@article{KuehnAltmannsbergerHens2016, author = {K{\"u}hn, Michael and Altmannsberger, Charlotte and Hens, Carmen}, title = {Waiweras WarmwasserreservoirWelche Aussagekraft haben Modelle?}, series = {Grundwasser : Zeitschrift der Fachsektion Hydrogeologie in der Deutschen Gesellschaft f{\~A}¼r Geowissenschaften (FH-DGG)}, volume = {21}, journal = {Grundwasser : Zeitschrift der Fachsektion Hydrogeologie in der Deutschen Gesellschaft f{\~A}¼r Geowissenschaften (FH-DGG)}, publisher = {Springer}, address = {Heidelberg}, issn = {1430-483X}, doi = {10.1007/s00767-016-0323-2}, pages = {107 -- 117}, year = {2016}, abstract = {The warm water geothermal reservoir below the village of Waiwera in New Zealand has been known by the native Maori for centuries. Development by the European immigrants began in 1863. Until the year 1969, the warm water flowing from all drilled wells was artesian. Due to overproduction, water up to 50 A degrees C now needs to be pumped to surface. Further, between 1975 and 1976, all warm water seeps on the beach of Waiwera ran dry. Within the context of sustainable water management, hydrogeological models must be developed as part of a management plan. Approaches of varying complexity have been set-up and applied since the 1980s. However, none of the models directly provide all results required for optimal water management. Answers are given simply to parts of the questions, nonetheless improving resource management of the geothermal reservoir.}, language = {de} } @article{FoersterBullLenzetal.2018, author = {F{\"o}rster, Daniel W. and Bull, James K. and Lenz, Dorina and Autenrieth, Marijke and Paijmans, Johanna L. A. and Kraus, Robert H. S. and Nowak, Carsten and Bayerl, Helmut and K{\"u}hn, Ralph and Saveljev, Alexander P. and Sindicic, Magda and Hofreiter, Michael and Schmidt, Krzysztof and Fickel, J{\"o}rns}, title = {Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species}, series = {Molecular ecology resources}, volume = {18}, journal = {Molecular ecology resources}, number = {6}, publisher = {Wiley}, address = {Hoboken}, issn = {1755-098X}, doi = {10.1111/1755-0998.12924}, pages = {1356 -- 1373}, year = {2018}, abstract = {Targeted capture coupled with high-throughput sequencing can be used to gain information about nuclear sequence variation at hundreds to thousands of loci. Divergent reference capture makes use of molecular data of one species to enrich target loci in other (related) species. This is particularly valuable for nonmodel organisms, for which often no a priori knowledge exists regarding these loci. Here, we have used targeted capture to obtain data for 809 nuclear coding DNA sequences (CDS) in a nonmodel organism, the Eurasian lynx Lynx lynx, using baits designed with the help of the published genome of a related model organism (the domestic cat Felis catus). Using this approach, we were able to survey intraspecific variation at hundreds of nuclear loci in L. lynx across the species' European range. A large set of biallelic candidate SNPs was then evaluated using a high-throughput SNP genotyping platform (Fluidigm), which we then reduced to a final 96 SNP-panel based on assay performance and reliability; validation was carried out with 100 additional Eurasian lynx samples not included in the SNP discovery phase. The 96 SNP-panel developed from CDS performed very successfully in the identification of individuals and in population genetic structure inference (including the assignment of individuals to their source population). In keeping with recent studies, our results show that genic SNPs can be valuable for genetic monitoring of wildlife species.}, language = {en} } @article{HennigKuehn2021, author = {Hennig, Theresa and K{\"u}hn, Michael}, title = {Surrogate model for multi-component diffusion of Uranium through Opalinus Clay on the host rock scale}, series = {Applied Sciences : open access journal}, volume = {11}, journal = {Applied Sciences : open access journal}, number = {2}, publisher = {MDPI}, address = {Basel}, issn = {2076-3417}, doi = {10.3390/app11020786}, pages = {21}, year = {2021}, abstract = {Multi-component (MC) diffusion simulations enable a process based and more precise approach to calculate transport and sorption compared to the commonly used single-component (SC) models following Fick's law. The MC approach takes into account the interaction of chemical species in the porewater with the diffuse double layer (DDL) adhering clay mineral surfaces. We studied the shaly, sandy and carbonate-rich facies of the Opalinus Clay. High clay contents dominate diffusion and sorption of uranium. The MC simulations show shorter diffusion lengths than the SC models due to anion exclusion from the DDL. This hampers diffusion of the predominant species CaUO2(CO3)32-. On the one side, species concentrations and ionic strengths of the porewater and on the other side surface charge of the clay minerals control the composition and behaviour of the DDL. For some instances, it amplifies the diffusion of uranium. We developed a workflow to transfer computationally intensive MC simulations to SC models via calibrated effective diffusion and distribution coefficients. Simulations for one million years depict maximum uranium diffusion lengths between 10 m and 35 m. With respect to the minimum requirement of a thickness of 100 m, the Opalinus Clay seems to be a suitable host rock for nuclear waste repositories.}, language = {en} } @misc{WippertRectorKuhnetal.2017, author = {Wippert, Pia-Maria and Rector, Michael V. and Kuhn, Gisela and Wuertz-Kozak, Karin}, title = {Stress and Alterations in Bones}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-395866}, pages = {7}, year = {2017}, abstract = {Decades of research have demonstrated that physical stress (PS) stimulates bone remodeling and affects bone structure and function through complex mechanotransduction mechanisms. Recent research has laid ground to the hypothesis that mental stress (MS) also influences bone biology, eventually leading to osteoporosis and increased bone fracture risk. These effects are likely exerted by modulation of hypothalamic-pituitary-adrenal axis activity, resulting in an altered release of growth hormones, glucocorticoids and cytokines, as demonstrated in human and animal studies. Furthermore, molecular cross talk between mental and PS is thought to exist, with either synergistic or preventative effects on bone disease progression depending on the characteristics of the applied stressor. This mini review will explain the emerging concept of MS as an important player in bone adaptation and its potential cross talk with PS by summarizing the current state of knowledge, highlighting newly evolving notions (such as intergenerational transmission of stress and its epigenetic modifications affecting bone) and proposing new research directions.}, language = {en} } @article{WippertRectorKuhnetal.2017, author = {Wippert, Pia-Maria and Rector, Michael V. and Kuhn, Gisela and Wuertz-Kozak, Karin}, title = {Stress and Alterations in Bones}, series = {Frontiers in endocrinology}, volume = {8}, journal = {Frontiers in endocrinology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-2392}, doi = {10.3389/fendo.2017.00096}, pages = {7}, year = {2017}, abstract = {Decades of research have demonstrated that physical stress (PS) stimulates bone remodeling and affects bone structure and function through complex mechanotransduction mechanisms. Recent research has laid ground to the hypothesis that mental stress (MS) also influences bone biology, eventually leading to osteoporosis and increased bone fracture risk. These effects are likely exerted by modulation of hypothalamic-pituitary-adrenal axis activity, resulting in an altered release of growth hormones, glucocorticoids and cytokines, as demonstrated in human and animal studies. Furthermore, molecular cross talk between mental and PS is thought to exist, with either synergistic or preventative effects on bone disease progression depending on the characteristics of the applied stressor. This mini review will explain the emerging concept of MS as an important player in bone adaptation and its potential cross talk with PS by summarizing the current state of knowledge, highlighting newly evolving notions (such as intergenerational transmission of stress and its epigenetic modifications affecting bone) and proposing new research directions.}, language = {en} } @article{StedingKempkaZirkleretal.2021, author = {Steding, Svenja and Kempka, Thomas and Zirkler, Axel and K{\"u}hn, Michael}, title = {Spatial and temporal evolution of leaching zones within potash seams reproduced by reactive transport simulations}, series = {Water / Molecular Diversity Preservation International (MDPI)}, volume = {13}, journal = {Water / Molecular Diversity Preservation International (MDPI)}, number = {2}, publisher = {Molecular Diversity Preservation International}, address = {Basel}, issn = {2073-4441}, doi = {10.3390/w13020168}, pages = {21}, year = {2021}, abstract = {Leaching zones within potash seams generally represent a significant risk to subsurface mining operations and the construction of technical caverns in salt rocks, but their temporal and spatial formation has been investigated only rudimentarily to date. To the knowledge of the authors, current reactive transport simulation implementations are not capable to address hydraulic-chemical interactions within potash salt. For this reason, a reactive transport model has been developed and complemented by an innovative approach to calculate the interchange of minerals and solution at the water-rock interface. Using this model, a scenario analysis was carried out based on a carnallite-bearing potash seam. The results show that the evolution of leaching zones depends on the mineral composition and dissolution rate of the original salt rock, and that the formation can be classified by the dimensionless parameters of Peclet (Pe) and Damkohler (Da). For Pe > 2 and Da > 1, a funnel-shaped leaching zone is formed, otherwise the dissolution front is planar. Additionally, Da > 1 results in the formation of a sylvinitic zone and a flow barrier. Most scenarios represent hybrid forms of these cases. The simulated shapes and mineralogies are confirmed by literature data and can be used to assess the hazard potential.}, language = {en} } @article{HennigStockmannKuehn2020, author = {Hennig, Theresa and Stockmann, Madlen and K{\"u}hn, Michael}, title = {Simulation of diffusive uranium transport and sorption processes in the Opalinus Clay}, series = {Applied geochemistry : journal of the International Association of Geochemistry and Cosmochemistry}, volume = {123}, journal = {Applied geochemistry : journal of the International Association of Geochemistry and Cosmochemistry}, publisher = {Elsevier}, address = {Oxford}, issn = {0883-2927}, doi = {10.1016/j.apgeochem.2020.104777}, pages = {9}, year = {2020}, abstract = {Diffusive transport and sorption processes of uranium in the Swiss Opalinus Clay were investigated as a function of partial pressure of carbon dioxide pCO(2), varying mineralogy in the facies and associated changes in porewater composition. Simulations were conducted in one-dimensional diffusion models on the 100 m-scale for a time of one million years using a bottom-up approach based on mechanistic surface complexation models as well as cation exchange to quantify sorption. Speciation calculations have shown, uranium is mainly present as U(VI) and must therefore be considered as mobile for in-situ conditions. Uranium migrated up to 26 m in both, the sandy and the carbonate-rich facies, whereas in the shaly facies 16 m was the maximum. The main species was the anionic complex CaUO2(CO3)(3)(2-) . Hence, anion exclusion was taken into account and further reduced the migration distances by 30 \%. The concentrations of calcium and carbonates reflected by the set pCO(2) determine speciation and activity of uranium and consequently the sorption behaviour. Our simulation results allow for the first time to prioritize on the far-field scale the governing parameters for diffusion and sorption of uranium and hence outline the sensitivity of the system. Sorption processes are controlled in descending priority by the carbonate and calcium concentrations, pH, pe and the clay mineral content. Therefore, the variation in porewater composition resulting from the heterogeneity of the facies in the Opalinus Clay formation needs to be considered in the assessment of uranium migration in the far field of a potential repository.}, language = {en} } @misc{RosenblumPikovskijKuehnetal.2021, author = {Rosenblum, Michael and Pikovskij, Arkadij and K{\"u}hn, Andrea A. and Busch, Johannes Leon}, title = {Real-time estimation of phase and amplitude with application to neural data}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1866-8372}, doi = {10.25932/publishup-54963}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-549630}, pages = {11}, year = {2021}, abstract = {Computation of the instantaneous phase and amplitude via the Hilbert Transform is a powerful tool of data analysis. This approach finds many applications in various science and engineering branches but is not proper for causal estimation because it requires knowledge of the signal's past and future. However, several problems require real-time estimation of phase and amplitude; an illustrative example is phase-locked or amplitude-dependent stimulation in neuroscience. In this paper, we discuss and compare three causal algorithms that do not rely on the Hilbert Transform but exploit well-known physical phenomena, the synchronization and the resonance. After testing the algorithms on a synthetic data set, we illustrate their performance computing phase and amplitude for the accelerometer tremor measurements and a Parkinsonian patient's beta-band brain activity.}, language = {en} } @article{RosenblumPikovskijKuehnetal.2021, author = {Rosenblum, Michael and Pikovskij, Arkadij and K{\"u}hn, Andrea A. and Busch, Johannes Leon}, title = {Real-time estimation of phase and amplitude with application to neural data}, series = {Scientific reports}, volume = {11}, journal = {Scientific reports}, publisher = {Springer Nature}, address = {London}, issn = {2045-2322}, doi = {10.1038/s41598-021-97560-5}, pages = {11}, year = {2021}, abstract = {Computation of the instantaneous phase and amplitude via the Hilbert Transform is a powerful tool of data analysis. This approach finds many applications in various science and engineering branches but is not proper for causal estimation because it requires knowledge of the signal's past and future. However, several problems require real-time estimation of phase and amplitude; an illustrative example is phase-locked or amplitude-dependent stimulation in neuroscience. In this paper, we discuss and compare three causal algorithms that do not rely on the Hilbert Transform but exploit well-known physical phenomena, the synchronization and the resonance. After testing the algorithms on a synthetic data set, we illustrate their performance computing phase and amplitude for the accelerometer tremor measurements and a Parkinsonian patient's beta-band brain activity.}, language = {en} } @article{WetzelKempkaKuehn2018, author = {Wetzel, Maria and Kempka, Thomas and K{\"u}hn, Michael}, title = {Quantifying rock weakening due to decreasing calcite mineral content by numerical simulations}, series = {Materials}, volume = {11}, journal = {Materials}, number = {4}, publisher = {MDPI}, address = {Basel}, issn = {1996-1944}, doi = {10.3390/ma11040542}, pages = {19}, year = {2018}, abstract = {The quantification of changes in geomechanical properties due to chemical reactions is of paramount importance for geological subsurface utilisation, since mineral dissolution generally reduces rock stiffness. In the present study, the effective elastic moduli of two digital rock samples, the Fontainebleau and Bentheim sandstones, are numerically determined based on micro-CT images. Reduction in rock stiffness due to the dissolution of 10\% calcite cement by volume out of the pore network is quantified for three synthetic spatial calcite distributions (coating, partial filling and random) using representative sub-cubes derived from the digital rock samples. Due to the reduced calcite content, bulk and shear moduli decrease by 34\% and 38\% in maximum, respectively. Total porosity is clearly the dominant parameter, while spatial calcite distribution has a minor impact, except for a randomly chosen cement distribution within the pore network. Moreover, applying an initial stiffness reduced by 47\% for the calcite cement results only in a slightly weaker mechanical behaviour. Using the quantitative approach introduced here substantially improves the accuracy of predictions in elastic rock properties compared to general analytical methods, and further enables quantification of uncertainties related to spatial variations in porosity and mineral distribution.}, language = {en} }