Raman spectroscopy, temperature dependent Hall-effect measurements and others were applied. Temperature dependent electrical properties of amorphous IZO and IZO:H2O films were found to evolve similarly. Based on our experience in In2O3:H2O (In2O3:H or IOH) we proposed an explanation for the changes observed. Water admixture was found to decrease crystallization temperature of IZO significantly from similar to 550 degrees C to similar to 280 degrees C. Herewith, the presence and concentration of water and/or hydroxyls was found to determine Zn distribution in the film. In particular, Zn enrichment was detected at the film's surface respective to the high water and/or hydroxyl amount. Raman spectra revealed a two-dimensional crystallization of w-ZnO which precedes regardless water presence an extensive In2O3 crystallization. An abrupt loss of electron mobility as a result of crystallization was attributed to the formation of ZnO interlayer on grain boundaries. KW - IZO KW - Thin films KW - TCOs KW - Crystallization KW - Water-assisted crystallization Y1 - 2022 U6 - https://doi.org/10.1016/j.mtcomm.2022.103213 SN - 2352-4928 VL - 31 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Mitzscherling, Julia A1 - MacLean, Joana A1 - Lipus, Daniel A1 - Bartholomäus, Alexander A1 - Mangelsdorf, Kai A1 - Lipski, André A1 - Roddatis, Vladimir A1 - Liebner, Susanne A1 - Wagner, Dirk T1 - Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste JF - International journal of systematic and evolutionary microbiology N2 - Strain NGK65(T), a novel hexadecane degrading, non-motile, Gram-positive, rod-to-coccus shaped, aerobic bacterium, was isolated from plastic polluted soil sampled at a landfill. Strain NGK65(T) hydrolysed casein, gelatin, urea and was catalase-positive. It optimally grew at 28 degrees C. in 0-1% NaCl and at pH 7.5-8.0. Glycerol, D-glucose, arbutin, aesculin, salicin, potassium 5-ketogluconate. sucrose, acetate, pyruvate and hexadecane were used as sole carbon sources. The predominant membrane fatty acids were iso-C-16:0 followed by iso-C(17:)0 and C-18:1 omega 9c. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and hydroxyphosphatidylinositol. The cell-wall peptidoglycan type was A3 gamma, with LL-diaminopimelic acid and glycine as the diagnostic amino acids. MK 8 (H-4) was the predominant menaquinone. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain NGK65(T) belongs to the genus Nocardioides (phylum Actinobacteria). appearing most closely related to Nocardioides daejeonensis MJ31(T) (98.6%) and Nocardioides dubius KSL-104(T) (98.3%). The genomic DNA G+C content of strain NGK65(T) was 68.2%. Strain NGK65(T) and the type strains of species involved in the analysis had average nucleotide identity values of 78.3-71.9% as well as digital DNA-DNA hybridization values between 22.5 and 19.7%, which clearly indicated that the isolate represents a novel species within the genus Nocardioides. Based on phenotypic and molecular characterization, strain NGK65(T) can clearly be differentiated from its phylogenetic neighbours to establish a novel species, for which the name Nocardioides alcanivorans sp. nov. is proposed. The type strain is NGK65(T) (=DSM 113112(T)=NCCB 100846(T)). KW - Nocardioides alcanivorans KW - hexadecane KW - plastic degradation KW - terrestrial KW - plastisphere KW - bacteria Y1 - 2022 U6 - https://doi.org/10.1099/ijsem.0.005319 SN - 1466-5026 SN - 1466-5034 VL - 72 IS - 4 PB - Microbiology Society CY - London ER - TY - JOUR A1 - Liu, Qi A1 - Adler, Karsten A1 - Lipus, Daniel A1 - Kämpf, Horst A1 - Bussert, Robert A1 - Plessen, Birgit A1 - Schulz, Hans-Martin A1 - Krauze, Patryk A1 - Horn, Fabian A1 - Wagner, Dirk A1 - Mangelsdorf, Kai A1 - Alawi, Mashal T1 - Microbial signatures in deep CO2-saturated miocene sediments of the active Hartousov mofette system (NW Czech Republic) JF - Frontiers in microbiology N2 - The Hartousov mofette system is a natural CO2 degassing site in the central Cheb Basin (Eger Rift, Central Europe). In early 2016 a 108 m deep core was obtained from this system to investigate the impact of ascending mantle-derived CO2 on indigenous deep microbial communities and their surrounding life habitat. During drilling, a CO2 blow out occurred at a depth of 78.5 meter below surface (mbs) suggesting a CO2 reservoir associated with a deep low-permeable CO2-saturated saline aquifer at the transition from Early Miocene terrestrial to lacustrine sediments. Past microbial communities were investigated by hopanoids and glycerol dialkyl glycerol tetraethers (GDGTs) reflecting the environmental conditions during the time of deposition rather than showing a signal of the current deep biosphere. The composition and distribution of the deep microbial community potentially stimulated by the upward migration of CO2 starting during Mid Pleistocene time was investigated by intact polar lipids (IPLs), quantitative polymerase chain reaction (qPCR), and deoxyribonucleic acid (DNA) analysis. The deep biosphere is characterized by microorganisms that are linked to the distribution and migration of the ascending CO2-saturated groundwater and the availability of organic matter instead of being linked to single lithological units of the investigated rock profile. Our findings revealed high relative abundances of common soil and water bacteria, in particular the facultative, anaerobic and potential iron-oxidizing Acidovorax and other members of the family Comamonadaceae across the whole recovered core. The results also highlighted the frequent detection of the putative sulfate-oxidizing and CO2-fixating genus Sulfuricurvum at certain depths. A set of new IPLs are suggested to be indicative for microorganisms associated to CO2 accumulation in the mofette system. KW - geo-bio interaction KW - CO2 KW - mofette systems KW - Eger Rift KW - microbial lipid KW - biomarker KW - microbial diversity KW - deep biosphere KW - saline groundwater Y1 - 2020 U6 - https://doi.org/10.3389/fmicb.2020.543260 SN - 1664-302X VL - 11 PB - Frontiers Media CY - Lausanne ER - TY - BOOK A1 - Schmidt, Thorsten Ingo A1 - Wagner, Dieter A1 - Schwerdtfeger, Roswitha A1 - Schäfer, Andrea A1 - Musil, Andreas A1 - Edeling, Thomas A1 - Bauer, Hartmut A1 - Kinyakin, Andrey A1 - Loladze, Besik A1 - Nehls, Danny A1 - Maaß, Christian A1 - Kuhlmann, Sabine A1 - Kuckei, Daniel A. A1 - Hein, Victoria A1 - Wille, Robert A1 - Franzke, Jochen A1 - Büchner, Christiane ED - Franzke, Jochen T1 - Festschrift für Dr. Christiane Büchner in Würdigung ihres Wirkens am Kommunalwissenschaftlichen Institut (1994–2022) T3 - KWI Schriften N2 - Diese eher ungewöhnliche, aber sehr persönlich gehaltene Festschrift ist dem lang­jährigen Wirken von Dr. Christiane Büchner als „Geschäftsführerin“ am Kommunal­wissenschaftlichen Institut (KWI) der Universität Potsdam gewidmet. Die von Prof. Jochen Franzke zusammengestellte und herausgegebene Publikation enthält im ersten Teil neben dem Grußwort des Geschäftsführenden Direktors des KWI Herrn Prof. Thorsten Ingo Schmidt eine Reihe persönlicher Würdigungen von Kolleginnen und Kollegen, Gastwissenschaftlern und Mitarbeitenden, die seit 1994 in verschiedenen Phasen der Entwicklung des KWIs mit Dr. Christiane Büchner eng zusammengearbeitet haben. Der abschließende Dokumentationsteil der Publikation enthält neben Auszügen aus dem Schriftenverzeichnis von Dr. Christiane Büchner auch zwei Nachdrucke aus deren Feder zum Thema der Kreisgebietsreform in Brandenburg (von 2001) sowie über den Landkreis Barnim (von 2019). T3 - KWI-Schriften - 13 KW - Festschrift KW - Kommunen KW - Landkreise KW - Kreisgebietsreform KW - Bibliografie Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-544987 SN - 978-3-86956-529-3 SN - 1867-951X SN - 1867-9528 IS - 13 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Schulze-Makuch, Dirk A1 - Wagner, Dirk A1 - Kounaves, Samuel P. A1 - Mangelsdorf, Kai A1 - Devine, Kevin G. A1 - de Vera, Jean-Pierre A1 - Schmitt-Kopplin, Philippe A1 - Grossart, Hans-Peter A1 - Parro, Victor A1 - Kaupenjohann, Martin A1 - Galy, Albert A1 - Schneider, Beate A1 - Airo, Alessandro A1 - Froesler, Jan A1 - Davila, Alfonso F. A1 - Arens, Felix L. A1 - Caceres, Luis A1 - Cornejo, Francisco Solis A1 - Carrizo, Daniel A1 - Dartnell, Lewis A1 - DiRuggiero, Jocelyne A1 - Flury, Markus A1 - Ganzert, Lars A1 - Gessner, Mark O. A1 - Grathwohl, Peter A1 - Guan, Lisa A1 - Heinz, Jacob A1 - Hess, Matthias A1 - Keppler, Frank A1 - Maus, Deborah A1 - McKay, Christopher P. A1 - Meckenstock, Rainer U. A1 - Montgomery, Wren A1 - Oberlin, Elizabeth A. A1 - Probst, Alexander J. A1 - Saenz, Johan S. A1 - Sattler, Tobias A1 - Schirmack, Janosch A1 - Sephton, Mark A. A1 - Schloter, Michael A1 - Uhl, Jenny A1 - Valenzuela, Bernardita A1 - Vestergaard, Gisle A1 - Woermer, Lars A1 - Zamorano, Pedro T1 - Transitory microbial habitat in the hyperarid Atacama Desert JF - Proceedings of the National Academy of Sciences of the United States of America KW - habitat KW - aridity KW - microbial activity KW - biomarker KW - Mars Y1 - 2018 U6 - https://doi.org/10.1073/pnas.1714341115 SN - 0027-8424 VL - 115 IS - 11 SP - 2670 EP - 2675 PB - National Acad. of Sciences CY - Washington ER - TY - JOUR A1 - Bartholomäus, Alexander A1 - Lipus, Daniel A1 - Mitzscherling, Julia A1 - MacLean, Joana A1 - Wagner, Dirk T1 - Draft Genome Sequence of Nocardioides alcanivorans NGK65(T), a Hexadecane-Degrading Bacterium JF - Microbiology Resource Announcements N2 - The Gram-positive bacterium Nocardioides alcanivorans NGK65(T) was isolated from plastic-polluted soil and cultivated on medium with polyethylene as the single carbon source. Nanopore sequencing revealed the presence of candidate enzymes for the biodegradation of polyethylene. Here, we report the draft genome of this newly described member of the terrestrial plastisphere. Y1 - 2022 U6 - https://doi.org/10.1128/mra.01213-21 SN - 2576-098X VL - 11 IS - 8 PB - American Society for Microbiology CY - Washington ER -